mRNA_E-fasciculatus_F_contig10001.22.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10001.22.1 vs. uniprot
Match: A0A6H5L1U6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U6_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 9.960e-10 Identity = 61/105 (58.10%), Postives = 65/105 (61.90%), Query Frame = 1 Query: 25 HRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGTLPASXXXXXXXXXXX-RREAQSTVRPSAATXXXXXXXXXXXTHGRKPSGKITVPDIFKQSTKP 336
H+ AS V+PSDSPKPYGS RGRARR XXXXXXXXXXX RR QS V+PSAAT TH RKPSGKITVPD+FKQSTKP
Sbjct: 217 HQVIASGVKPSDSPKPYGSKRGRARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRPTQSAVQPSAATAVASD------THVRKPSGKITVPDVFKQSTKP 315 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10001.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10001.22.1 >prot_E-fasciculatus_F_contig10001.22.1 ID=prot_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=215bp MVVEEEQRHRSNASSVEPSDSPKPYGSHRGRARRAGAPAGAAAKSATSGTback to top mRNA from alignment at E-fasciculatus_F_contig10001:296..940+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=645bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10001:296..940+ >mRNA_E-fasciculatus_F_contig10001.22.1 ID=mRNA_E-fasciculatus_F_contig10001.22.1|Name=mRNA_E-fasciculatus_F_contig10001.22.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1290bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10001:296..940+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |