mRNA_D-mesarthrocarpus_Contig1027.12.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1027.12.1
Unique NamemRNA_D-mesarthrocarpus_Contig1027.12.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1027.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1027contigD-mesarthrocarpus_Contig1027:19445..19750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size306
Hectar predicted targeting categoryother localisation
Exons1
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789168.147219-CDS-D-mesarthrocarpus_Contig1027:19444..197501680789168.147219-CDS-D-mesarthrocarpus_Contig1027:19444..19750Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1027 19445..19750 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1027.12.1prot_D-mesarthrocarpus_Contig1027.12.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1027 19445..19750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1027.12.1

>prot_D-mesarthrocarpus_Contig1027.12.1 ID=prot_D-mesarthrocarpus_Contig1027.12.1|Name=mRNA_D-mesarthrocarpus_Contig1027.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=102bp
MLFHVEGDYGVHFVPVCAITLSLTGKDLGNSLFSSPFIPAMHLAVQSIQV
FEVEVEVVREADNPTISALQIVQTRTFQVERFEKNVKDALLLPYSYPKHP
Q*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig1027:19445..19750-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1027.12.1 ID=mRNA_D-mesarthrocarpus_Contig1027.12.1|Name=mRNA_D-mesarthrocarpus_Contig1027.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:19445..19750- (Discosporangium mesarthrocarpum MT17_79)
ATGTTGTTTCATGTTGAGGGTGATTATGGTGTTCACTTTGTGCCTGTTTG
TGCTATTACCCTCAGTCTGACGGGGAAGGACCTGGGAAATTCTTTGTTTT
CATCGCCATTCATCCCTGCCATGCACCTCGCAGTACAAAGCATTCAAGTT
TTTGAAGTTGAAGTTGAAGTTGTACGTGAGGCAGATAACCCAACGATCAG
CGCTCTTCAGATAGTGCAAACGCGCACATTTCAGGTTGAAAGGTTTGAGA
AAAATGTAAAGGATGCCTTGCTCCTACCTTACAGTTATCCTAAACACCCA
CAGTAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1027:19445..19750-

>mRNA_D-mesarthrocarpus_Contig1027.12.1 ID=mRNA_D-mesarthrocarpus_Contig1027.12.1|Name=mRNA_D-mesarthrocarpus_Contig1027.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=306bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1027:19445..19750- (Discosporangium mesarthrocarpum MT17_79)
ATGTTGTTTCATGTTGAGGGTGATTATGGTGTTCACTTTGTGCCTGTTTG
TGCTATTACCCTCAGTCTGACGGGGAAGGACCTGGGAAATTCTTTGTTTT
CATCGCCATTCATCCCTGCCATGCACCTCGCAGTACAAAGCATTCAAGTT
TTTGAAGTTGAAGTTGAAGTTGTACGTGAGGCAGATAACCCAACGATCAG
CGCTCTTCAGATAGTGCAAACGCGCACATTTCAGGTTGAAAGGTTTGAGA
AAAATGTAAAGGATGCCTTGCTCCTACCTTACAGTTATCCTAAACACCCA
CAGTAG
back to top