mRNA_D-mesarthrocarpus_Contig10247.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10247.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10247.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A835ZH49_9STRA (BEACH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH49_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.160e-25
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +SEHVS+NLHHW+DLIFG KQ    A +A NVFYY+TYY A+DL KI D++LRRATELQIAHFGQ   + F
Sbjct:  279 ESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLF 349          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 3.070e-25
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S++VSQNLHHW+DLIFG KQ  P AE+A NVFYY+TY  AVDLA I+DE LRRATELQIAHFGQ   + F
Sbjct: 1981 ESDYVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQCPAQLF 2051          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S0NBQ1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0NBQ1_9CRYP)

HSP 1 Score: 91.7 bits (226), Expect = 2.380e-22
Identity = 43/71 (60.56%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S+ VS NLHHW+DLIFGCKQ  P AEEA NVFYY+TY    DL  I D  LRR+ E QI  FGQ  R+ F
Sbjct:   12 ESDFVSANLHHWIDLIFGCKQRGPAAEEAVNVFYYLTYEGGADLDAIADPGLRRSAEAQIRSFGQTPRQLF 82          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A482SZ90_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ90_9ARCH)

HSP 1 Score: 95.9 bits (237), Expect = 1.870e-21
Identity = 46/71 (64.79%), Postives = 56/71 (78.87%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S++V+++LH W+DLIFG KQ  P A EA NVFYY+TYY AVD   IEDE+LRRATELQIAHFGQ   + F
Sbjct: 1936 ESDYVTEHLHEWIDLIFGYKQRGPDAVEAKNVFYYLTYYGAVDHYMIEDETLRRATELQIAHFGQVPMQLF 2006          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S2WRZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRZ9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.250e-20
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S+HVS  LHHW+DLIFG +Q    A +A NVFYY+TY   VD+++IED  +RRATELQIAHFGQ  ++ F
Sbjct:  692 ESDHVSSQLHHWIDLIFGYQQRGQAAVQAHNVFYYLTYAGCVDISQIEDPVMRRATELQIAHFGQCPQQLF 762          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S3MHR3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHR3_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.610e-20
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S++V+ +LH W+DLIFG KQ  P A EA NVFYY+TYY +V+   I+DESLRRATELQIAHFGQ   + F
Sbjct:  134 ESDYVTTHLHEWIDLIFGYKQRGPDAVEANNVFYYLTYYGSVNHYMIKDESLRRATELQIAHFGQTPMQLF 204          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S2AUL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AUL0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.600e-20
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +S+HVS+NLH W+DLIFG KQ  P A +A NVFYY+TYY +VDLA I D ++R A E+QIAHFGQ   + F
Sbjct:  272 ESDHVSRNLHKWIDLIFGEKQRGPSAVKADNVFYYLTYYGSVDLASITDSTMRLAYEMQIAHFGQCPMQLF 342          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S1UBP8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBP8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 7.960e-20
Identity = 41/65 (63.08%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQ 195
            +S++VS NLH WVDL+FGC Q    A +  NVF+Y+TYY AVD++ IEDE  R ATELQIAHFGQ
Sbjct:  246 ESDYVSANLHSWVDLVFGCAQQGQEAVKRSNVFFYLTYYGAVDVSAIEDEDKRHATELQIAHFGQ 310          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A7S2SQ02_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SQ02_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.470e-19
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +SE+VSQNLHHW+DLIFG K   P A EA NVFYY+TY  AVD+  I+D ++R ATELQI HFGQ   + F
Sbjct: 2331 ESEYVSQNLHHWIDLIFGYKSRLPEAVEADNVFYYLTYPGAVDMDAIKDPAMRIATELQIKHFGQCPMQIF 2401          
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Match: A0A2R5GHK0_9STRA (BEACH domain-containing protein C2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GHK0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.010e-19
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDESLRRATELQIAHFGQASRRCF 213
            +SE+VS+NLHHWVDLIFG K   P A EA NVFYY+TY  AVDL  I+D ++R ATELQ+ HFGQ   + F
Sbjct: 2737 ESEYVSRNLHHWVDLIFGHKARLPDAVEADNVFYYLTYPGAVDLDSIDDPAMRLATELQVKHFGQCPEQIF 2807          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10247.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH49_9STRA2.160e-2567.61BEACH domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KST8_9PHAE3.070e-2570.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0NBQ1_9CRYP2.380e-2260.56Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A482SZ90_9ARCH1.870e-2164.79DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
A0A7S2WRZ9_9STRA2.250e-2059.15Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3MHR3_9STRA3.610e-2061.97Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2AUL0_9STRA5.600e-2060.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1UBP8_9STRA7.960e-2063.08Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SQ02_9STRA1.470e-1961.97Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A2R5GHK0_9STRA2.010e-1961.97BEACH domain-containing protein C2 n=1 Tax=Hondaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10247contigD-mesarthrocarpus_Contig10247:4065..4277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LFY8
PFAMsBeach,DUF4704,Laminin_G_3,PH_BEACH,WD40
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.03e-26
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Descriptionplatelet formation
Cds size213
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.962382-CDS-D-mesarthrocarpus_Contig10247:4064..42771680789166.962382-CDS-D-mesarthrocarpus_Contig10247:4064..4277Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10247 4065..4277 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10247.3.1prot_D-mesarthrocarpus_Contig10247.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10247 4065..4277 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10247.3.1

>prot_D-mesarthrocarpus_Contig10247.3.1 ID=prot_D-mesarthrocarpus_Contig10247.3.1|Name=mRNA_D-mesarthrocarpus_Contig10247.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=71bp
QSEHVSQNLHHWVDLIFGCKQWSPVAEEAFNVFYYVTYYQAVDLAKIEDE
SLRRATELQIAHFGQASRRCF
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mRNA from alignment at D-mesarthrocarpus_Contig10247:4065..4277-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10247.3.1 ID=mRNA_D-mesarthrocarpus_Contig10247.3.1|Name=mRNA_D-mesarthrocarpus_Contig10247.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10247:4065..4277- (Discosporangium mesarthrocarpum MT17_79)
CAGTCTGAGCATGTGTCCCAGAACCTGCATCACTGGGTGGACCTGATCTT CGGGTGCAAGCAGTGGAGCCCCGTGGCGGAGGAGGCATTTAATGTGTTCT ACTACGTCACCTACTATCAGGCAGTGGATCTGGCCAAGATAGAGGATGAG TCGCTCCGGAGGGCCACAGAGCTGCAGATTGCTCACTTCGGACAGGCTAG CAGAAGATGCTTT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10247:4065..4277-

>mRNA_D-mesarthrocarpus_Contig10247.3.1 ID=mRNA_D-mesarthrocarpus_Contig10247.3.1|Name=mRNA_D-mesarthrocarpus_Contig10247.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=213bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10247:4065..4277- (Discosporangium mesarthrocarpum MT17_79)
CAGTCTGAGCATGTGTCCCAGAACCTGCATCACTGGGTGGACCTGATCTT
CGGGTGCAAGCAGTGGAGCCCCGTGGCGGAGGAGGCATTTAATGTGTTCT
ACTACGTCACCTACTATCAGGCAGTGGATCTGGCCAAGATAGAGGATGAG
TCGCTCCGGAGGGCCACAGAGCTGCAGATTGCTCACTTCGGACAGGCTAG
CAGAAGATGCTTT
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