mRNA_E-fasciculatus_F_contig10.7.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10.7.1
Unique NamemRNA_E-fasciculatus_F_contig10.7.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10.7.1 vs. uniprot
Match: D7FJ19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ19_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 7.110e-20
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:  265 TKENAELRRHVKRRTQALDTIRRAYIVDVERLKRDLRDQVEGKSAAGSENLDD 423
            TKENAELRRHVKRRTQALDTIRRAYIVDVE LKRDLRDQVEGKSAAGSEN DD
Sbjct:    9 TKENAELRRHVKRRTQALDTIRRAYIVDVEHLKRDLRDQVEGKSAAGSENSDD 61
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ19_ECTSI7.110e-2096.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10contigE-fasciculatus_F_contig10:443..2082 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7FJ19
KEGG koko:K10352
KEGG Pathwayko04530,map04530
EggNOG OGs2CNW5@1,2QYAX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size425
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10.7.1prot_E-fasciculatus_F_contig10.7.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10 443..2080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927498.9951284-CDS-E-fasciculatus_F_contig10:442..5681622927498.9951284-CDS-E-fasciculatus_F_contig10:442..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 443..568 +
1695995563.2868638-CDS-E-fasciculatus_F_contig10:442..5681695995563.2868638-CDS-E-fasciculatus_F_contig10:442..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 443..568 +
1622927499.0619993-CDS-E-fasciculatus_F_contig10:841..9791622927499.0619993-CDS-E-fasciculatus_F_contig10:841..979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 842..979 +
1695995563.2973063-CDS-E-fasciculatus_F_contig10:841..9791695995563.2973063-CDS-E-fasciculatus_F_contig10:841..979Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 842..979 +
1622927499.077312-CDS-E-fasciculatus_F_contig10:1300..14171622927499.077312-CDS-E-fasciculatus_F_contig10:1300..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 1301..1417 +
1695995563.3053896-CDS-E-fasciculatus_F_contig10:1300..14171695995563.3053896-CDS-E-fasciculatus_F_contig10:1300..1417Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 1301..1417 +
1622927499.0881536-CDS-E-fasciculatus_F_contig10:2038..20801622927499.0881536-CDS-E-fasciculatus_F_contig10:2038..2080Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 2039..2080 +
1695995563.3155859-CDS-E-fasciculatus_F_contig10:2038..20801695995563.3155859-CDS-E-fasciculatus_F_contig10:2038..2080Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10 2039..2080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10.7.1

>prot_E-fasciculatus_F_contig10.7.1 ID=prot_E-fasciculatus_F_contig10.7.1|Name=mRNA_E-fasciculatus_F_contig10.7.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=141bp
CALLLLGSHVYTNIHTYMAVPGEESRAAGRIHDEDAFVGIDTPRSGTTQA
VGDDGISLGGASVATLDEFPSPQEPQALQKQKEIVDKLTKENAELRRHVK
RRTQALDTIRRAYIVDVERLKRDLRDQVEGKSAAGSENLDD
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mRNA from alignment at E-fasciculatus_F_contig10:443..2082+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10.7.1 ID=mRNA_E-fasciculatus_F_contig10.7.1|Name=mRNA_E-fasciculatus_F_contig10.7.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1640bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10:443..2082+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTGCCCTGCTCCTCCTTGGTTCACACGTCTACACTAACATCCACACTTA
CATGGCGGTGCCAGGGGAAGAATCTCGAGCGGCGGGTCGTATCCATGATG
AGGACGCCTTTGTTGGGATCGATACGGTATTTGTCTGGCATCTGCTGTGG
TTGTTGTACAAAGTCTATGGCAGTATCTCTGGCCATCGTTTTGGGTTTTG
GGATACGCCGAGTAGACCAACAAATCGCTGCTGTGTTGGTGGCCGGCCTA
CGGAAGTTGAGAGTCGTTGGAACGAACTCCAACGTTGAGTATGGCTGGCT
ACTAAGCTATTTTGACATAGAAGAGATGGTCCCTCAAGCCTCGAAAGATA
ACTCGTGTCTCTATGTCTGTTTGTACTGCATCATTTTGTTTTGGATCAGC
CTCGATCCGGGACGACCCAGGCCGTTGGCGACGATGGCATCTCGTTGGGA
GGTGCCAGTGTCGCAACTCTGGACGAGTTCCCCTCCCCCCAAGAACCGCA
GGCCCTGCAGAAGCAGAAAGAGATCGTCGATAAGCTGGTGCGTACGTCAG
TTGACAGCTGTTTGAAGGAGTTGGTAGGATCATCACCAGTGTATCAAGTT
TCATTCTTGGCCCGTGCACCGTTCGTTGTATGTATATAGATGAGTTGTAT
GAAATGCTGTGTGTGAGAGCGGTGATTCAAGTGATAAACAAATCGACTGT
CGTTATATCTGGAACGGGTTGTCTTTTAATGTTGTTAAGTACCATATTGT
ATGTTCTACGTATATATAGGATTGCAGCAGTCTTGTGAGTCTGGTGTTCC
CGCGTCCCAAAGAAAACAATCGGCTCCAATATATCTCTTCTCTGCACCCA
CCAAACAGACGAAAGAGAACGCCGAACTGAGAAGACACGTGAAACGTCGC
ACCCAAGCGCTGGACACCATACGGCGCGCATATATCGTCGATGTTGAGCG
TCTCAAACGAGATTTGCGGGACCAGGTACGTTTCGATGGCCGCCTGCACC
ACGACTGGTTTCAAACCTGATTGCACCCAGGGAAGTCGCTGGTGCAAAGC
GCGTTGAAACTAAAAACCCGTTCTTCTGCTCAGACGCTACATGCTTAACA
ACACACAATGGAATAGCCCCCGCTGAAGGCAAGAGTAGCTAGACAAAACC
CACGTTGCCGTTGAAGGTGGCTCCCAAGCGAATCACTGGCTGTCATATGC
ACAACCCAGACGAGCGATATATCCGAGGCATGACAATCCAGATCACCCCA
GAGCTCTACCGATTTGTGTCCGGCTACACGAATACAGAGTAAGGTAGGTA
GATCACACATTCGCCGCAATCTGGAGTTGCAAGCAGGGGTTTCCATATTT
AGGTTTTCTCGTTGAAGCACGTTTCCTGCAGCTTCTAATTTTACAGGCGG
CCCATATGGGGTGCCTTTCCTACAAACAGCAGGTCCTCAGTAGTTTGACC
GTCGTGTTTGTATGCGTGCTCGTGCACATGGGACAAAGAGGGCAAGTCAC
AGGTTTCGTTGCGGTGCCACCAGCTAGGTGGTATCGATATGCAATGAACC
GTGGTGGAAACTTACATGGACGAATCTGACCTCTCGTCGGAAGCAGGTGG
AAGGAAAATCGGCTGCAGGATCCGAAAACTTGGACGATGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10:443..2082+

>mRNA_E-fasciculatus_F_contig10.7.1 ID=mRNA_E-fasciculatus_F_contig10.7.1|Name=mRNA_E-fasciculatus_F_contig10.7.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=846bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10:443..2082+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTGCCCTGCTCCTCCTTGGTTCACACGTCTACACTAACATCCACACTTA
CATGGCGGTGCCAGGGGAAGAATCTCGAGCGGCGGGTCGTATCCATGATG
AGGACGCCTTTGTTGGGATCGATACGTGTGCCCTGCTCCTCCTTGGTTCA
CACGTCTACACTAACATCCACACTTACATGGCGGTGCCAGGGGAAGAATC
TCGAGCGGCGGGTCGTATCCATGATGAGGACGCCTTTGTTGGGATCGATA
CGCCTCGATCCGGGACGACCCAGGCCGTTGGCGACGATGGCATCTCGTTG
GGAGGTGCCAGTGTCGCAACTCTGGACGAGTTCCCCTCCCCCCAAGAACC
GCAGGCCCTGCAGAAGCAGAAAGAGATCGTCGATAAGCTGCCTCGATCCG
GGACGACCCAGGCCGTTGGCGACGATGGCATCTCGTTGGGAGGTGCCAGT
GTCGCAACTCTGGACGAGTTCCCCTCCCCCCAAGAACCGCAGGCCCTGCA
GAAGCAGAAAGAGATCGTCGATAAGCTGACGAAAGAGAACGCCGAACTGA
GAAGACACGTGAAACGTCGCACCCAAGCGCTGGACACCATACGGCGCGCA
TATATCGTCGATGTTGAGCGTCTCAAACGAGATTTGCGGGACCAGACGAA
AGAGAACGCCGAACTGAGAAGACACGTGAAACGTCGCACCCAAGCGCTGG
ACACCATACGGCGCGCATATATCGTCGATGTTGAGCGTCTCAAACGAGAT
TTGCGGGACCAGGTGGAAGGAAAATCGGCTGCAGGATCCGAAAACTTGGA
CGATGTGGAAGGAAAATCGGCTGCAGGATCCGAAAACTTGGACGAT
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