mRNA_E-fasciculatus_F_contig10013.33.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10013.33.1 vs. uniprot
Match: D8LJY4_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJY4_ECTSI) HSP 1 Score: 726 bits (1873), Expect = 4.110e-259 Identity = 445/539 (82.56%), Postives = 453/539 (84.04%), Query Frame = 1 Query: 1 MPPTPHRTRVRPSPS--KSPRRRGLAAEFDDSDNDEAAFRARYHVSVRSAKNLKRAGFRGLTNPYCQLNVGRQGPYTTDVVCDSVNPSWENNRQTFEFREGKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD-VNGGGNSPYPPMSPSATTTT--SLASSFVKAALSLPQKPRASGGADGAAAAAAVQAELLALSPRTATRGTEKK-AVSATKSPSLAALARASSLPFTEKAXXXXCSSSSAGVDKGGGXXESGRYGSAAAAVAQEYLLPLSPRMARGAXXXXXXXXXXGE-----RGYTKGGGAGGWSWKSFFCGVVCSVLLVFGVLWAVGVP----QLGFGLRVLEDGGDGRQAVVLIHGSKISGLADRHLVVFVGEQEVCRGGVPAPAPPTEGSSWAYDLWSSDSAAAXXXXXXXXXXXXXXXX-GGREQHVGDGGGEGDCGRWCSFS------RRLAAPLYAARRDGXXXXXXXGLGTDL 1551
MPPTPHRTRVRPSPS KSPRRRGLAAEF DSDNDEA+ ARYHVSVRSAKNLKR GFRGLTNPYCQLNVGRQGPYTTDVV DSVNPSWENNRQTFEFRE KGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETD VN GGN+PYPPMSPS SLASSFVKAALSLP KPR SGGA AAAAAVQAELLALSPRTATRGTEKK A+SATKSP ALAR SSLP TEKA XXX XX S RYGSAAA VAQE LLPLSPRMARGA XXXXXXX RGY+KGG AGGWSWKSFFCGVV S LLV G LWAVGVP QLGFGLRVLEDG +GRQAVVLIHGSKI+GLADRHLVVFVGEQEVCRGGVPAPAPPTEGSSWAYDLWSSDSAAAXXXXXXXXXXXXXXXX GGRE+H GD GGE DCGRWCSF RRLAAPLYAARR+ LGTDL
Sbjct: 1 MPPTPHRTRVRPSPSTSKSPRRRGLAAEFVDSDNDEASCCARYHVSVRSAKNLKREGFRGLTNPYCQLNVGRQGPYTTDVVFDSVNPSWENNRQTFEFREAKGPQEDKLTLACFNSGDVPELIGRLSVALSHATHKVISLPMFRKDLGGSQVWAGSVEIELHYIPEGEAGSPARGGRVGRPALDETDDVNRGGNNPYPPMSPSXXXXXXXSLASSFVKAALSLPHKPRTSGGAGDGAAAAAVQAELLALSPRTATRGTEKKKAMSATKSP---ALARVSSLPGTEKAAXXXXXXXXXXXXX---XXXSDRYGSAAA-VAQEDLLPLSPRMARGAEAAXXXXXXXXXXXARGRGYSKGGSAGGWSWKSFFCGVVFSALLVLGGLWAVGVPLLSGQLGFGLRVLEDGENGRQAVVLIHGSKIAGLADRHLVVFVGEQEVCRGGVPAPAPPTEGSSWAYDLWSSDSAAAXXXXXXXXXXXXXXXXXGGREEHTGDNGGESDCGRWCSFCXXXXXXRRLAAPLYAARRE----VGGGALGTDL 528 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10013.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10013.33.1 >prot_E-fasciculatus_F_contig10013.33.1 ID=prot_E-fasciculatus_F_contig10013.33.1|Name=mRNA_E-fasciculatus_F_contig10013.33.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=518bp MPPTPHRTRVRPSPSKSPRRRGLAAEFDDSDNDEAAFRARYHVSVRSAKNback to top mRNA from alignment at E-fasciculatus_F_contig10013:215..4435+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10013.33.1 ID=mRNA_E-fasciculatus_F_contig10013.33.1|Name=mRNA_E-fasciculatus_F_contig10013.33.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4221bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10013:215..4435+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10013:215..4435+ >mRNA_E-fasciculatus_F_contig10013.33.1 ID=mRNA_E-fasciculatus_F_contig10013.33.1|Name=mRNA_E-fasciculatus_F_contig10013.33.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10013:215..4435+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |