mRNA_D-mesarthrocarpus_Contig10239.5.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10239.5.1
Unique NamemRNA_D-mesarthrocarpus_Contig10239.5.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A6H5L2A7_9PHAE (Pyruvate carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.170e-31
Identity = 67/102 (65.69%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVEL 306
            VTFELNGQ RVV+V+D+S+AG    R KAD + +GSVGAPMPGVVVG+KV+ G+TVKQGQPLLVLSAMKMETNVAS               NIQG+DLVVE+
Sbjct:  826 VTFELNGQPRVVRVKDKSVAGSITARGKADDSVIGSVGAPMPGVVVGIKVHPGETVKQGQPLLVLSAMKMETNVASPADGIVKALHVKEGDNIQGNDLVVEI 927
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: D8LCR8_ECTSI (Pyruvate carboxylase n=2 Tax=Phaeophyceae TaxID=2870 RepID=D8LCR8_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.180e-31
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVEL 306
            VTFELNGQ RVV+V+D+S+AG    R KAD + +GSVGAPMPGVVVG+KVN G+TVKQGQPLLVLSAMKMETNVAS               NIQG+DLV E+
Sbjct: 1049 VTFELNGQPRVVRVKDKSVAGSITARGKADDSVVGSVGAPMPGVVVGIKVNPGETVKQGQPLLVLSAMKMETNVASPADGIVKALHVKEGDNIQGNDLVAEI 1150
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A836CLQ1_9STRA (Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLQ1_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.480e-23
Identity = 68/103 (66.02%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELK 309
            V FELNGQQR++KV+D ++      R KADP+N GSVGAPMPGVV+GVKV  GD V  GQPL+VLSAMKMET+   XXXXXXXXXXXXXXX     DL+VE++
Sbjct: 1043 VVFELNGQQRIIKVKDNAVGATATHRAKADPSNAGSVGAPMPGVVIGVKVKKGDKVASGQPLVVLSAMKMETSXXXXXXXXXXXXXXXXXXXXXXXDLIVEIE 1145
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A4D9CY33_9STRA (Pyruvate carboxylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY33_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.300e-22
Identity = 57/103 (55.34%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELK 309
            V FELNGQQRV+K +D       K R KAD    GSVGAPMPG+VV VKV +G  VK+GQPLLVLSAMKMET + S               NI G DLVVE++
Sbjct: 1109 VIFELNGQQRVIKTKDTKADVNVKVRPKADLGIPGSVGAPMPGLVVEVKVKVGQAVKKGQPLLVLSAMKMETVLTSPAAGTVKTLLVGAGDNIAGGDLVVEIE 1211
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A835YR17_9STRA (Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR17_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.410e-22
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELKP 312
            V FELNGQQR++KV+D S+      R KADP+ +GSVGAPMPGVV+GVKV  G  VK GQ L+VLSAMKMET+   XXXXXXXXXXXXXXX     DL+++++P
Sbjct: 1084 VVFELNGQQRIIKVKDNSVGASATRRGKADPSMIGSVGAPMPGVVLGVKVKTGARVKAGQSLVVLSAMKMETSXXXXXXXXXXXXXXXXXXXXXXXDLIIDIEP 1187
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A1V9XHA7_9ACAR (Pyruvate carboxylase n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XHA7_9ACAR)

HSP 1 Score: 97.8 bits (242), Expect = 1.570e-21
Identity = 51/104 (49.04%), Postives = 67/104 (64.42%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELKP 312
            V FELNGQ R V + D+++A   +   KAD  N+GSVGAPMPG V+G++V +GD VK+G PL+VLSAMKME  V S                +QG DL+VE++P
Sbjct: 1072 VFFELNGQLRSVFILDKTLAEVIEAHPKADKANVGSVGAPMPGSVIGIRVKVGDVVKKGDPLVVLSAMKMEMVVQSPVAGKVKSLAAAIDMRMQGDDLLVEIEP 1175
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: UPI0002659000 (pyruvate carboxylase, mitochondrial n=1 Tax=Galendromus occidentalis TaxID=34638 RepID=UPI0002659000)

HSP 1 Score: 95.1 bits (235), Expect = 1.380e-20
Identity = 51/104 (49.04%), Postives = 65/104 (62.50%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELKP 312
            V FELNGQ R V V D+++A E     KAD +N GSVGAPMPG V+ ++V +GD VK+G PL+VLSAMKME  V +                +QG DL+VE+ P
Sbjct: 1072 VFFELNGQLRSVLVVDKTLAEEIVSHPKADKSNKGSVGAPMPGSVIDIRVEVGDVVKKGDPLVVLSAMKMEMVVQASVAGKVKNVAVTKDMKLQGEDLLVEIDP 1175
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A662WMI8_9STRA (Lipoyl-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMI8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.820e-20
Identity = 53/102 (51.96%), Postives = 65/102 (63.73%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVEL 306
            V FELNG+QRV+KV+D +    T  + KA  +  GSVGAPMPGVV+ V+V  G+ VK G PLLVLSAMKMET VAS               N+ G DL+VE+
Sbjct:  106 VIFELNGRQRVIKVKDEAAGVTTTAKPKAT-SMAGSVGAPMPGVVLDVRVKKGEMVKAGSPLLVLSAMKMETVVASPVSGRVVSIHADVGDNMLGGDLLVEI 206
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A7M7JEP1_VARDE (Pyruvate carboxylase n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7JEP1_VARDE)

HSP 1 Score: 94.0 bits (232), Expect = 3.510e-20
Identity = 50/104 (48.08%), Postives = 66/104 (63.46%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELKP 312
            V FELNGQ R V V D+++A   +   KAD +N GSVGAPMPG V+ ++V +GD VK+G PL+VLSAMKME  V +                +QG DL+VE++P
Sbjct: 1072 VFFELNGQLRSVFVVDKTLAEVIEAHPKADKSNAGSVGAPMPGSVIDIRVKVGDVVKKGDPLVVLSAMKMEMVVQAPIAGKVRSVAAAKDMRMQGDDLLVEIEP 1175
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Match: A0A6I9PIS1_9TELE (pyruvate carboxylase, mitochondrial-like n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6I9PIS1_9TELE)

HSP 1 Score: 87.8 bits (216), Expect = 4.490e-20
Identity = 50/103 (48.54%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKVNIGDTVKQGQPLLVLSAMKMETNVASXXXXXXXXXXXXXXXNIQGSDLVVELK 309
            V FELNGQ R V V+D     E KF  KA  +  G VGAPMPG VV VKV +G  V++GQPL VLSAMKMET V S               +++G DL++E++
Sbjct:   32 VFFELNGQLRSVLVKDTVAMKEMKFHPKAQKSIKGQVGAPMPGKVVEVKVEVGSKVEKGQPLCVLSAMKMETVVNSPLAGTIKAVHVRADASLEGGDLILEIE 134
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10239.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2A7_9PHAE1.170e-3165.69Pyruvate carboxylase n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LCR8_ECTSI1.180e-3165.69Pyruvate carboxylase n=2 Tax=Phaeophyceae TaxID=28... [more]
A0A836CLQ1_9STRA1.480e-2366.02Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID... [more]
A0A4D9CY33_9STRA1.300e-2255.34Pyruvate carboxylase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A835YR17_9STRA8.410e-2263.46Pyruvate carboxylase n=1 Tax=Tribonema minus TaxID... [more]
A0A1V9XHA7_9ACAR1.570e-2149.04Pyruvate carboxylase n=1 Tax=Tropilaelaps mercedes... [more]
UPI00026590001.380e-2049.04pyruvate carboxylase, mitochondrial n=1 Tax=Galend... [more]
A0A662WMI8_9STRA2.820e-2051.96Lipoyl-binding domain-containing protein n=2 Tax=N... [more]
A0A7M7JEP1_VARDE3.510e-2048.08Pyruvate carboxylase n=2 Tax=Varroa TaxID=62624 Re... [more]
A0A6I9PIS1_9TELE4.490e-2048.54pyruvate carboxylase, mitochondrial-like n=2 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10239contigD-mesarthrocarpus_Contig10239:3291..4134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LCR8
Preferred namePC
PFAMsBiotin_carb_C,Biotin_carb_N,Biotin_lipoyl,CPSase_L_D2,HMGL-like,PYC_OADA
Model size315
Max annot lvl2759|Eukaryota
KEGG rclassRC00040,RC00367
KEGG koko:K01958
KEGG ReactionR00344
KEGG Pathwayko00020,ko00620,ko00720,ko01100,ko01120,ko01200,ko01230,map00020,map00620,map00720,map01100,map01120,map01200,map01230
KEGG ModuleM00173
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004736,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006082,GO:0006090,GO:0006094,GO:0006107,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009374,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010562,GO:0010605,GO:0010629,GO:0016020,GO:0016032,GO:0016051,GO:0016874,GO:0016885,GO:0017076,GO:0017144,GO:0019058,GO:0019068,GO:0019072,GO:0019074,GO:0019216,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019752,GO:0019842,GO:0019866,GO:0030554,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031406,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033218,GO:0033293,GO:0034641,GO:0035639,GO:0035821,GO:0036094,GO:0040012,GO:0040017,GO:0042802,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044281,GO:0044283,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044788,GO:0044789,GO:0044791,GO:0044794,GO:0045834,GO:0045937,GO:0046364,GO:0046483,GO:0046889,GO:0046890,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048524,GO:0050662,GO:0050789,GO:0050792,GO:0050794,GO:0051174,GO:0051186,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060255,GO:0065007,GO:0070013,GO:0071071,GO:0071073,GO:0071704,GO:0080090,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901576,GO:1901681,GO:1902186,GO:1902188,GO:1903725,GO:1903727,GO:1903900,GO:1903902
Exons2
Evalue1.94e-32
EggNOG OGsCOG1038@1|root,KOG0369@2759|Eukaryota
EC6.4.1.1
Descriptionpyruvate carboxylase activity
Cds size315
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.2216802-CDS-D-mesarthrocarpus_Contig10239:3290..34371680789166.2216802-CDS-D-mesarthrocarpus_Contig10239:3290..3437Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10239 3291..3437 +
1680789166.2343023-CDS-D-mesarthrocarpus_Contig10239:3966..41341680789166.2343023-CDS-D-mesarthrocarpus_Contig10239:3966..4134Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10239 3967..4134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10239.5.1prot_D-mesarthrocarpus_Contig10239.5.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10239 3291..4134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10239.5.1

>prot_D-mesarthrocarpus_Contig10239.5.1 ID=prot_D-mesarthrocarpus_Contig10239.5.1|Name=mRNA_D-mesarthrocarpus_Contig10239.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=105bp
VTFELNGQQRVVKVQDRSIAGETKFRTKADPTNLGSVGAPMPGVVVGVKV
NIGDTVKQGQPLLVLSAMKMETNVASPIDGTVTGIHVEEGDNIQGSDLVV
ELKP*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10239:3291..4134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10239.5.1 ID=mRNA_D-mesarthrocarpus_Contig10239.5.1|Name=mRNA_D-mesarthrocarpus_Contig10239.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=844bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10239:3291..4134+ (Discosporangium mesarthrocarpum MT17_79)
GTTACCTTTGAGCTCAATGGGCAGCAGCGCGTCGTGAAGGTTCAGGACCG
TAGCATCGCAGGCGAGACTAAGTTCCGGACCAAGGCTGACCCCACTAACC
TGGGGTCTGTGGGGGCGCCTATGCCCGGTGTTGTTGTGGGCGTCAAGGTG
AGTGGCTCTTGCCTATTATGCCTTACAGGTGGAAGGAGGAGGGGTCAGGG
GTCTGAGGGTGTGTTTTTTCAAAGCAGCTTGCAAGGCTCCTCACCTTGTA
GTTGCTCCTGTAATAGGCCTGCTGCCTCTCATGGACAGGAAATGGCTCCA
TGTGTGTTTAGCCTCAGCACAGCGGCAGATAATGTTCCACACTAGAAGAC
TAGAATTTAAGGGAAGGATGGGTTAGGGGAGTGGGTCACAGGAGTATCTC
CTCTCTACTTGTACTCTGCAGTATTTGCAACCGTTATGTTTCTCTTACTG
CACCTCTTCAATGTGTGAGCTCTTGTTCGTGGGTTGATGAGTGTCTCTCT
CTCTCTCTCCGTTTATGCTCTGCAGCTCTTTGAAGTATGCATAACCCACG
CCCTAACTCTATGTGCGAGCACTCTCCTCACACCCTGAGAGACCCTGCAT
ACCAAACCGTGTTCACCATCGTCCACAAACCACACCTTCCACTTTCTTCC
GGCTCCCTACCTCCCTACCCCGTCAGGTGAACATTGGGGACACAGTGAAG
CAGGGCCAGCCCCTCCTGGTCCTCTCTGCCATGAAGATGGAGACCAACGT
GGCCTCCCCCATTGATGGGACTGTCACCGGCATTCACGTCGAGGAGGGTG
ACAACATTCAGGGCAGTGACCTCGTCGTTGAGCTCAAGCCCTAA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10239:3291..4134+

>mRNA_D-mesarthrocarpus_Contig10239.5.1 ID=mRNA_D-mesarthrocarpus_Contig10239.5.1|Name=mRNA_D-mesarthrocarpus_Contig10239.5.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=315bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10239:3291..4134+ (Discosporangium mesarthrocarpum MT17_79)
GTTACCTTTGAGCTCAATGGGCAGCAGCGCGTCGTGAAGGTTCAGGACCG
TAGCATCGCAGGCGAGACTAAGTTCCGGACCAAGGCTGACCCCACTAACC
TGGGGTCTGTGGGGGCGCCTATGCCCGGTGTTGTTGTGGGCGTCAAGGTG
AACATTGGGGACACAGTGAAGCAGGGCCAGCCCCTCCTGGTCCTCTCTGC
CATGAAGATGGAGACCAACGTGGCCTCCCCCATTGATGGGACTGTCACCG
GCATTCACGTCGAGGAGGGTGACAACATTCAGGGCAGTGACCTCGTCGTT
GAGCTCAAGCCCTAA
back to top