mRNA_D-mesarthrocarpus_Contig10253.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10253.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10253.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10253.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10253contigD-mesarthrocarpus_Contig10253:2530..3292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size281
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789167.3554323-CDS-D-mesarthrocarpus_Contig10253:2529..27061680789167.3554323-CDS-D-mesarthrocarpus_Contig10253:2529..2706Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10253 2530..2706 -
1680789167.3661172-CDS-D-mesarthrocarpus_Contig10253:3190..32921680789167.3661172-CDS-D-mesarthrocarpus_Contig10253:3190..3292Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10253 3191..3292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10253.2.1prot_D-mesarthrocarpus_Contig10253.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10253 2530..3292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10253.2.1

>prot_D-mesarthrocarpus_Contig10253.2.1 ID=prot_D-mesarthrocarpus_Contig10253.2.1|Name=mRNA_D-mesarthrocarpus_Contig10253.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=93bp
MQVNGEGNLGGIPPPHGIYGDSEEGEEEEVDLGTGFMDPQPRWPQGRNRL
KFALGGKGRKSGKGFQPLHNQDQSLDHGQAEMEAEEDPDLQIN
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10253:2530..3292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10253.2.1 ID=mRNA_D-mesarthrocarpus_Contig10253.2.1|Name=mRNA_D-mesarthrocarpus_Contig10253.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=763bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10253:2530..3292- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGTTAACGGGGAGGGAAACCTCGGAGGAATACCTCCCCCACATGG
GATTTACGGTGACAGTGAGGAGGGGGAAGAGGAGGAGGTGGACCTTGGCA
CGGTGAGGTCTGGGATACGAAGGTGGTCATTTCTTTTGTTCTGGGATATT
GGTGGGCGCGTTGTGAAGACTGCTTTTGACGAACCGTCTTCTCTCCCAGG
CTGGCAGCCCCATCATGATCATGGTGTTGTGCTTGCACGTGAAAGGGCTG
CAAGTAAGATACCTGATGTTTTCTTTCTTTTTGCGATAGGGTACATGCTT
TTGGCCTCTCGAGACTCTTCCTTTTGTGTCCCAACAATGGCACTGACGAC
TGTAACCGAATCAGAGCAAGTGGTGAGAGGTACCGATATATTTTGCTTGT
CCCCCAGTGCAAAAGCTGCAGAGGGATGTGGTAAAACAGGTATGGTGTGC
TTATAGGACATCAGGACTGACTCTTATCTTTTTTAGGGTTATGAGTAGAC
TCATATCCTCCTCTGCCCACCCCCTGTACCGTCCTTTCCCCCTCAAACAC
ATGAACAATATCAAATATGTGAAAAACGTGCGGAAGGGATTTATGGACCC
ACAACCCCGGTGGCCTCAAGGGAGGAACCGGCTGAAGTTTGCCCTGGGGG
GCAAGGGGAGGAAGTCTGGCAAAGGATTCCAGCCATTGCATAACCAAGAT
CAAAGCCTTGACCATGGCCAGGCAGAGATGGAGGCAGAGGAGGATCCAGA
CCTGCAGATCAAC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10253:2530..3292-

>mRNA_D-mesarthrocarpus_Contig10253.2.1 ID=mRNA_D-mesarthrocarpus_Contig10253.2.1|Name=mRNA_D-mesarthrocarpus_Contig10253.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=279bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10253:2530..3292- (Discosporangium mesarthrocarpum MT17_79)
ATGCAGGTTAACGGGGAGGGAAACCTCGGAGGAATACCTCCCCCACATGG
GATTTACGGTGACAGTGAGGAGGGGGAAGAGGAGGAGGTGGACCTTGGCA
CGGGATTTATGGACCCACAACCCCGGTGGCCTCAAGGGAGGAACCGGCTG
AAGTTTGCCCTGGGGGGCAAGGGGAGGAAGTCTGGCAAAGGATTCCAGCC
ATTGCATAACCAAGATCAAAGCCTTGACCATGGCCAGGCAGAGATGGAGG
CAGAGGAGGATCCAGACCTGCAGATCAAC
back to top