mRNA_E-fasciculatus_F_contig10010.30.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Match: D8LI44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI44_ECTSI) HSP 1 Score: 327 bits (837), Expect = 1.320e-112 Identity = 159/179 (88.83%), Postives = 167/179 (93.30%), Query Frame = 1 Query: 1 MWRPWAQVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLSFLLVTGTVVLPLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLEELRTEFEKFAEKRMARELPDFYQVGRLPIIHHFKHHCTRRCGVYCFLTT 537
MWRPWAQVALLTVPWC PAVVYTADEDL PFNETRNWCESYRPVE FTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQL+FLLVTGTVV PLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLE+LRTEFEKFAE+R+A+ELPDFYQ G L II FK + TR+CG+YCF TT
Sbjct: 1 MWRPWAQVALLTVPWCFPAVVYTADEDLAPFNETRNWCESYRPVESFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNFFMKSSFRDQLSLEDLRTEFEKFAEQRLAKELPDFYQGGCLLIIQTFKPY-TRKCGMYCFSTT 178
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Match: A0A6H5K1F7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F7_9PHAE) HSP 1 Score: 254 bits (650), Expect = 4.150e-77 Identity = 141/251 (56.18%), Postives = 146/251 (58.17%), Query Frame = 1 Query: 1 MWRPWAQVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLSFLLVTGTVVLPLQHAILDHRHEIRRIWVLYHNFF-------------------------------------------------------------------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRMARELPDFYQV 462
MWRPWAQVALLT+PWC PAVVYT DEDL PFNETRNWCESYRPV+ FTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQL+FLLVTGTVV PLQHAILDHRHEIRRIWVLYHN F MKSSFRDQLSLEELRTEF KFAE+R+ARELPDFYQ
Sbjct: 430 MWRPWAQVALLTLPWCFPAVVYTTDEDLAPFNETRNWCESYRPVQSFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLTFLLVTGTVVFPLQHAILDHRHEIRRIWVLYHNLFDSLVLFWPPIAEPMYRYLTGDEEYLHSYTHGFSTLPTPAQVQDSIPEHVVLDTELRQNILQPVTGCIAFVVFPSLHSCAVTAAIAHFPSSCFPFVSQMKSSFRDQLSLEELRTEFGKFAEERLARELPDFYQA 680
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Match: D7G0B4_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0B4_ECTSI) HSP 1 Score: 231 bits (589), Expect = 3.000e-71 Identity = 117/194 (60.31%), Postives = 132/194 (68.04%), Query Frame = 1 Query: 1 MWRPWAQVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLSFLLVTGTVVLPLQHAILDHRHEIRRIWVLYHNFF----------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRMARELPDFYQV 462
MW PWAQV LLTVPWC+PAV YT D+ L+ FNE RNWCE YRP++ FTY+L LIA AFVLVYQMRKVRKQMNEY LQVFQL+FLL+TG+VV PLQH +LD++H IRRIWVLYHNF MK S RDQLSL+ELRTEF+KFAE RMARELP+FYQ
Sbjct: 67 MWPPWAQVLLLTVPWCIPAVAYTIDDHLSRFNEVRNWCEIYRPIDTFTYILGSSLIASAFVLVYQMRKVRKQMNEYRLQVFQLAFLLLTGSVVFPLQHLLLDNKHGIRRIWVLYHNFLDSLVLFWPPIAEPMYRYLTGDVDYLNSYTQGFSTLPTPAQMKGSLRDQLSLDELRTEFQKFAENRMARELPEFYQA 260
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Match: D7G7J3_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J3_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.430e-38 Identity = 83/194 (42.78%), Postives = 105/194 (54.12%), Query Frame = 1 Query: 1 MWRPWAQVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVLDGLLIAGAFVLVYQMRKVRKQMNEYHLQVFQLSFLLVTGTVVLPLQHAILDHRHEIRRIWVLYHNFF----------------------------------------MKSSFRDQLSLEELRTEFEKFAEKRMARELPDFYQV 462
MW WAQVALL++PW +P V Y+ L+ FNE NWC+ ++ YV G+ I GAF L +QMR+VRKQMN Y +QV QL FL VTGT++ PL L IRR W++Y N M+S +DQLSLEELR EFEKFA+ ++ARELPDFY+
Sbjct: 97 MWPAWAQVALLSIPWLVPVVAYSIKPSLSEFNELGNWCDINVAIDTALYVYGGVPIIGAFFLSFQMRRVRKQMNFYRMQVLQLLFLFVTGTIIFPLLEESLHSN--IRRTWIMYDNIVSSIILFWPPIIEPLYRKLSGDEDYLYSYTKGFSQLPTPAQMRSCLKDQLSLEELRCEFEKFADSKVARELPDFYKA 288
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Match: D7FTZ5_ECTSI (Signal transducer, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ5_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.630e-7 Identity = 54/189 (28.57%), Postives = 83/189 (43.92%), Query Frame = 1 Query: 19 QVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVLDG----LLIAGAFVLVYQMRKVRKQMNEYHLQVFQLSFLLVTGTVVLPLQHAILDHRH-EIRRIWVLYHNFFMK-------------------------SSFRDQLSLEELRTEFEKFAEKRMARELPDFY--QVGRLPIIHHF 489
QV LL+ +P ++ D DL F+ET N C + +D +++ V Q+R VRKQ NEY + LS L + + ILD H +RR+ + + F MK ++ QLS+E+LR EF ++ E ++A EL DFY + R I+ +F
Sbjct: 103 QVLLLSSTGLIPLLLAILDPDLFFFDETANSCGTSTGATRVVLGMDAFGFSMILCLWLVCARQLRWVRKQFNEYEAMKWTLSCLTILLFSYAIVVAIILDGHHCYVRRVAIAWEPFKMKLTGNAEYLYSFTQGFSEMPSPAQLKANLAQQLSVEQLRVEFRRYIEAKVAHELVDFYLDSLDREEIMEYF 291 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10010.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10010.30.1 >prot_E-fasciculatus_F_contig10010.30.1 ID=prot_E-fasciculatus_F_contig10010.30.1|Name=mRNA_E-fasciculatus_F_contig10010.30.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp MWRPWAQVALLTVPWCLPAVVYTADEDLTPFNETRNWCESYRPVEYFTYVback to top mRNA from alignment at E-fasciculatus_F_contig10010:59..4285- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10010.30.1 ID=mRNA_E-fasciculatus_F_contig10010.30.1|Name=mRNA_E-fasciculatus_F_contig10010.30.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4227bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10010:59..4285- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10010:59..4285- >mRNA_E-fasciculatus_F_contig10010.30.1 ID=mRNA_E-fasciculatus_F_contig10010.30.1|Name=mRNA_E-fasciculatus_F_contig10010.30.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10010:59..4285- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |