mRNA_E-fasciculatus_F_contig100.20.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: D8LFE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE4_ECTSI) HSP 1 Score: 267 bits (682), Expect = 3.960e-84 Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACIIS 1030
MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAAC IS
Sbjct: 1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACTIS 178
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A6H5JSR0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSR0_9PHAE) HSP 1 Score: 146 bits (369), Expect = 6.370e-39 Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSG 706
MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSG
Sbjct: 1 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSG 70
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A836CN67_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN67_9STRA) HSP 1 Score: 141 bits (356), Expect = 5.080e-36 Identity = 114/178 (64.04%), Postives = 131/178 (73.60%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACIIS 1030
MPTDTELHKAAHNGDL K K+L+E G VNEPGA++RRALHRAAGGNHV ++ YL+ K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATA L+ +CN++D+ K FD+AA G+H+A C LLKE+GDPNAQSAAC+IS
Sbjct: 1 MPTDTELHKAAHNGDLAKCKELIEGGGAEVNEPGASDRRALHRAAGGNHVAVIEYLLSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAASLDALCNEKDSNAKGAFDLAAEGKHQAVCKLLKEMGDPNAQSAACVIS 178
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A836CGQ7_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ7_9STRA) HSP 1 Score: 124 bits (312), Expect = 9.070e-30 Identity = 111/178 (62.36%), Postives = 121/178 (67.98%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACIIS 1030
MPTDTELHKAAHNGDL K K+L E G + VNEPGAA+RRALHRAAGGNH ++ YL+ KGAP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ATA LE MCN++D+ K LLKE+GDPNAQSAAC IS
Sbjct: 1 MPTDTELHKAAHNGDLAKCKELTEAGGVDVNEPGAADRRALHRAAGGNHTGVIEYLLSKGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAAATLEAMCNEKDSNEKXXXXXXXXXXXXXXXXLLKEMGDPNAQSAACTIS 178
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A7S4S639_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S639_9STRA) HSP 1 Score: 100 bits (249), Expect = 4.950e-21 Identity = 105/179 (58.66%), Postives = 120/179 (67.04%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAA-CIIS 1030
MP DT LHKA+HNGD +V L+E GEI VN PGA+ERR LHRAAGGNHV+I YL+ GA VD D+S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + E+ Q GKT ++A G++K LKE GDP+A S+A CIIS
Sbjct: 1 MPFDTALHKASHNGDFKQVTALIEAGEIDVNTPGASERRPLHRAAGGNHVKICEYLLSNGAGVDLADRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNKKL--ELFRAQRDDGKTALNIAKEGKNKGIIKALKEAGDPSATSSAICIIS 177
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A067BKJ0_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BKJ0_SAPPC) HSP 1 Score: 94.7 bits (234), Expect = 4.710e-19 Identity = 98/177 (55.37%), Postives = 112/177 (63.28%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACII 1027
MP+DT LHKAAHNGD G V Q++ED ++ VN PGAA+RRALHRAAGGNH E+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + +D GK FD+A AG+H A C +KELGDP AQS++C I
Sbjct: 1 MPSDTPLHKAAHNGDKGAVLQILEDPDMDVNVPGAADRRALHRAAGGNHAELCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAL-------KDKDGKMAFDLAMAGKHSAVCKAMKELGDPAAQSSSCAI 170
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: W7TUF1_9STRA (Ankyrin unc44 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUF1_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 1.030e-18 Identity = 92/156 (58.97%), Postives = 108/156 (69.23%), Query Frame = 2 Query: 560 LVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACII 1027
++E E VNE GA +RR LHRAAG NH+E+ YL+E+GA +DQ DK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + K G + + N +DA KTPFD+A G+H A LKE+GDPNAQ AAC +
Sbjct: 1 MIEGKEFDVNEAGAGDRRPLHRAAGSNHIEVCRYLIERGAKIDQADKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLTK----GDKDALVNARDADNKTPFDLAMQGKHAAVVKALKEMGDPNAQGAACCV 152
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: D7FGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW9_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 1.530e-17 Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDK 700
MP DTELHK+AH GD+ V+QLVE GE+ VN+ GA +R ALHRAAG NHV I+ YL++ GAPV+ D+
Sbjct: 1 MPLDTELHKSAHKGDIQSVRQLVETGEVNVNQKGAQDRTALHRAAGANHVGIIIYLLQAGAPVNTADR 68
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A485L282_9STRA (Aste57867_14389 protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485L282_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 5.080e-17 Identity = 99/177 (55.93%), Postives = 111/177 (62.71%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACEGGRVDVVRSLMEKATALGVLEEMCNKQDAGGKTPFDMAAAGQHKATCSLLKELGDPNAQSAACII 1027
MP+DT LHKAAHNGD G V Q++ED + VN PGAA+RR LHRAAGGNH E+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A L+ D GK FD+A AG+H A +KELGDP AQSA+C I
Sbjct: 1 MPSDTPLHKAAHNGDKGAVLQILEDPSMDVNAPGAADRRPLHRAAGGNHAELC-VIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKADSTLK------DKDGKLAFDLAMAGKHNAVVKAMKELGDPAAQSASCAI 170
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Match: A0A482SYJ6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SYJ6_9ARCH) HSP 1 Score: 81.6 bits (200), Expect = 2.760e-15 Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 2 Query: 497 MPTDTELHKAAHNGDLGKVKQLVE-----DGEIAVNEPGAAERRALHRAAGGNHVEIMNYLMEKGAPVDQTDKS 703
MP D ELHKAAH GDL K ++E + + VN+PGA++RRALHRAAG H++I +Y EKGA VD K+
Sbjct: 1 MPVDNELHKAAHKGDLEVCKAILEGQMELEEPVNVNDPGASDRRALHRAAGAGHLDICHYFFEKGADVDAVSKA 74 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig100.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig100.20.1 >prot_E-fasciculatus_F_contig100.20.1 ID=prot_E-fasciculatus_F_contig100.20.1|Name=mRNA_E-fasciculatus_F_contig100.20.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=179bp MPTDTELHKAAHNGDLGKVKQLVEDGEIAVNEPGAAERRALHRAAGGNHVback to top mRNA from alignment at E-fasciculatus_F_contig100:37447..40963+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig100.20.1 ID=mRNA_E-fasciculatus_F_contig100.20.1|Name=mRNA_E-fasciculatus_F_contig100.20.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3517bp|location=Sequence derived from alignment at E-fasciculatus_F_contig100:37447..40963+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig100:37447..40963+ >mRNA_E-fasciculatus_F_contig100.20.1 ID=mRNA_E-fasciculatus_F_contig100.20.1|Name=mRNA_E-fasciculatus_F_contig100.20.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-fasciculatus_F_contig100:37447..40963+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |