mRNA_D-mesarthrocarpus_Contig10272.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10272.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10272.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10272.3.1 vs. uniprot
Match: D7FS51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS51_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 3.590e-14
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:    3 FVLYKEKNMLLTERLRAQRKNMPLIAGDRRQKVKRSMKAIRVVVGERQRVKQAALEARQREKRLQQRAEAAAMQAELGAGGTGE 254
            FVLYKEKNML+++ + ++R  +P+ AGDRRQKVKRSMKAI+VVVGERQRVK+AAL  RQ   + +QR          G GG  E
Sbjct:  128 FVLYKEKNMLMSQVVLSRRSKVPIPAGDRRQKVKRSMKAIKVVVGERQRVKRAALRERQLAAKREQRXXXXXXXXXXGEGGASE 211
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BLAST of mRNA_D-mesarthrocarpus_Contig10272.3.1 vs. uniprot
Match: A0A7S2UD47_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD47_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.920e-5
Identity = 31/51 (60.78%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:    3 FVLYKEKNMLLTERLRAQRKNMPLIAGDRRQKVKRSMKAIRVVVGERQRVK 155
            FVLY+E+NMLLTE  + +RK M L   DRR KVK+SM AI+ V+GER+R K
Sbjct:   98 FVLYQERNMLLTEAAKCRRKGMYLPQPDRRHKVKKSMGAIKHVLGERKRDK 148
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BLAST of mRNA_D-mesarthrocarpus_Contig10272.3.1 vs. uniprot
Match: A0A7S4IRP3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRP3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.770e-5
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = 3 
Query:    6 VLYKEKNMLLTERLRAQRKNMPLIAGDRRQKVKRSMKAIRVVVGERQRVKQAALEARQREKRLQ 197
            VLYKE+NMLLTE+   +R+N+     +R +KVK+SM+AIR V+GER+R K AA + ++RE   Q
Sbjct:   93 VLYKERNMLLTEKQILRRRNLEFPQPERWRKVKKSMQAIRHVMGERKREKIAAAKQKRRESEAQ 156
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10272.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS51_ECTSI3.590e-1457.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UD47_9STRA1.920e-560.78Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4IRP3_9STRA3.770e-551.56Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10272contigD-mesarthrocarpus_Contig10272:3683..4334 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FS51
Preferred nameMRPL47
PFAMsMRP-L47
Model size413
Max annot lvl2759|Eukaryota
KEGG koko:K17428
Hectar predicted targeting categoryother localisation
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons2
Evalue3.38e-09
EggNOG OGsKOG3331@1|root,KOG3331@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L47, mitochondrial
Ec32 orthologEc-16_004340.1
Descriptionmitochondrial translation
Cds size372
COG categoryJ
BRITEbr01610,ko00000,ko03011
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.6819222-UTR-D-mesarthrocarpus_Contig10272:3682..36971680789168.6819222-UTR-D-mesarthrocarpus_Contig10272:3682..3697Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10272 3683..3697 -
1680789168.7258677-UTR-D-mesarthrocarpus_Contig10272:4308..43341680789168.7258677-UTR-D-mesarthrocarpus_Contig10272:4308..4334Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10272 4309..4334 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.700781-CDS-D-mesarthrocarpus_Contig10272:3697..39971680789168.700781-CDS-D-mesarthrocarpus_Contig10272:3697..3997Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10272 3698..3997 -
1680789168.7153912-CDS-D-mesarthrocarpus_Contig10272:4236..43081680789168.7153912-CDS-D-mesarthrocarpus_Contig10272:4236..4308Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10272 4237..4308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10272.3.1prot_D-mesarthrocarpus_Contig10272.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10272 3698..4308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10272.3.1

>prot_D-mesarthrocarpus_Contig10272.3.1 ID=prot_D-mesarthrocarpus_Contig10272.3.1|Name=mRNA_D-mesarthrocarpus_Contig10272.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=124bp
MLLTERLRAQRKNMPLIAGDRRQKVKRSMKAIRVVVGERQRVKQAALEAR
QREKRLQQRAEAAAMQAELGAGGTGEGNVGPKEEEPPRVAESGGTDTEVG
VRRPSRRTRKGPPRWRRKTQRAP*
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mRNA from alignment at D-mesarthrocarpus_Contig10272:3683..4334-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10272.3.1 ID=mRNA_D-mesarthrocarpus_Contig10272.3.1|Name=mRNA_D-mesarthrocarpus_Contig10272.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=652bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10272:3683..4334- (Discosporangium mesarthrocarpum MT17_79)
GGTTTGTGCTCTACAAGGAGAAGAACATGCTCTTGACCGAGCGCTTGCGT
GCCCAGAGAAAGAACATGCCTCTCATTGCCGGGGACAGGAGACAGAAGGT
GTGTGCTCCTGCATTCACCCTTCACGCCCTCAAACTGGTTAGAGGGGACC
CATCCACCAGCCCCCGGCCAAGCAGAGCCTGGTCAATTCTTGGTAGTTGC
TCCATCGCCTTCCCCCCCCACTGAAACCCCCACTGAAAAATGCCATCCTT
ACGTCTCTCCTACCGTTTACAACAGATTGTTTTTGCCCTCCTCCCCTTTC
TTGATTACGTTGCCCCTCCCCCTCCCCCCCCCTTCAGGTGAAGCGTTCCA
TGAAGGCAATTAGGGTGGTGGTGGGAGAACGGCAAAGGGTCAAGCAGGCC
GCTCTGGAGGCCAGGCAACGTGAAAAACGCCTCCAGCAGAGGGCAGAAGC
AGCAGCCATGCAGGCAGAGCTTGGGGCAGGGGGGACGGGGGAGGGAAATG
TGGGGCCAAAAGAAGAGGAACCACCCAGGGTAGCGGAGTCAGGGGGGACA
GATACCGAGGTTGGGGTAAGGAGGCCTTCAAGACGCACCAGGAAGGGTCC
ACCCAGGTGGCGGAGGAAAACTCAGAGGGCACCGTGACGTGACTGGGGCG
CG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10272:3683..4334-

>mRNA_D-mesarthrocarpus_Contig10272.3.1 ID=mRNA_D-mesarthrocarpus_Contig10272.3.1|Name=mRNA_D-mesarthrocarpus_Contig10272.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=372bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10272:3683..4334- (Discosporangium mesarthrocarpum MT17_79)
ATGCTCTTGACCGAGCGCTTGCGTGCCCAGAGAAAGAACATGCCTCTCAT
TGCCGGGGACAGGAGACAGAAGGTGAAGCGTTCCATGAAGGCAATTAGGG
TGGTGGTGGGAGAACGGCAAAGGGTCAAGCAGGCCGCTCTGGAGGCCAGG
CAACGTGAAAAACGCCTCCAGCAGAGGGCAGAAGCAGCAGCCATGCAGGC
AGAGCTTGGGGCAGGGGGGACGGGGGAGGGAAATGTGGGGCCAAAAGAAG
AGGAACCACCCAGGGTAGCGGAGTCAGGGGGGACAGATACCGAGGTTGGG
GTAAGGAGGCCTTCAAGACGCACCAGGAAGGGTCCACCCAGGTGGCGGAG
GAAAACTCAGAGGGCACCGTGA
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