mRNA_D-mesarthrocarpus_Contig10345.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10345.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10345.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A3D2BUD7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BUD7_9PROT)

HSP 1 Score: 187 bits (475), Expect = 1.160e-57
Identity = 99/130 (76.15%), Postives = 109/130 (83.85%), Query Frame = 1
Query:  136 RTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGRPPAAFSAGSTMPASPAGAVESVP 525
            R A GFAQFPDIAVPAGAKMDVERSLVLGARD+WIGRLSMN+    S SYDFFLREMPK+ WQEITTVRSE SVLTY R+NR+ATIQI  KTLGGS +D+TVSPRGRP A  SA   MPA+P+G VE+ P
Sbjct:   45 RAAAGFAQFPDIAVPAGAKMDVERSLVLGARDNWIGRLSMNSGLDPSASYDFFLREMPKYRWQEITTVRSETSVLTYRRDNRIATIQITRKTLGGSWIDVTVSPRGRPQAPSSA---MPAAPSGTVETAP 171          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A2S6Q7H5_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A2S6Q7H5_9PROT)

HSP 1 Score: 174 bits (440), Expect = 1.840e-52
Identity = 90/128 (70.31%), Postives = 105/128 (82.03%), Query Frame = 1
Query:   79 CTSGDGSVSTATTSTGNASRTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGRPP 462
            C  G  + S++ T++   +RTAVGFAQF DIAVPAGA MDVERSLVLG RD+WIGRLSM+T    S +YDFFL+EMPK+ WQEITTVRSE SVLTYSRENR+ATIQI  +TLGGS +D+TVSPRGR P
Sbjct:   27 CVPGSATTSSSGTTSTPTARTAVGFAQFSDIAVPAGATMDVERSLVLGTRDEWIGRLSMSTGQGPSITYDFFLQEMPKYRWQEITTVRSETSVLTYSRENRIATIQITKRTLGGSKIDVTVSPRGRVP 154          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A2E6GL04_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GL04_9PROT)

HSP 1 Score: 130 bits (328), Expect = 2.580e-35
Identity = 75/143 (52.45%), Postives = 99/143 (69.23%), Query Frame = 1
Query:   37 RALLVGGALLLA-AGCTSGDG-SVSTATTSTGNASRTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGRP 459
            ++    G L+L+ AGC S    S S + TS G A  +   F QF D+ VP+GA MD+ERSLVLG ++ WIGRL M+   ++S+SYDFF  EMP+F W  +TTVR+E SVL+Y+R  RVATIQI+ KTLGGS + + VSP+G P
Sbjct:   21 KSTFCAGVLILSLAGCQSTTPLSASRSATSVGAAEAS---FVQFSDVPVPSGASMDLERSLVLGEKEVWIGRLVMDVGLNSSKSYDFFFAEMPRFNWVPVTTVRAETSVLSYTRGERVATIQIKKKTLGGSNISLIVSPKGSP 160          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A7V2AKZ0_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A7V2AKZ0_9PROT)

HSP 1 Score: 124 bits (312), Expect = 1.810e-33
Identity = 57/101 (56.44%), Postives = 80/101 (79.21%), Query Frame = 1
Query:  151 FAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRG 453
            F +FPD+ +P  A + ++++L+ GA +DWIGRL ++TS S ++ +DF+ REMP F WQEIT+VRS++SV+TY+R  RVATIQI  +TL G+AV ITVSPRG
Sbjct:   20 FTRFPDLPMPVSADLQMDKTLIFGANEDWIGRLVIHTSHSANDMFDFYKREMPGFEWQEITSVRSKISVMTYTRRGRVATIQIEGRTLRGAAVTITVSPRG 120          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: E7C697_9BACT (Uncharacterized protein n=1 Tax=uncultured nuHF2 cluster bacterium HF0500_39O04 TaxID=723590 RepID=E7C697_9BACT)

HSP 1 Score: 125 bits (313), Expect = 2.040e-33
Identity = 67/131 (51.15%), Postives = 98/131 (74.81%), Query Frame = 1
Query:   61 LLLAAGCTSGDGSVSTATTSTGNASRTA-VGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPR 450
            L+   GC SG G V     + G++S++A   F+QF D+ +P GA+MD++R+++LGAR+ WIGRL++ TS ++ + ++FF ++ P+FGWQEIT++RS  SVLTYS+ NRV TIQI +KTL GS V +TVSPR
Sbjct:   16 LIFLGGCESGMG-VKPMPMNKGDSSKSAQASFSQFQDVPIPIGAEMDLDRTVILGARESWIGRLTLETSHNSVKLFNFFKQKTPEFGWQEITSIRSATSVLTYSQTNRVLTIQIIAKTLQGSEVVMTVSPR 145          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: W6KNX0_MAGSQ (Uncharacterized protein n=2 Tax=Magnetospira sp. (strain QH-2) TaxID=1288970 RepID=W6KNX0_MAGSQ)

HSP 1 Score: 124 bits (310), Expect = 9.720e-33
Identity = 68/137 (49.64%), Postives = 88/137 (64.23%), Query Frame = 1
Query:   40 ALLVGGALLLAAGCTSGDGSVSTATTSTGNASRTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPR 450
            ALL G  +L     TSG  S  +  T   +A++T   F QFPDI VP  A MD+ER+L+ G    W GRL M++  + S ++DF+ +EMP FGWQ +T VRS  SVLTY+R+ RVATIQI   TL GS + ITVSP+
Sbjct:   17 ALLTGSLILSGCAVTSGVSSNKSTPTDGKSATKTQKSFNQFPDIPVPTRANMDIERTLIFGMEGGWYGRLVMSSGHNVSATFDFYQQEMPGFGWQPVTMVRSAHSVLTYTRQGRVATIQIGEATLSGSEISITVSPK 153          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A7C9GI09_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C9GI09_9PROT)

HSP 1 Score: 123 bits (308), Expect = 1.230e-32
Identity = 61/110 (55.45%), Postives = 81/110 (73.64%), Query Frame = 1
Query:  151 FAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGRP-PAAFSA 477
             AQF DI +P GA MD+ERSL+ G  D WIGRL   TS ST ++++F+ REMP FGWQE+T VR+ ++++TY R  R ATIQI  +TLGG+ V++TVSP+ +P PAA  A
Sbjct:   35 LAQFNDIPIPRGAAMDLERSLIFGPGDGWIGRLVFTTSLSTQDAFEFYGREMPAFGWQEVTRVRARINIMTYLRSARAATIQIEHRTLGGAEVNVTVSPQAQPAPAARGA 144          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A3C2DZ31_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3C2DZ31_9PROT)

HSP 1 Score: 121 bits (304), Expect = 6.030e-32
Identity = 56/100 (56.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:  151 FAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPR 450
            F QF D+ +P  ++MD+ER+ +LG ++ WIGRL +N+  S  E +DFF  EMPKF WQEI  VRSEV++LTYSR  R+A++QI+S TL GS VD+ VSPR
Sbjct:   51 FGQFSDVPIPTNSEMDLERTFILGKQESWIGRLVINSGHSAMEIFDFFRNEMPKFDWQEIAVVRSEVNILTYSRGERIASLQIKSNTLIGSVVDMVVSPR 150          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A1Z9J7V7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TMED167 TaxID=1986863 RepID=A0A1Z9J7V7_9PROT)

HSP 1 Score: 121 bits (304), Expect = 6.210e-32
Identity = 65/145 (44.83%), Postives = 98/145 (67.59%), Query Frame = 1
Query:   22 KTKLPRALLVGGALLLAAGCTSGDGSVSTATTSTGNASRTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGR 456
            +T L   +L    L+L+A C+   G   T T+ST ++      FAQF DI +P GA+M+++R+++LGA   WIGRL++N + + +  +DFF +   +FGWQE+TTVR+  S +T++R NRV  IQI +KTL GS VD+T+SPRG+
Sbjct:    4 RTLLTPTILPALILVLSA-CSQSVGLAPTPTSSTASSQANQPSFAQFQDIPIPPGARMNLDRTVILGAPASWIGRLALNANQNPAVVFDFFKQRTSEFGWQEVTTVRAATSFMTFTRANRVLNIQINAKTLQGSEVDLTISPRGQ 147          
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Match: A0A522VH66_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A522VH66_9PROT)

HSP 1 Score: 120 bits (300), Expect = 3.490e-31
Identity = 74/156 (47.44%), Postives = 99/156 (63.46%), Query Frame = 1
Query:   22 KTKLPRALLVGGALLLAAGCTSGDGSVSTATTSTGNASRTAVGFAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLREMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPRGRPPAAFSAGSTM 489
            K KL  A+L    LLL A CTS     S   ++       A  F  F DI  P+ A MD++R+LVLGA D W+GRL+ ++  S +E +DF+ +EMP++GW+E+T+VRS VSVLTY R  RVAT+QIR+ TL GS V+ TVSP+G        GS+M
Sbjct:    8 KGKLGGAVLTA-CLLLVAACTS----PSLTPSARSENESIAPHFGDFTDIPRPSNATMDLDRTLVLGAADTWVGRLAFSSRLSPTEMFDFYKQEMPRYGWEEVTSVRSTVSVLTYKRMERVATMQIRAGTLIGSYVEFTVSPQGTSAGYTPGGSSM 158          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10345.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D2BUD7_9PROT1.160e-5776.15Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2S6Q7H5_9PROT1.840e-5270.31Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A2E6GL04_9PROT2.580e-3552.45Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A7V2AKZ0_9PROT1.810e-3356.44Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]
E7C697_9BACT2.040e-3351.15Uncharacterized protein n=1 Tax=uncultured nuHF2 c... [more]
W6KNX0_MAGSQ9.720e-3349.64Uncharacterized protein n=2 Tax=Magnetospira sp. (... [more]
A0A7C9GI09_9PROT1.230e-3255.45Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A3C2DZ31_9PROT6.030e-3256.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A1Z9J7V7_9PROT6.210e-3244.83Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A522VH66_9PROT3.490e-3147.44Uncharacterized protein n=1 Tax=Rhodospirillales b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10345contigD-mesarthrocarpus_Contig10345:950..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1177928.TH2_20186
Model size534
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue6.6e-33
EggNOG OGs2E7EC@1|root,331XC@2|Bacteria,1N9UI@1224|Proteobacteria,2UJ3Q@28211|Alphaproteobacteria,2JU4M@204441|Rhodospirillales
Cds size534
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789174.430742-CDS-D-mesarthrocarpus_Contig10345:949..14831680789174.430742-CDS-D-mesarthrocarpus_Contig10345:949..1483Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10345 950..1483 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10345.2.1prot_D-mesarthrocarpus_Contig10345.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10345 950..1483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10345.2.1

>prot_D-mesarthrocarpus_Contig10345.2.1 ID=prot_D-mesarthrocarpus_Contig10345.2.1|Name=mRNA_D-mesarthrocarpus_Contig10345.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=178bp
MNRIAFYKTKLPRALLVGGALLLAAGCTSGDGSVSTATTSTGNASRTAVG
FAQFPDIAVPAGAKMDVERSLVLGARDDWIGRLSMNTSGSTSESYDFFLR
EMPKFGWQEITTVRSEVSVLTYSRENRVATIQIRSKTLGGSAVDITVSPR
GRPPAAFSAGSTMPASPAGAVESVPQR*
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mRNA from alignment at D-mesarthrocarpus_Contig10345:950..1483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10345.2.1 ID=mRNA_D-mesarthrocarpus_Contig10345.2.1|Name=mRNA_D-mesarthrocarpus_Contig10345.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=534bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10345:950..1483+ (Discosporangium mesarthrocarpum MT17_79)
ATGAATAGAATCGCATTTTATAAAACAAAGCTGCCCCGCGCCCTGCTCGT GGGCGGCGCACTCCTGCTCGCCGCCGGTTGCACATCGGGGGACGGATCGG TTTCGACCGCCACGACATCTACGGGGAACGCCTCCCGCACGGCCGTGGGC TTCGCCCAGTTCCCGGATATCGCCGTGCCGGCGGGCGCCAAGATGGATGT CGAACGTTCGCTGGTTCTCGGCGCGCGGGATGACTGGATCGGCAGATTGT CCATGAATACCAGCGGCAGCACGTCGGAATCGTATGATTTCTTCCTGCGC GAGATGCCGAAATTCGGGTGGCAGGAGATCACCACCGTGCGCTCCGAAGT CAGCGTGCTGACCTATAGCCGGGAAAACCGTGTGGCGACGATTCAGATCC GCAGCAAGACGCTCGGCGGGTCGGCAGTCGATATCACTGTGTCACCCCGC GGCCGTCCGCCGGCGGCCTTTTCGGCCGGTAGCACGATGCCGGCGTCGCC GGCCGGCGCGGTTGAAAGCGTGCCTCAGCGCTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10345:950..1483+

>mRNA_D-mesarthrocarpus_Contig10345.2.1 ID=mRNA_D-mesarthrocarpus_Contig10345.2.1|Name=mRNA_D-mesarthrocarpus_Contig10345.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=534bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10345:950..1483+ (Discosporangium mesarthrocarpum MT17_79)
ATGAATAGAATCGCATTTTATAAAACAAAGCTGCCCCGCGCCCTGCTCGT
GGGCGGCGCACTCCTGCTCGCCGCCGGTTGCACATCGGGGGACGGATCGG
TTTCGACCGCCACGACATCTACGGGGAACGCCTCCCGCACGGCCGTGGGC
TTCGCCCAGTTCCCGGATATCGCCGTGCCGGCGGGCGCCAAGATGGATGT
CGAACGTTCGCTGGTTCTCGGCGCGCGGGATGACTGGATCGGCAGATTGT
CCATGAATACCAGCGGCAGCACGTCGGAATCGTATGATTTCTTCCTGCGC
GAGATGCCGAAATTCGGGTGGCAGGAGATCACCACCGTGCGCTCCGAAGT
CAGCGTGCTGACCTATAGCCGGGAAAACCGTGTGGCGACGATTCAGATCC
GCAGCAAGACGCTCGGCGGGTCGGCAGTCGATATCACTGTGTCACCCCGC
GGCCGTCCGCCGGCGGCCTTTTCGGCCGGTAGCACGATGCCGGCGTCGCC
GGCCGGCGCGGTTGAAAGCGTGCCTCAGCGCTAG
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