mRNA_D-mesarthrocarpus_Contig10321.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10321.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10321.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Match: A0A6H5JC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC00_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 6.890e-19
Identity = 67/119 (56.30%), Postives = 81/119 (68.07%), Query Frame = 3 
Query:  177 CYNPR---AGIVTSIMKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFT-GTVVDVPYPTRSDVESAHPPAKSRDSKSSDQSVR------LEEQVAKEKARKAAKLEAMQKKLDKLKAAR 503
            C  P    AG+VTS++  +    P GLAYI  +AGG GLK+ T +G + GTVV VPYPTRSD ESA PPAK ++  S D++        LEE+ AKEKARKAAKLEAMQKK+D LKA R
Sbjct:  423 CRKPERGDAGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKLSTKEGESLGTVVQVPYPTRSDAESAMPPAK-KEGDSGDKATAAAAVLGLEEEKAKEKARKAAKLEAMQKKVDALKARR 540
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BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Match: D8LH90_ECTSI (Folate-binding protein YgfZ n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH90_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.260e-18
Identity = 65/111 (58.56%), Postives = 78/111 (70.27%), Query Frame = 3 
Query:  192 AGIVTSIMKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFT-GTVVDVPYPTRSDVESAHPPAKSRDSKSSDQSVR------LEEQVAKEKARKAAKLEAMQKKLDKLKAAR 503
            AG+VTS++  +    P GLAYI  +AGG GLK+ T +G   GTVV VPYPTRSD ESA PPAK ++  S D++        LEE+ AKEKARKAAKLEAMQKK+D LKA R
Sbjct:  432 AGVVTSMLDRDATSHPFGLAYIRTKAGGVGLKLSTKEGEPLGTVVQVPYPTRSDAESAMPPAK-KEGDSGDKATAAAAVLGLEEEKAKEKARKAAKLEAMQKKIDALKARR 541
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10321.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC00_9PHAE6.890e-1956.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH90_ECTSI1.260e-1858.56Folate-binding protein YgfZ n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10321contigD-mesarthrocarpus_Contig10321:1925..4223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LH90
PFAMsGCV_T,GCV_T_C
Model size1046
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00069,RC00183,RC02834
KEGG koko:K00605
KEGG ReactionR01221,R02300,R04125
KEGG Pathwayko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200
KEGG ModuleM00532
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0055114,GO:0071840
Exons3
Evalue7.44e-19
EggNOG OGsCOG0404@1|root,KOG2770@2759|Eukaryota
Ec32 ortholog descriptionGlycine cleavage T-protein, C-terminal barrel domain
Ec32 orthologEc-24_001010.1
EC2.1.2.10
Descriptionaminomethyltransferase activity
Cds size312
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.7930768-UTR-D-mesarthrocarpus_Contig10321:1924..24461680789172.7930768-UTR-D-mesarthrocarpus_Contig10321:1924..2446Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10321 1925..2446 -
1680789172.8346636-UTR-D-mesarthrocarpus_Contig10321:4011..42231680789172.8346636-UTR-D-mesarthrocarpus_Contig10321:4011..4223Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10321 4012..4223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789172.8047638-CDS-D-mesarthrocarpus_Contig10321:2446..25211680789172.8047638-CDS-D-mesarthrocarpus_Contig10321:2446..2521Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10321 2447..2521 -
1680789172.8141048-CDS-D-mesarthrocarpus_Contig10321:2969..31311680789172.8141048-CDS-D-mesarthrocarpus_Contig10321:2969..3131Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10321 2970..3131 -
1680789172.8237019-CDS-D-mesarthrocarpus_Contig10321:3936..40111680789172.8237019-CDS-D-mesarthrocarpus_Contig10321:3936..4011Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10321 3937..4011 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10321.3.1prot_D-mesarthrocarpus_Contig10321.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10321 2447..4011 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10321.3.1

>prot_D-mesarthrocarpus_Contig10321.3.1 ID=prot_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=104bp
MKDNPRLKPQGLAYISIRAGGAGLKVVTDDGFTGTVVDVPYPTRSDVESA
HPPAKSRDSKSSDQSVRLEEQVAKEKARKAAKLEAMQKKLDKLKAARGKK
AAG*
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mRNA from alignment at D-mesarthrocarpus_Contig10321:1925..4223-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10321.3.1 ID=mRNA_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2299bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10321:1925..4223- (Discosporangium mesarthrocarpum MT17_79)
GGGGGCCACAGAAGGGGCAGGGCAGGGGCAGGGCTGCAGGTATGCACTGT
CGTTGCTCACTTGTTTTTTCCATGGTTGATAGCCGTGTAAGTCAACACAC
TGCAGTACAGTGTATACGTATGGTTTCTGACCAATGGCTTGCAAGCTGAA
GGCATGTGGCGCTGTTGCCCGCTGATTGTTACAACCCCAGAGCCGGTATA
GTGACTTCGATTATGAAGGACAACCCCAGGCTGAAGCCCCAGGGCCTGGC
GTACATCAGCATCAGAGCAGGGGGCGCTGGGTTGAAGGTGACAGCAGCCC
CTATGTCATTTTTTTTTTGTTTTTCGCAGGAAGAGGCAAAGCTGACGCAC
GTTCAGATGCTCTACCACTCTACTACTGCACCAATCTGCTGTTGTGTGTC
TCTCCCGTCTCAGTTCTCACTTCAGCTCCGCCCCTGCTCTTGTGGGGTGG
GCCTCCAGAGCCTAAATATGACTGCTGTGGGTGTGGACTGACCTCAAATT
TGTTGTCGTTGGTGCACATCTGCCTCGTGCTGATCTTTTCTGTTGATGCG
TGGAAGATGATGACAAGTGACAAGGGGGGGGAGGCTTGATGTGCTTGCCC
TTATCAGCAGTGGGTGTGTGGGTGTGGGTGTGTCTTTTTTTTCTGTTCGG
TTTGTTTCTCTTGATCACGTGTTTTCTTGTCCGCATTGGGACCGCATGTA
AAAGAAGAGAAAAAAAAAAAAGATGTACCACGGAGTGAAAAGGTCAGGAG
TCTCTCTTGCGGCTTTTTGTTTTTTTTGTGTGCATGGGGTGGGGTCAAGC
CATACATTCGTGGGCTGGATCAATGTGAAAGGGGGCGGCAAAAATCACAA
ACTTATTGTGATTATATGGCACTTACCCTAACTCTAACCCTAACCCTAAC
CCTAGCAAACGTGACAACACACACATACTGCAGCAGCATATATAGCACAC
AGGCTTTCTGAGAGCTGCAAAGCACTTTGCACGGTGGTATTGCACATGCA
TACATGGCCGAGCTGCACCACCACAGGTTTCCTTGGGAACAAGATGGAGC
AGTTTCAGTGCCTGACAACAGACACCCTCCAATGCTCTGCAGGTGGTAAC
GGATGACGGGTTTACAGGAACAGTGGTGGATGTGCCATACCCCACGAGGT
CAGACGTCGAGAGCGCACACCCCCCCGCCAAGAGTCGAGACTCCAAGTCG
AGTGATCAGTCTGTTCGATTGGAAGAACAGGTTGCAAAGGAGAAGGCAAG
GAAGGTGGGTTGTATTTATTGCTACAGAACCGCTCCAGAGCATGCAGTGT
TGGATGTTTTGTTGCCGTGATAACTTCCATCCAGCTGGTGCCATTTTTTT
TATTTGTTTTTTTTTTTCTCGGAGTGCCTGTTGCTTCAAAGTCAAGAAAT
TATTCGACCGACACGGAAGGTAGCAGTGAGTGCCCTATCGTCCTAGACGC
CCTTGCATCCCCCTCTGACTCTCACAGAGCACCCACCAACAGTAGCTTCA
TTGCCTGTACAGAACGTGGTCGTACCCGTGGCAAACGGCGAACGGGTGGG
AGGACTTGGAAGAGACGTTGATGCCACTGCAAGACTTCTGTTTCTCATTG
GTTCCTTGTTTGTTAATGCGGTGCCGTGTGTGCTCTACCCCTGCGCCCAC
TACATGCCTCTTGCCTCCTCCTCCTCCTTCATGATTCGATTGCTGCCGGC
AGGCTGCAAAGCTAGAAGCCATGCAGAAGAAACTGGACAAGCTCAAGGCA
GCACGGGGGAAGAAAGCAGCGGGCTGACCCAAACAAAATTTGCCCACGAC
CCAAATACATCTGTGCCCTGTTTCGAGGAACGCAATTTAGAGCTCCCAAA
CCATGCGTGGGACTCAGGAAATTGTTTGTGTTGCAATTCTGGAATTCAGC
ACCAGGCAGAGGAACTGTTTGTCCTCATTTTTCTCTTTTATTGTGCTTTA
GTTAGAGAGCTCACTGTGTGTGTACCCTGCAGCAGAGACTCGGATAAAGA
TGGGAACCATATTTATCGGGGGGGGGGGGAGGTATTTGTGGATCATCGTA
TAGAGAAAAGAGGATGACAAGAAAGTATCCTTGAGCAGGAAGACAAGAAA
ATCATCTTGCCGGAGCCAGAGGAGAAATCAGCAAGGAAGGACCCTGTCCA
TTGCTGCACACTTTTGTTATTCCAACAAGAATAATTCTGAACTGGGTGTG
AGTTTTCATTGGATGTGAAACACATTTTTTACACTTGAGAGTATCTCATT
GACTTTGCACCCCATGAAAAAGTAATACCATGAGAAACCTGAGGATGAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10321:1925..4223-

>mRNA_D-mesarthrocarpus_Contig10321.3.1 ID=mRNA_D-mesarthrocarpus_Contig10321.3.1|Name=mRNA_D-mesarthrocarpus_Contig10321.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=312bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10321:1925..4223- (Discosporangium mesarthrocarpum MT17_79)
ATGAAGGACAACCCCAGGCTGAAGCCCCAGGGCCTGGCGTACATCAGCAT
CAGAGCAGGGGGCGCTGGGTTGAAGGTGGTAACGGATGACGGGTTTACAG
GAACAGTGGTGGATGTGCCATACCCCACGAGGTCAGACGTCGAGAGCGCA
CACCCCCCCGCCAAGAGTCGAGACTCCAAGTCGAGTGATCAGTCTGTTCG
ATTGGAAGAACAGGTTGCAAAGGAGAAGGCAAGGAAGGCTGCAAAGCTAG
AAGCCATGCAGAAGAAACTGGACAAGCTCAAGGCAGCACGGGGGAAGAAA
GCAGCGGGCTGA
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