mRNA_D-mesarthrocarpus_Contig10258.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10258.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10258.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 7.160e-28
Identity = 70/175 (40.00%), Postives = 103/175 (58.86%), Query Frame = 1
Query:    1 CLPCLLSKSAQVTHLKVGSSKEYGI---LGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT----LTRRPQK 504
            C  C ++KS+Q  H K+ +    GI   L  VS  L GP + S++    Y+  F++ ATR+K VYF+++K     +L ++++   IP GLRVQ LHSDNGGE      R +  + GI QRFSSP+TP+Q+ IS+R G  I  M RC + ++ L  +LW ++ AT    + R P K
Sbjct:  272 CGTCKINKSSQQNHPKIANMD--GITERLQLVSTDLLGPISPSAIGGYNYMAKFTDHATRLKAVYFIAKKGDALSSLVNYVQDVAIPLGLRVQYLHSDNGGEYVNSDFRDYCRTTGIIQRFSSPHTPQQNGISERDGRTIMNMARCIINETNLPKHLWGEIAATSVFLINRLPHK 444          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.650e-20
Identity = 63/173 (36.42%), Postives = 90/173 (52.02%), Query Frame = 1
Query:    1 CLPCLLSKSAQVTHLK-VGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT----LTRRPQK 504
            C  C ++K  Q  H K V S      L  VS  L GP +  ++    Y+  F++  TR+  VYF++ K        +F +   IP+GLR+Q LHSDN  E    A R +  + G  Q F+SP+TP+Q+ IS+R G  I  MTRC L ++ L   LW ++ AT    + R P K
Sbjct:  206 CDTCHVNKCVQNNHPKTVISDNITQPLQVVSTDLIGPISLPALGGYSYISKFNDYITRLNAVYFIAYKDEALLPFVNFTQDVAIPSGLRIQRLHSDNRKEYVNSAFRNYCKTTGAVQTFTSPHTPQQNGISERDGRTILNMTRCILNEARLPKILWGEIAATSVFLINRLPHK 378          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A1W7R6G9_AEDAL (Putative pol polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6G9_AEDAL)

HSP 1 Score: 76.6 bits (187), Expect = 5.180e-13
Identity = 44/163 (26.99%), Postives = 77/163 (47.24%), Query Frame = 1
Query:    1 CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYATLT 489
            C  CL  K A++   K    K    L  +   + GP    +    RY  +  +  +R   VYF+ +K      + +++++     G   +++ SD GGE   +AL  +    GITQ+F++ YTP+Q+ +S+R    +  M RC ++D+ L    W +   T T
Sbjct:  159 CECCLEGKMARLPFPKRSRKKSKQPLDIIHTDVCGPMQTPTPGGCRYFLTMIDDHSRYTVVYFLKKKSEVTERIQEYVQYVKNLFGRAPKVIRSDQGGEYQNEALDRYCRQEGITQQFTTAYTPQQNGVSERKNRSLVEMARCMILDAQLPNKYWAEAVNTAT 321          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A699GUE9_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GUE9_TANCI)

HSP 1 Score: 74.7 bits (182), Expect = 2.420e-12
Identity = 41/129 (31.78%), Postives = 66/129 (51.16%), Query Frame = 1
Query:   97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483
            L GP T  S++  +Y    +++ +R  +VYF+ +K     T+  F+K       ++V+ L +DNG E     L  F    GI+Q FSS YTP Q+ +++R    +    R  L+ S  +   WTD+ AT
Sbjct:  876 LFGPVTPRSINHEKYTLVIADEYSRYTWVYFLKKKSQAHETIMSFIKRVENQNDIKVKQLRTDNGTELKNSTLVNFCDEKGISQNFSSLYTPEQNGVAERKNKTLIEAARTMLLGSVFSKQYWTDVVAT 1004          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A6L2MCU6_TANCI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MCU6_TANCI)

HSP 1 Score: 72.0 bits (175), Expect = 2.100e-11
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   91 IYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483
            +YL  P T+ S++  +Y     ++ ++  +VYF+ +K    +T+  F+K       ++V+ L +DNG E     L  F    GI+Q FSSPYTP Q+ +++R    +    R  L  S  +   WT+  AT
Sbjct:  554 MYLFRPVTSRSINHEKYTIFIVDEYSKYTWVYFLKKKSQAPKTITSFIKRVENQNDIKVRQLKTDNGTEFRNIILVNFYDEKGISQNFSSPYTPEQNGVAERKNRTLIEAVRTMLSGSFFSKQCWTEAVAT 684          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1M207_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1M207_ARTAN)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-10
Identity = 39/129 (30.23%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483
            L GP +  S+   +Y     ++ +R  +VYF+S+K     T+  F++       ++V+ + +DNG E     L  F    GI+Q FSSPYTP Q+ +++R    +    R  L  S L+ + WT+   T
Sbjct: 1084 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLSKKSQAADTIMSFVRNIENQNDVKVKQIRTDNGTEFKNQDLECFCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1212          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1NG18_ARTAN (Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1NG18_ARTAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-10
Identity = 37/129 (28.68%), Postives = 65/129 (50.39%), Query Frame = 1
Query:   97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483
            L GP +  S+   +Y     ++ +R  +VYF+++K     T+  F++       ++V+ + +DNG +     L  F    GI+Q FSSPYTP Q+ +++R    +    R  L  S L+ + WT+   T
Sbjct:  908 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLTKKSQAAETIMSFVRNIENQNDIKVKQIRTDNGTKFKNQDLECFCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1036          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A2U1KSR6_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1KSR6_ARTAN)

HSP 1 Score: 67.0 bits (162), Expect = 1.160e-9
Identity = 37/129 (28.68%), Postives = 64/129 (49.61%), Query Frame = 1
Query:   97 LQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYAT 483
            L GP +  S+   +Y     ++ +R  +VYF+++K     T+  F++       ++V+ + +DNG E     L       GI+Q FSSPYTP Q+ +++R    +    R  L  S L+ + WT+   T
Sbjct: 1070 LFGPVSPMSIHHEKYTLVIVDEYSRYTWVYFLTKKSQAAETIMSFVRNIENQNDIKVKQIRTDNGTEFKNQDLEYLCDEKGISQNFSSPYTPEQNGVAERKNRTLIEAARTMLNGSVLSKHFWTEAVKT 1198          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A0D3CKP1_BRAOL (Integrase catalytic domain-containing protein n=1 Tax=Brassica oleracea var. oleracea TaxID=109376 RepID=A0A0D3CKP1_BRAOL)

HSP 1 Score: 65.1 bits (157), Expect = 5.250e-9
Identity = 34/129 (26.36%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  109 FTASSMSRA--RYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYATLT 489
            +TA  +SR   +Y  +F ++ ++  ++  +  K        +F  +      +++++L SDNGGE    A +  +ASHGI Q+ S PYTP+Q+ +++R    +  + R  +  + +    W D   T T
Sbjct:  560 WTAPCVSREQHKYFVTFIDEKSKYTWITLLQSKDRVLEAFKNFQNYITNHFNVKIKILRSDNGGEYTSTAFKQHLASHGIIQQTSCPYTPQQNGVAERKNRHLMEVARSMMFHTNVPKRFWGDAVVTAT 688          
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Match: A0A8J5ZBL5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZBL5_9ROSI)

HSP 1 Score: 64.7 bits (156), Expect = 7.030e-9
Identity = 46/160 (28.75%), Postives = 75/160 (46.88%), Query Frame = 1
Query:    1 CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCSFSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGECFGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGLAANLWTDLYA 480
            C+ C L K  ++   K  S+    +L  V   + GP   +S +  RY  +F++  TR  +VYF+ +K         F K      G+ +Q L +D GGE     L+ ++  HGITQRF+ PYT  Q+ + +R   +I       L  + +    W D ++
Sbjct:  389 CVACHLGKEHRLPFSKSVSAYS-ALLQLVVADVWGPAPVTS-NGFRYYVAFTDAYTRYTWVYFLHRKSEVLTIFPQFHKQAERVLGVSLQTLQTDGGGEF--QVLKQYLTQHGITQRFTCPYTSAQNGLVERKHRQIVETGLSMLAHASMPITYWNDAFS 544          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10258.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE7.160e-2840.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JV56_9PHAE1.650e-2036.42Integrase catalytic domain-containing protein n=1 ... [more]
A0A1W7R6G9_AEDAL5.180e-1326.99Putative pol polyprotein (Fragment) n=1 Tax=Aedes ... [more]
A0A699GUE9_TANCI2.420e-1231.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2MCU6_TANCI2.100e-1130.53Integrase catalytic domain-containing protein (Fra... [more]
A0A2U1M207_ARTAN1.010e-1030.23Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1NG18_ARTAN3.350e-1028.68Integrase, catalytic region, Zinc finger, CCHC-typ... [more]
A0A2U1KSR6_ARTAN1.160e-928.68Retrovirus-related Pol polyprotein from transposon... [more]
A0A0D3CKP1_BRAOL5.250e-926.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ZBL5_9ROSI7.030e-928.75Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10258contigD-mesarthrocarpus_Contig10258:2054..2596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra87570
PFAMsrve
Model size543
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.8e-20
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGWN@4776|Peronosporales
DescriptionIntegrase core domain
Cds size543
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.6735628-CDS-D-mesarthrocarpus_Contig10258:2053..25961680789167.6735628-CDS-D-mesarthrocarpus_Contig10258:2053..2596Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10258 2054..2596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10258.1.1prot_D-mesarthrocarpus_Contig10258.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10258 2054..2596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10258.1.1

>prot_D-mesarthrocarpus_Contig10258.1.1 ID=prot_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=181bp
CLPCLLSKSAQVTHLKVGSSKEYGILGPVSIYLQGPFTASSMSRARYVCS
FSEKATRIKFVYFVSQKPYTQRTLADFLKFRVIPTGLRVQLLHSDNGGEC
FGDALRAFVASHGITQRFSSPYTPRQHIISDRGGGKITAMTRCPLVDSGL
AANLWTDLYATLTRRPQKDSRKSHLSLICV*
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mRNA from alignment at D-mesarthrocarpus_Contig10258:2054..2596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10258.1.1 ID=mRNA_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ (Discosporangium mesarthrocarpum MT17_79)
TGCCTACCTTGTCTCTTATCTAAAAGTGCTCAAGTCACGCACCTTAAGGT TGGTTCATCCAAGGAATACGGGATACTTGGACCTGTGTCCATTTATCTCC AAGGGCCTTTCACGGCTTCATCCATGAGCCGTGCGAGGTATGTTTGCTCC TTTTCTGAAAAGGCCACCAGGATTAAGTTTGTTTACTTCGTTTCACAGAA GCCTTACACACAGAGAACCTTGGCCGACTTCCTTAAATTTCGGGTTATTC CTACGGGCCTTCGTGTGCAACTTCTGCACTCTGACAATGGGGGAGAGTGC TTTGGGGATGCACTTCGTGCTTTTGTCGCCAGTCATGGAATTACACAAAG ATTCTCTTCCCCCTACACACCGCGTCAACACATCATCAGTGACCGTGGTG GTGGCAAGATTACTGCTATGACCCGGTGCCCTTTGGTCGACTCTGGTTTA GCTGCCAATCTCTGGACAGATTTATATGCAACATTAACACGTCGCCCACA AAAGGACTCAAGAAAATCCCATCTCTCTCTCATTTGCGTGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10258:2054..2596+

>mRNA_D-mesarthrocarpus_Contig10258.1.1 ID=mRNA_D-mesarthrocarpus_Contig10258.1.1|Name=mRNA_D-mesarthrocarpus_Contig10258.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=543bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10258:2054..2596+ (Discosporangium mesarthrocarpum MT17_79)
TGCCTACCTTGTCTCTTATCTAAAAGTGCTCAAGTCACGCACCTTAAGGT
TGGTTCATCCAAGGAATACGGGATACTTGGACCTGTGTCCATTTATCTCC
AAGGGCCTTTCACGGCTTCATCCATGAGCCGTGCGAGGTATGTTTGCTCC
TTTTCTGAAAAGGCCACCAGGATTAAGTTTGTTTACTTCGTTTCACAGAA
GCCTTACACACAGAGAACCTTGGCCGACTTCCTTAAATTTCGGGTTATTC
CTACGGGCCTTCGTGTGCAACTTCTGCACTCTGACAATGGGGGAGAGTGC
TTTGGGGATGCACTTCGTGCTTTTGTCGCCAGTCATGGAATTACACAAAG
ATTCTCTTCCCCCTACACACCGCGTCAACACATCATCAGTGACCGTGGTG
GTGGCAAGATTACTGCTATGACCCGGTGCCCTTTGGTCGACTCTGGTTTA
GCTGCCAATCTCTGGACAGATTTATATGCAACATTAACACGTCGCCCACA
AAAGGACTCAAGAAAATCCCATCTCTCTCTCATTTGCGTGTGA
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