mRNA_E-fasciculatus_F_contig10009.27.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10009.27.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE) HSP 1 Score: 709 bits (1831), Expect = 1.870e-249 Identity = 368/425 (86.59%), Postives = 386/425 (90.82%), Query Frame = 1 Query: 58 ILSALASLHAQGLFHGHVTPGRILFSSPSRNELGAETAKLCYLEKAHGAGDAWQAGGTPVGAVDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQSLHTRKRFLPTREAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAQEEDPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSTRSSKKMGLGGSLSRSNS-RDESSLYIDMPDGSKALAAWLSKKTSARKTLAMKHSWQRRWFVLNPSTSMLLIYTHEVDLKASEPEASRRSSGGIPKAFPLDGAQVSPLLRPAVRDNSSSHAFCLVLEDRAERFPSMFLSFKSEKLMNVWLIAFQSVAEVRAAGTRGPGDHSSHADGSRRESTDAGGEGLDWWDDVSHQAQRVAHVTAASAFASGGGE 1329
+LSALASLHAQGLFHGHVTPGRI FSSPS NELGA TAKLCYLEKAHGAGDAWQAGG+PVG VDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQ REAIDLMLGTDPG+AIPSAVELLQHPWFPSDGA EE+PMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDS+ S +K+GLGGSLSR++S DESSLYID+PDGSKALAAWL+KKTS RK LAMK SWQRRWFVLNPSTSMLLIYT EVDL ASEPEASRRSSGGIPKAFPLD A V+PL+RP V+DN SSHAFCLVLED+AERFPSM LSFKSEKLM+VWL+AFQSVAEVRAAGTRG G+HSS DG R S DAGGEGL WWDDVSHQAQRVAHVTAASAFA GGGE
Sbjct: 123 VLSALASLHAQGLFHGHVTPGRIFFSSPSHNELGAATAKLCYLEKAHGAGDAWQAGGSPVGTVDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQP----------REAIDLMLGTDPGVAIPSAVELLQHPWFPSDGAHEEEPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSSGSLQKVGLGGSLSRASSGTDESSLYIDLPDGSKALAAWLAKKTSGRKALAMKSSWQRRWFVLNPSTSMLLIYTREVDLTASEPEASRRSSGGIPKAFPLDSAHVAPLIRPGVKDNLSSHAFCLVLEDKAERFPSMLLSFKSEKLMHVWLVAFQSVAEVRAAGTRGTGEHSSRGDGMERGSADAGGEGLGWWDDVSHQAQRVAHVTAASAFACGGGE 537
BLAST of mRNA_E-fasciculatus_F_contig10009.27.1 vs. uniprot
Match: D7FQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ4_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 7.030e-197 Identity = 302/348 (86.78%), Postives = 313/348 (89.94%), Query Frame = 1 Query: 289 TVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQSLHTRKRFLPTREAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAQEEDPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSTRSSKKMGLGGSLSR-SNSRDESSLYIDMPDGSKALAAWLSKKTSARKTLAMKHSWQRRWFVLNPSTSMLLIYTHEVDLKASEPEASRRSSGGIPKAFPLDGAQVSPLLRPAVRDNSSSHAFCLVLEDRAERFPSMFLSFKSEKLMNVWLIAFQSVAEVRAAGTRGPGDHSSHADGSRRESTDAGGEGLDWWDDVSHQAQRVAHVTAASAFASGGGE 1329
T +ALMGDSGAAAGEPLESYRATTESTGVPELSPLGR EAIDLMLGTDPGMAIPSAVELLQHPWFPSDGA+EE+PMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDS+ S KK+GLGGSLSR S+S DESSLYIDMPDGSKALAAWL+KKTS RKTLAMK SWQRRWFVLNPSTSMLLIYT EVDL ASEPEASRRSSGGIPKAFPLD A VSPL+RP VRDNSSSHAFCLVLED AERFPSMFLSFKSEKLM+VWLIAFQSVAEVRAAGTRG G+HSSHADG + S DA GEGL WWDDVSHQAQRVAHVTAASAFA GGGE
Sbjct: 14 TRISALMGDSGAAAGEPLESYRATTESTGVPELSPLGR-------------EAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAEEEEPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSSGSLKKVGLGGSLSRASSSTDESSLYIDMPDGSKALAAWLAKKTSGRKTLAMKSSWQRRWFVLNPSTSMLLIYTREVDLTASEPEASRRSSGGIPKAFPLDSAHVSPLIRPGVRDNSSSHAFCLVLEDEAERFPSMFLSFKSEKLMHVWLIAFQSVAEVRAAGTRGTGNHSSHADGMGKGSADAVGEGLGWWDDVSHQAQRVAHVTAASAFACGGGE 348 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10009.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10009.27.1 >prot_E-fasciculatus_F_contig10009.27.1 ID=prot_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=443bp PPTAATTSRIYTIRDLSNSILSALASLHAQGLFHGHVTPGRILFSSPSRNback to top mRNA from alignment at E-fasciculatus_F_contig10009:984..5010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10009.27.1 ID=mRNA_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4027bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10009:984..5010+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10009:984..5010+ >mRNA_E-fasciculatus_F_contig10009.27.1 ID=mRNA_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2658bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10009:984..5010+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |