mRNA_E-fasciculatus_F_contig10008.26.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10008.26.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE) HSP 1 Score: 852 bits (2202), Expect = 6.700e-281 Identity = 494/603 (81.92%), Postives = 510/603 (84.58%), Query Frame = 1 Query: 7 GAGIEPAVDYNASLWHILQALPMDPTVLRDLRSLRKAESSWDALLDPGRCYRFVYALQVVDAFCTSRANLSGPKSVESVLAWVLRFCRLGGVEHLVAALEVVRGKVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNATYFESCPPGERWSPATLFHASPPQLLVAATAAA------VPPAKESSGHQDKGGITLPKLLDASAAAVPSTKEPSPAAQEPDPPVTA-AVDLESIGGSVLSDVVHLLISLLRQ---STPVKPLVSAVAHVLTLAGSLSGGGLAGGARALERHPAIGSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSGGGATAAVGKAVAARNGRGGVVVASSTVKPGKNGAETRNNELARVLLTSLRADLARVQAVPFARSAGPGAAVRVGLSPVRRARGDATAAAATVADGTGVGGSVPIVVPRVHLVEVTAFVAGLVHVMLENASLSSFRPPAVPLRLPRPAAGQTQQQ-LSTSRQAEXXXXXXXXXXXLP------VRPSILPADRDETGTSKDAAGLVACAAAAADGVSRGADAASVN--GERDEGGRERASTAAEWLLEEAARRLATHEFTETFK 1758
G G+EP VDYNASLWHILQALPMDPTVLRDLRSL KAESSWDALLDP RCYRFVYALQVVDAFCTSR NLSGPKSVESVLAWVLRFCRLGGVEHLV ALEVVRGKVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNA+YFESCPPGERWSPATLFHASPP L +AA VPP KE+SG+Q+KGGI LP+LLD SAAA S KEPSP AQEPDP VT AV+LES+GGSVLSDVVHLLISLLRQ TPVKPLVSAVAHVLTL GSLSGGGLAGGARALERHPA+GSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCS ARNG SST K GK+GAE RNNELARVLLTSLR DLARVQAVPFARSAGPGA VRVGLSPVRRARGDATAA T A G+GVGGS PIVVPR+HLVEVTAFVAGLVHVMLENASLSSF PPAVP R PRPAAG QQQ LST+RQA XXXXXX RPS+LPADRDETGTSKDAAGLVA AAAA GVSRGAD ASVN GERDEG RE ASTAAEWLLEEAARRLA HEFTETF+
Sbjct: 841 GGGVEPTVDYNASLWHILQALPMDPTVLRDLRSLHKAESSWDALLDPSRCYRFVYALQVVDAFCTSRTNLSGPKSVESVLAWVLRFCRLGGVEHLVTALEVVRGKVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNASYFESCPPGERWSPATLFHASPPHLFMAAAXXXXXXXXXVPPGKEASGYQEKGGIPLPRLLDTSAAAASSAKEPSPVAQEPDPLVTVTAVNLESVGGSVLSDVVHLLISLLRQVHRGTPVKPLVSAVAHVLTLVGSLSGGGLAGGARALERHPALGSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCS------------EARNGXXXXXXXSSTAKLGKDGAEKRNNELARVLLTSLRTDLARVQAVPFARSAGPGAPVRVGLSPVRRARGDATAAE-TAAIGSGVGGSAPIVVPRLHLVEVTAFVAGLVHVMLENASLSSFPPPAVPPRQPRPAAGLPQQQELSTNRQAPRHPQQXXXXXXXXXXXXXXARPSVLPADRDETGTSKDAAGLVASVAAAAGGVSRGADTASVNVNGERDEGERELASTAAEWLLEEAARRLAAHEFTETFE 1430
BLAST of mRNA_E-fasciculatus_F_contig10008.26.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 855 bits (2209), Expect = 1.540e-280 Identity = 495/600 (82.50%), Postives = 511/600 (85.17%), Query Frame = 1 Query: 1 ARGAGIEPAVDYNASLWHILQALPMDPTVLRDLRSLRKAESSWDALLDPGRCYRFVYALQVVDAFCTSRANLSGPKSVESVLAWVLRFCRLGGVEHLVAALEVVRGKVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNATYFESCPPGERWSPATLFHASPPQLLVAATAAA------VPPAKESSGHQDKGGITLPKLLDASAAAVPSTKEPSPAAQEPDPPVTA-AVDLESIGGSVLSDVVHLLISLLRQSTPVKPLVSAVAHVLTLAGSLSGGGLAGGARALERHPAIGSLLRALCIRIPDSSVRRSACSVLHRASAWQALGRDPSCCSGGG------ATAAVGKAVAARNGRGGVVVASSTVKPGKNGAETRNNELARVLLTSLRADLARVQAVPFARSAGPGAAVRVGLSPVRRARGDATAAAATVADGTGVGGSVPIVVPRVHLVEVTAFVAGLVHVMLENASLSSFRPPAVPLRLPRPAAGQTQQQ-LSTSRQAEXXXXXXXXXXXLPVRPSILPADRDETGTSKDAAGLVACAAAAADGVSRGADAASVNGERDEGGRERASTAAEWLLEEAARRLATHEFTETFK 1758
ARG GIEPAVDYNASLWHILQALPMDPTVLRDLRSL KAESSWDALLDP RCYRFVYALQVVDAFCTSRANLSGPKSVESVLAWVLRFCRLGGVEHLVAALEVVR KVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNA+YFESCPPGERWSPATLFHASPP LLVAA VPP KE + LP+LL ASAAA S KEP DPPVT AVDLES+GGSVLSDVVHLLISLLRQSTPVKPLVSAVAHVLTL GSLSGGGLAGGARALERHPA+GSLLRALCIRIP+SSVRRSACSVLHRASAWQALGR+PSCCSGGG A AVG+ VA+RNG G V ASST + GK+G ETRNNELARVLL SLRADLARVQAVPFARSAGPGAAVRVGLSPVRRARGD TA DG GVGGS PIVVPR+HLVEVTAFVAGLVHVMLENASLSSF PPAVP R PRPAAG QQQ LST+RQ XXXXXXXLP RPS+LPADRDETGTS DAA LVA A AA GVSRGAD ASVNGE +EG RERASTAAEWLLEEAARRLA HEFTETF+
Sbjct: 1853 ARGGGIEPAVDYNASLWHILQALPMDPTVLRDLRSLHKAESSWDALLDPSRCYRFVYALQVVDAFCTSRANLSGPKSVESVLAWVLRFCRLGGVEHLVAALEVVRRKVQAVNEAGGAAEASRLEAWTLSAALLSRVLHRLFQLNASYFESCPPGERWSPATLFHASPPHLLVAAAEGXXXXXXXVPPVKE---------VPLPRLLGASAAAASSAKEP-------DPPVTVTAVDLESVGGSVLSDVVHLLISLLRQSTPVKPLVSAVAHVLTLVGSLSGGGLAGGARALERHPALGSLLRALCIRIPESSVRRSACSVLHRASAWQALGREPSCCSGGGVGAGAGAAGAVGRVVASRNGGGEVAAASSTARLGKDGPETRNNELARVLLASLRADLARVQAVPFARSAGPGAAVRVGLSPVRRARGDVTAT-----DGCGVGGSAPIVVPRLHLVEVTAFVAGLVHVMLENASLSSFPPPAVPPRQPRPAAGLPQQQELSTNRQTARHPQXXXXXXXLPARPSVLPADRDETGTSNDAARLVASVATAAGGVSRGADTASVNGESNEGERERASTAAEWLLEEAARRLAAHEFTETFE 2431 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10008.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10008.26.1 >prot_E-fasciculatus_F_contig10008.26.1 ID=prot_E-fasciculatus_F_contig10008.26.1|Name=mRNA_E-fasciculatus_F_contig10008.26.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=587bp ARGAGIEPAVDYNASLWHILQALPMDPTVLRDLRSLRKAESSWDALLDPGback to top mRNA from alignment at E-fasciculatus_F_contig10008:249..4808+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10008.26.1 ID=mRNA_E-fasciculatus_F_contig10008.26.1|Name=mRNA_E-fasciculatus_F_contig10008.26.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4560bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10008:249..4808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10008:249..4808+ >mRNA_E-fasciculatus_F_contig10008.26.1 ID=mRNA_E-fasciculatus_F_contig10008.26.1|Name=mRNA_E-fasciculatus_F_contig10008.26.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10008:249..4808+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |