mRNA_D-mesarthrocarpus_Contig10265.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10265.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10265.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Match: A0A6H5KDH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDH8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.170e-24
Identity = 69/167 (41.32%), Postives = 85/167 (50.90%), Query Frame = 2 
Query:   17 SELGVAQAIMADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAA-----------------------------------LCGPGAGGTGVGDDGPATTSEDNDDGEGGNEVGGVSGSPLPMVVHPTHLFHMCLQGGRLTTAAWYLPLVRDDMAHEAALR 412
            SEL +A+A+M+D + L QL P+CF+EV+ARVARK EPERY LLFPLH +  A                                   + G  AG  GVG                  +VG   G      VHPTHLFH C+  G+LTTAAWYLPL+RDD+A +AA R
Sbjct:  233 SELELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVCGAPDAEEEETEKVSSXXXXXXXXXXXXXXXRARSVEAVNGERAGAGGVG------------------QVGRCVGPRWGRWVHPTHLFHDCVSSGKLTTAAWYLPLIRDDVAFDAAQR 381
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BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.210e-23
Identity = 70/152 (46.05%), Postives = 89/152 (58.55%), Query Frame = 2 
Query:   20 ELGVAQAIMADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAALCGPGAGGT-----GVGDDGPA-----------TTSEDNDDGE-----GGNEVGGVSGSPLPMVVHPTHLFHMCLQGGRLTTAAWYLPLVRDDMAHEAALR 412
            +L +A+A+M+D + L QL P+CF+EV+ARVARK EPERY LLFPLH +  A   P A         VG                  SE+  +GE     G  +VG   G      VHPTHLFH C+  G+LTTAAWYLPL+RDD+A++AA R
Sbjct: 2082 KLELARAVMSDSVYLAQLAPECFHEVVARVARKAEPERYPLLFPLHLVRGA---PDAEEETEKFFSVGXXXXXXXXXXXXXXXRAQSEEAVNGERARAGGVGQVGRCVGPRWGRWVHPTHLFHECVSSGKLTTAAWYLPLIRDDVAYDAAQR 2230
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10265.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDH8_9PHAE6.170e-2441.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB77_ECTSI3.210e-2346.05SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10265contigD-mesarthrocarpus_Contig10265:185..1243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LB77
PFAMsACBP,RIC1
Model size613
Max annot lvl2759|Eukaryota
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.48e-22
EggNOG OGsKOG2006@1|root,KOG2006@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
Cds size468
COG categoryS
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.9727912-UTR-D-mesarthrocarpus_Contig10265:184..2861680789167.9727912-UTR-D-mesarthrocarpus_Contig10265:184..286Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10265 185..286 -
1680789168.0054824-UTR-D-mesarthrocarpus_Contig10265:1200..12431680789168.0054824-UTR-D-mesarthrocarpus_Contig10265:1200..1243Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10265 1201..1243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.9842398-CDS-D-mesarthrocarpus_Contig10265:286..7031680789167.9842398-CDS-D-mesarthrocarpus_Contig10265:286..703Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10265 287..703 -
1680789167.996014-CDS-D-mesarthrocarpus_Contig10265:1149..12001680789167.996014-CDS-D-mesarthrocarpus_Contig10265:1149..1200Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10265 1150..1200 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10265.1.1prot_D-mesarthrocarpus_Contig10265.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10265 287..1200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10265.1.1

>prot_D-mesarthrocarpus_Contig10265.1.1 ID=prot_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=156bp
MADCLCLVQLVPDCFYEVIARVARKMEPERYSLLFPLHPLPAALCGPGAG
GTGVGDDGPATTSEDNDDGEGGNEVGGVSGSPLPMVVHPTHLFHMCLQGG
RLTTAAWYLPLVRDDMAHEAALRCERCSATRDRGGACTSLAICTGCIGLE
RSEAL*
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mRNA from alignment at D-mesarthrocarpus_Contig10265:185..1243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10265.1.1 ID=mRNA_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1059bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:185..1243- (Discosporangium mesarthrocarpum MT17_79)
GGTGCCAGGGGGAGCATCGGAGCTGGGAGTGGCGCAGGCCATCATGGCGG
ACTGCCTGTGCCTAGTGCAGCTGGTCCCAGACTGTTTCTATGAGGTGCCT
CGTCGGTGTGAATAGGGTTAGGGTGGACGGGGTTACTGCAGCAAACGAAA
TGTTAGAAGTGGTCTTAAAGAAGGGGCGCTCAGGTGGAAGGCGTTTGTTG
TTGGGCAGAGAGGACCGCACGCACCTGGACCAAGGCAACAGGACCACAGC
ACCGTGGGGGTGCAGTGAGGGCGTGTGGTCAGGGTGGGGCAGGGGGGGTG
CATTTTTTTTTTTTTTGGGAACCTGGTTAGGGGCTATCTATTGGTTAGAC
GAAGGAGAGGGCTGTCGGTTACATGGTGGAAGAGACCACGACTGTTACTA
TCACCCCCTAACCCTAACCTAAGGGGTGGAGTAAGTACCCGAACCCAGTT
TGCTATTGCGCGGGGGCATAGCTTTCTCGAACCCTTCTCCCCCCCCTCTC
CCTCCTCCCCTTGTCCCCAAACTGTGGTCTTTATTCGTAGGTGATTGCCC
GTGTTGCCAGGAAGATGGAGCCTGAGCGTTACTCCCTCCTCTTCCCTCTG
CATCCTCTTCCAGCTGCGCTTTGTGGACCAGGGGCAGGCGGCACTGGGGT
TGGGGATGACGGCCCAGCTACAACCAGTGAAGACAACGACGATGGGGAGG
GAGGGAACGAGGTGGGGGGCGTGAGCGGGTCCCCGCTGCCCATGGTGGTG
CACCCTACTCACCTGTTCCACATGTGCCTCCAGGGGGGGAGGCTTACGAC
CGCGGCCTGGTACCTTCCCCTGGTGCGGGACGACATGGCTCACGAGGCGG
CCCTCAGGTGTGAGCGATGTTCTGCGACCAGGGATCGGGGGGGTGCATGC
ACAAGCCTTGCAATTTGTACGGGTTGCATTGGATTAGAGCGCTCTGAAGC
ACTTTGAACCATGAACTGTGAAGTAATTTTGTGCTCTGGGTTTGCTCTGG
GGCTCCAGGTTGTTCATTATGGAGTACCTTGATTAAGATTGCACAGTTCT
TTGGTCAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10265:185..1243-

>mRNA_D-mesarthrocarpus_Contig10265.1.1 ID=mRNA_D-mesarthrocarpus_Contig10265.1.1|Name=mRNA_D-mesarthrocarpus_Contig10265.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=468bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10265:185..1243- (Discosporangium mesarthrocarpum MT17_79)
ATGGCGGACTGCCTGTGCCTAGTGCAGCTGGTCCCAGACTGTTTCTATGA
GGTGATTGCCCGTGTTGCCAGGAAGATGGAGCCTGAGCGTTACTCCCTCC
TCTTCCCTCTGCATCCTCTTCCAGCTGCGCTTTGTGGACCAGGGGCAGGC
GGCACTGGGGTTGGGGATGACGGCCCAGCTACAACCAGTGAAGACAACGA
CGATGGGGAGGGAGGGAACGAGGTGGGGGGCGTGAGCGGGTCCCCGCTGC
CCATGGTGGTGCACCCTACTCACCTGTTCCACATGTGCCTCCAGGGGGGG
AGGCTTACGACCGCGGCCTGGTACCTTCCCCTGGTGCGGGACGACATGGC
TCACGAGGCGGCCCTCAGGTGTGAGCGATGTTCTGCGACCAGGGATCGGG
GGGGTGCATGCACAAGCCTTGCAATTTGTACGGGTTGCATTGGATTAGAG
CGCTCTGAAGCACTTTGA
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