mRNA_E-fasciculatus_F_contig10011.31.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: D7FJE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE2_ECTSI) HSP 1 Score: 236 bits (602), Expect = 2.710e-69 Identity = 131/150 (87.33%), Postives = 138/150 (92.00%), Query Frame = 1 Query: 1 MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
MSASAAALL AG ER AGAR+G +N+FSRARPRTSTGCESRA N+IG DL AKKR DR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPAR+ TVGGEM+PSYNQ
Sbjct: 1131 MSASAAALLTAGEERVAGARNGGENDFSRARPRTSTGCESRARNRIGVDLVAKKRCDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPARVATVGGEMEPSYNQ 1280
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Match: A0A6H5L653_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L653_9PHAE) HSP 1 Score: 219 bits (558), Expect = 2.290e-63 Identity = 119/142 (83.80%), Postives = 129/142 (90.85%), Query Frame = 1 Query: 25 LKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLAAKKRGDRTGRKEKASLKKEVDTLARQLRSGVREEFFGPLSQSARERAKDMSAATTRHTTRDPMILAKPLSTITGSVLTNVPLPARMMTVGGEMKPSYNQ 450
L AGG+R AGAR+G +++FSRARPRTS GCE+RA NKIGADL AK+RGDR GRKEKASLKKEV+TLARQLRSGVREEFFGPLSQSARERAKDMSAAT RHTTRDPMILAKPLS ITGSVLTNVPLPA+M TV EM+PSY Q
Sbjct: 1061 LTAGGQRVAGARNGGEHDFSRARPRTSAGCENRARNKIGADLVAKERGDRRGRKEKASLKKEVETLARQLRSGVREEFFGPLSQSARERAKDMSAATKRHTTRDPMILAKPLSAITGSVLTNVPLPAKMATVVREMEPSYTQ 1202 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10011.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10011.31.1 >prot_E-fasciculatus_F_contig10011.31.1 ID=prot_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=150bp MSASAAALLKAGGERAAGARSGAQNNFSRARPRTSTGCESRATNKIGADLback to top mRNA from alignment at E-fasciculatus_F_contig10011:697..1323+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=627bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10011:697..1323+ >mRNA_E-fasciculatus_F_contig10011.31.1 ID=mRNA_E-fasciculatus_F_contig10011.31.1|Name=mRNA_E-fasciculatus_F_contig10011.31.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=900bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10011:697..1323+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |