mRNA_E-fasciculatus_F_contig10.14.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10.14.1 vs. uniprot
Match: A0A6H5KNU9_9PHAE (CRIM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU9_9PHAE) HSP 1 Score: 734 bits (1895), Expect = 1.500e-260 Identity = 382/401 (95.26%), Postives = 389/401 (97.01%), Query Frame = 3 Query: 111 LKQDFIPSAGLPFLLKMKKVSTGERIKFADLRRRSVGVSRDADSDAAQSEQRFVSELMDTTPSSSYEGETLRDGYAYNPPDPSVSDSPLARYESDGEAADEVVTGTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 1313
L+ + G FL KMKKVSTGERIKFADLRRRSVGVSRDADSDAAQSEQRFVSELMDTTPSSSYEGETL DGYAYNPPDPSVS+SPLARYESDGEAADEVVT TQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGAS+TLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKE+VV EIG+EEAVK+RNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG
Sbjct: 77 LEAGLLSIRGTSFLFKMKKVSTGERIKFADLRRRSVGVSRDADSDAAQSEQRFVSELMDTTPSSSYEGETLGDGYAYNPPDPSVSNSPLARYESDGEAADEVVTDTQEGIGKADLIVKEDVPEIPEETQQGSLLAAGLAAVQIGASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSELTQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASITLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEQVVEEIGIEEAVKVRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 477
BLAST of mRNA_E-fasciculatus_F_contig10.14.1 vs. uniprot
Match: D7FJ13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ13_ECTSI) HSP 1 Score: 354 bits (909), Expect = 4.330e-116 Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 3 Query: 774 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 1313
MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPP NKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG
Sbjct: 1 MADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHHMSVPIASESGQRDLVRFRDSGVRGSAASADAAEVEKLLRTPPSNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVFRSKDVG 180
BLAST of mRNA_E-fasciculatus_F_contig10.14.1 vs. uniprot
Match: A0A835ZDT3_9STRA (CRIM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT3_9STRA) HSP 1 Score: 143 bits (361), Expect = 8.160e-34 Identity = 130/403 (32.26%), Postives = 188/403 (46.65%), Query Frame = 3 Query: 159 MKKVSTGERIKFADLRRRSVGVSRDADSDAA-QSEQRFVSELMDTTPSSSYEGETLRDGYAYNPPDPSVSDSPLARYESDGEAADEVVTGTQ--EGIGKADLIVKEDVPEIPE--ETQQGSLLAAGLAAVQI------GASQSGLGGLLAGARQRDDTMTLSDGESLMGDPRVDHGTDHGPGGCTAEQLIRALVSECKSRDLGSEL-TQGADKYVLRMADDDWDPDLDFPGLDSSAVITDVGVDQFVLCHQAQIEPMLHITIALHKGLNGPLTGTGAMEAPGAGASMTLEVDFQTPGQEGTHH-MSVPI----------ASESGQ-RDLVRFRDSGVRGSAASADAAEVEKLLRTPPGNKEKVVGEIGMEEAVKLRNMDTGEDITLAEIKDRVPPSLDPGEVF 1295
MKK+STGER+ D+RR + R + +DAA EQ V ELMDTTPSSS+ + RDGY Y+ + + SD + A+ VV+G+ EG DL K +V ++P+ ++ SLL+ LAAV+ G +G L+A + + + S + GGC+A QLI A++ EC++ D+ L + + LR+ADD PDLDFP LDS+A I DVGVD+FVLC P+L + G G S+ L+V PG+E M +PI AS + Q R R SG+ G S D + + ++RN+DTGE+I + + VPP + P +F
Sbjct: 1 MKKISTGERVNLQDIRR-GIDQLRLSHTDAAIAGEQMLVEELMDTTPSSSFGEDAWRDGYIYD----GAAGGASPKDYSDDDGAEAVVSGSYPPEGQESQDLFEKVEVAKLPDSQDSNPTSLLSGALAAVKSQEQQGPGIGSAGWSPLMASIMESGLSRSESXXXXXXXXXXXEEADMADTGGCSARQLISAVLKECQASDIAPILHNRPPHDFDLRIADDG-QPDLDFPELDSAAAIIDVGVDEFVLCEAGGAVPLLVVEXXXXXXXXXXXKG---------GYSLVLQVSLFEPGREDQRRSMCLPIELLPDPLWYGASTTLQTRRRTSSRTSGISGEGGSNDPSAL-----------------------TRIRNIDTGEEINVGDYDSMVPPGVSPQRLF 365 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10.14.1 >prot_E-fasciculatus_F_contig10.14.1 ID=prot_E-fasciculatus_F_contig10.14.1|Name=mRNA_E-fasciculatus_F_contig10.14.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=386bp MKKVSTGERIKFADLRRRSVGVSRDADSDAAQSEQRFVSELMDTTPSSSYback to top mRNA from alignment at E-fasciculatus_F_contig10:41677..52398+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10.14.1 ID=mRNA_E-fasciculatus_F_contig10.14.1|Name=mRNA_E-fasciculatus_F_contig10.14.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=10722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10:41677..52398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10:41677..52398+ >mRNA_E-fasciculatus_F_contig10.14.1 ID=mRNA_E-fasciculatus_F_contig10.14.1|Name=mRNA_E-fasciculatus_F_contig10.14.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2316bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10:41677..52398+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |