mRNA_D-mesarthrocarpus_Contig10238.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10238.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10238.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 2.050e-89
Identity = 167/336 (49.70%), Postives = 222/336 (66.07%), Query Frame = 2 
Query:    2 LGLGLGSG----------QMESEVGWEEAEPTSFVFTGIFPHEVKG------DEEEELLLFEDVN-QPGKALELLEAREANLVAMEADTSSKLTVLEGDLVGEEALLRALEGKKVLAE---QGDEPEEEIVGAALQIVEQVNKVGDLRLTLEELHRSLSLTRSQLAAVGREISVERAAAEERARFEAHRPTRVPAAPFRFDLVTRGVRIRSYRSAGVIAEEVDFRAWIVVPTPLRPWCGGGDDKDSCMYKETWEALEFLPSRDPMLAREMLDITLLLDKFEVIVSRAQYQTILAIIMGNCAEPWAVCPPLLEWARPDPDVEEGVCRDPLKGRLTAQ 949
            LG+GLG G             SE  WEE EPT FV+TG+FP E KG       EEE +LLFED   + G+ALE L ARE+ L++ E   S+       +LV  EA L   E  +   E    G   +   V A + +V QVN+VGDL+L+L+E   +L   RS+L +V RE + ER    E+ARFEAHRP+RVP AP RFD+V  GV IRSYRSA ++AE +  RAW+VV TPLRPWCGGGD K+S M+   W++L FLP+RDPM A+E LD+T+L+D+ +  ++R+QY TI++I+M N  EPW++CPP++EW + DP+V +GVCRDPL+GR TAQ
Sbjct: 1609 LGVGLGEGGXXXXXXXXXXXXSE--WEEGEPTDFVYTGLFPGEAKGWGGRQGGEEEPVLLFEDETVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEASLSVAEKHQQQLEATADGGTGDGGRVSAVMDVVNQVNRVGDLKLSLDERVETLKRVRSRLESVRREANAERTVQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAENLSLRAWMVVATPLRPWCGGGDAKESGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 1942
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BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 298 bits (764), Expect = 2.220e-88
Identity = 165/346 (47.69%), Postives = 222/346 (64.16%), Query Frame = 2 
Query:    2 LGLGLGSGQMESEVG----------WEEAEPTSFVFTGIFPHEVKG-------DEEEELLLFED-VNQPGKALELLEAREANLVAMEADTSSKLTVLEGDLVGEEALLRALEGKKVLAE------------QGDEPEEEIVGAALQIVEQVNKVGDLRLTLEELHRSLSLTRSQLAAVGREISVERAAAEERARFEAHRPTRVPAAPFRFDLVTRGVRIRSYRSAGVIAEEVDFRAWIVVPTPLRPWCGGGDDKDSCMYKETWEALEFLPSRDPMLAREMLDITLLLDKFEVIVSRAQYQTILAIIMGNCAEPWAVCPPLLEWARPDPDVEEGVCRDPLKGRLTAQ 949
            LG+GLG G M  +            WEE EPT FV+TG+FP E KG       +EE  LLLFED   + G+ALE L ARE+ L++ E   S+       +LV  EA L   E  +   E             G   +   V A + +  QVN+VGDL+L+L+E   +L   RS+L +V RE + ER A  E+ARFEAHRP+RVP AP RFD+V  GV IRSYRSA ++AE++  RAW+VV TPLRPWCGGG  K+S M+   W++L FLP+RDPM A+E LD+T+L+D+ +  ++R+QY TI++I+M N  EPW++CPP++EW + DP+V +GVCRDPL+GR TAQ
Sbjct:  606 LGVGLGEGGMGGDXXXXXXXXXXXEWEEGEPTDFVYTGLFPGEAKGWGGREGEEEEPVLLLFEDEAVEDGQALERLVARESELMSQEDQESAAERKTRAELVTAEAALSVAEKHQQQLEAAXXXXXXXXXADGGTGDGGRVSAVMDVFNQVNRVGDLKLSLDERVETLKRVRSRLGSVRREANAERTAQSEKARFEAHRPSRVPPAPSRFDMVASGVTIRSYRSASLVAEDLSLRAWMVVATPLRPWCGGGAAKESGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCRDPLEGRRTAQ 951
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10238.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K463_9PHAE2.050e-8949.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME4_ECTSI2.220e-8847.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10238contigD-mesarthrocarpus_Contig10238:15..4209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size955
Hectar predicted targeting categoryother localisation
Exons7
Cds size927
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10238.1.1prot_D-mesarthrocarpus_Contig10238.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10238 15..4181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.1042852-CDS-D-mesarthrocarpus_Contig10238:14..2241680789166.1042852-CDS-D-mesarthrocarpus_Contig10238:14..224Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 15..224 -
1680789166.1171076-CDS-D-mesarthrocarpus_Contig10238:770..9111680789166.1171076-CDS-D-mesarthrocarpus_Contig10238:770..911Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 771..911 -
1680789166.1286757-CDS-D-mesarthrocarpus_Contig10238:1674..17621680789166.1286757-CDS-D-mesarthrocarpus_Contig10238:1674..1762Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 1675..1762 -
1680789166.1380818-CDS-D-mesarthrocarpus_Contig10238:2295..24501680789166.1380818-CDS-D-mesarthrocarpus_Contig10238:2295..2450Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 2296..2450 -
1680789166.147893-CDS-D-mesarthrocarpus_Contig10238:2882..30831680789166.147893-CDS-D-mesarthrocarpus_Contig10238:2882..3083Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 2883..3083 -
1680789166.1591082-CDS-D-mesarthrocarpus_Contig10238:3547..36071680789166.1591082-CDS-D-mesarthrocarpus_Contig10238:3547..3607Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 3548..3607 -
1680789166.1723995-CDS-D-mesarthrocarpus_Contig10238:4109..41811680789166.1723995-CDS-D-mesarthrocarpus_Contig10238:4109..4181Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10238 4110..4181 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789166.1833925-UTR-D-mesarthrocarpus_Contig10238:4181..42091680789166.1833925-UTR-D-mesarthrocarpus_Contig10238:4181..4209Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10238 4182..4209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10238.1.1

>prot_D-mesarthrocarpus_Contig10238.1.1 ID=prot_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=309bp
MESEVGWEEAEPTSFVFTGIFPHEVKGDEEEELLLFEDVNQPGKALELLE
AREANLVAMEADTSSKLTVLEGDLVGEEALLRALEGKKVLAEQGDEPEEE
IVGAALQIVEQVNKVGDLRLTLEELHRSLSLTRSQLAAVGREISVERAAA
EERARFEAHRPTRVPAAPFRFDLVTRGVRIRSYRSAGVIAEEVDFRAWIV
VPTPLRPWCGGGDDKDSCMYKETWEALEFLPSRDPMLAREMLDITLLLDK
FEVIVSRAQYQTILAIIMGNCAEPWAVCPPLLEWARPDPDVEEGVCRDPL
KGRLTAQV*
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mRNA from alignment at D-mesarthrocarpus_Contig10238:15..4209-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10238.1.1 ID=mRNA_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4195bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10238:15..4209- (Discosporangium mesarthrocarpum MT17_79)
CCTTGGGCTAGGTCTGGGGAGTGGTCAGATGGAGAGCGAGGTTGGGTGGG
AGGAAGCGGAGCCCACATCATTTGTGTTCACCGGCATTTTCCCACATGAG
GTGGGGTGGGGACTGCCTTCTGTCTGAGGCACTTTTCCATAATAGGGTTG
GGGTTAGGGCAGAATACCGCGTGGTGGTGTAATGTGCTTTAAAGTACTTT
GTAATAAATTTGAAGGGCAGGACTTGTCCTTTCTAGTCCAATTCTTGATG
CAGTTTTCCACGAATTCTAGGGTTAGGGTTGTCGTAGATGTCGTTTGTGC
AGATGAGTTGATGCAACTCAGTTATGCTCTTGTGATGTAATGGTATATGA
GGCATTTAGTACTATTTCTGTACTTCAAAATATTTCTCATGAACAGTATG
TTTATACCGCTACAGTATATTTATACTGCTACGGTATGTCTGAAGGACAC
CGGACACACACCGTGTTGCATCACTGCTGTACGGTAAAACAGTTGGCAGT
TGACTTGCATTTGAAGAATGTGTTTCTCGCCCGTTGAACTGTGGCAGATT
AGAATCTCTTCTTCTTGTCCAAGTTCTATGGTAATGTGTACCTGTCCCTC
AGGTGAAAGGTGATGAGGAGGAGGAGCTGCTTCTCTTCGAGGATGTCAAT
CAGCCTGGCAAGGTATCAGACACAGGGACCCTGCAGAAATGGGGGGTAAA
ACATCATGTTTCAAAGAAGTCGTAAGGTTTTCTTTGTTTTGATGGTTTTA
TGATGCACAAATCGATGACAGGAGAGCCGGTTTGTGTGGGTGATGCTGAT
GAGCCTAGGCATTTGTTTCATAATTTGATCATCTGATTTTTTGCCTTCGT
GATATTTTTAGTGTTTAGTACAAAGTACAGAATGGCGCACTATTTCCAAG
GATTTTTTCTTTTAATAGAGACCTTAACCAGTGGGGAATGTCACATGTTT
TTGCCTGATACCCGTGCACCCAATGTGTGTGAATGTCACATCCCCTTTCC
CGTAACACATTGCCGATCCGCTTTCCCGTACGCAGTTCCCACCTCCCGCT
TCAATCTCATTCATTTCCCCCTCAACCAACTCCACTCAACCTAACCCGGT
CATATTTGCCACCCTGGGCTCTCAAGGCTTTGGAACTTCTCGAGGCCCGT
GAGGCTAACTTGGTTGCCATGGAGGCTGATACCAGTTCAAAGCTGACTGT
GCTGGAGGGCGATCTGGTTGGGGAAGAGGCATTACTGAGGGCACTGGAAG
GGAAGAAGGTGTTAGCCGAGCAGGGAGATGAACCAGAAGAGGAAATAGTG
GGGGCTGCCCTGCAAATTGTGGAACAGGTGCAATGTTCCCTGCTTACCAG
CACGTTTTACTTTCAAAGTACAAAATGCAATCTTTTTTTTGTAGTACTAG
TACACAGTGTGGCTCTGCTTGGTACAGAAATAATTGGTGCACATTCTGTT
TTTGTGATTTGTTGGTACAAATCTGTTTTTGTGCTTTGTGGGTGTAATCT
TTGTGTGCTGAGTCAGGGTGAGAGGCAGGCATGGGGAGTGGGTGACAGCC
ACAGTGACAGAGGAAAATGAGATCATGTCTCCACACAAAACACTACATGC
TGCAGTACATAGAGTAGTGCATCAAATGCTTAGCCCTACTTATTACGATC
CTGCAGCGGAGATCTGTTTCCTTTTTCTTTTCATTTTCCTTCAAGAGCTG
CAACCTTTTGGCTCAGTTTTTGACCTCAATTTTATGGTAATTATTTCACG
CCACCCAAGGTGAACAAGGTGGGAGACCTTCGACTTACATTGGAGGAGTT
GCACAGGTCCCTCAGCCTCACACGATCACAACTGGCAGCAGTGGGCAGGG
AGATTTCTGTTGAGAGGGCTGCTGCAGAGGAGAGGGCTCGCTTTGAGGCA
CACAGACCCACAAGGTGTGGATCAGGTTGCACTTATTCATTGCCTTGATC
TTACTGGTGGGAGTTTTTTTTGGTATGTTTTGAGTGATGGGAGTGATAGC
AGGAGGTTGTCAATTGACATGTTACTGTTGTGCATTAGAGCTCTGCTGTA
ATGTAGGGTCTGGAGTGCTTCTCAAAGTACTTCAAAGAAATAAAAATCAG
GTGATTTTTTTTAGTTTCTGAGCCTGGTGGAGGAAGATTTTGGAGTAGTT
GATTCACCTGGTATTAAACATCCATTATGAATTACTTTGTGATATTTTCA
TCAAAGGGCTAGCATATGGGTTGGGCTACACTCCATCAACTGTTTGAAAC
CACTCTGCTTGGGGTGGACAATGACCCATAACCCTAACCCTATCCTCAAA
TAATCTATCGTCTGGAGCTAGGGATCAACTTCGTACAAGCATGGTAGATC
ATCTGTGCAATTTTCCTTAGCCTCCCCCACTCTAGCACCAAACAACCCGT
GTGGCTCTCCTGGACCTCCCTTCTCTCCCTCCCTCCTGCCATACCAGGGT
GCCAGCTGCACCCTTCCGCTTTGACCTGGTAACGAGGGGGGTGAGGATAC
GCTCATATCGCTCAGCTGGTGTCATTGCAGAAGAGGTGTGCTGCGCCGTT
TCATATTGCGGTTTTGTACTTTTTTCGTTCTCTTGTTGGTCTTCTTTGGT
TCTTGGGGCCTGGATTGTTTTGTGGCTTTTTTTTTTTTCAAGTAGTTTAC
GCTTAATGGACTAAGGTACCCTGGTCTTGGGATTGGATGGGATGGGGAAG
TGGGAGGAAGGTAGTTTTTCAAATGGAAGGTCGCAGGTTGCGGCAGATTA
AGGCTCAGCATTGAATAGATTACAGTTCAAACTAATACTTAGGTACATAA
GAAGTATTACTGAAGTACATTAGAAGTAATACTGAAGTACAATGGAAGTA
GTACTGAAGTACATTAGAAGTAATACTGAAGGACATTAGAGGTAATACTA
AAGCACATTAGAGGAAGGTTTTTCACCGAGTTTGTGTTTGTGTAGCCTTA
AAGATTTTTTCTACGAGGTTCAGGAATCCTCAGGGAAAAATGTCTGAATT
TGCTTTTTTTATTTGGTTTCACTCCACTATGATGTTCATTCCTTTGGTTT
TCCTGAATCGTTGGTTGCCCTCGACCCTTGCCATGTTCAAGTTGGAGATG
TCTATAACTGCTTTGAAGTATGTTGTTTTCTTCACGCTTTCCTTGGAATT
GACTTGGAATATGTGAAGTTTTACTGCCTTGTATTGCTTTCATGTATGCA
GAGCTCTGTATGCCTAAAAGTACATTTGCTTTTGTTTTTGCTTTTGTTTT
TGCTTTTGTTTTTTCTTTTGTTTTTGTTTTTTTCGTTTTTTTTGATAGGT
TGATTTTCGTGCATGGATTGTCGTGCCGACACCATTGCGTCCCTGGTGTG
GAGGGGGGGATGACAAAGATTCCTGCATGTACAAGGAGACATGGGAAGCA
CTGGAATTCCTGCCTTCAAGGGACCCCATGCTGGCAAGGGTGAGTGAGGG
AGGTCAACTCACAGAGGTGTATATATTTTGGACTTTGAAATTCAGTACTT
CATGAAGTGCTTTGATATACCTTGGAAGTACCTTGAAGTTGCACGTTTAC
ATTCTATGTGGTTACATCATATGTATATATATATCATACATATATTGCAT
ACACCTATTGCGTACATACTTGCAGTACGTCCTAGAAGTTCTTCAAAGAA
GTACCAAGTACCAAGTATTACTTTCAGTACTTAGAAAGAATAAGGATCTG
TATTTTTTTAGTATTAAGTATGTGCCAGTGGATATCTTAAATAGCTTGGA
TATCTTGACAATCTTGGATACCTTGGATACCTTGGATACCTTAACTATCT
TGGATACCTTGGGTGTCTTGCATATCGTAGATATCTTGAATGTCTTGCAT
ATCTTGGGTATCTTGACTTTCTTGGACTTCTTGACTACCTTGGATGTCTC
GGATATCTTGGATACCCGGAGTCCCCCACATGCCTTGCCAATGGGAACCA
TCTCACTGTCGAATGACAAAAACAAACACGTCCAGGAAATGCTGGACATA
ACCCTACTTCTGGACAAGTTCGAGGTCATTGTCTCGAGGGCACAATACCA
AACTATACTGGCCATCATCATGGGGAACTGTGCTGAGCCTTGGGCGGTGT
GCCCACCTCTTCTGGAGTGGGCCAGACCTGATCCGGACGTTGAAGAGGGT
GTGTGCAGAGACCCCTTAAAGGGAAGGCTCACTGCTCAGGTTTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10238:15..4209-

>mRNA_D-mesarthrocarpus_Contig10238.1.1 ID=mRNA_D-mesarthrocarpus_Contig10238.1.1|Name=mRNA_D-mesarthrocarpus_Contig10238.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=927bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10238:15..4209- (Discosporangium mesarthrocarpum MT17_79)
ATGGAGAGCGAGGTTGGGTGGGAGGAAGCGGAGCCCACATCATTTGTGTT
CACCGGCATTTTCCCACATGAGGTGAAAGGTGATGAGGAGGAGGAGCTGC
TTCTCTTCGAGGATGTCAATCAGCCTGGCAAGGCTTTGGAACTTCTCGAG
GCCCGTGAGGCTAACTTGGTTGCCATGGAGGCTGATACCAGTTCAAAGCT
GACTGTGCTGGAGGGCGATCTGGTTGGGGAAGAGGCATTACTGAGGGCAC
TGGAAGGGAAGAAGGTGTTAGCCGAGCAGGGAGATGAACCAGAAGAGGAA
ATAGTGGGGGCTGCCCTGCAAATTGTGGAACAGGTGAACAAGGTGGGAGA
CCTTCGACTTACATTGGAGGAGTTGCACAGGTCCCTCAGCCTCACACGAT
CACAACTGGCAGCAGTGGGCAGGGAGATTTCTGTTGAGAGGGCTGCTGCA
GAGGAGAGGGCTCGCTTTGAGGCACACAGACCCACAAGGGTGCCAGCTGC
ACCCTTCCGCTTTGACCTGGTAACGAGGGGGGTGAGGATACGCTCATATC
GCTCAGCTGGTGTCATTGCAGAAGAGGTTGATTTTCGTGCATGGATTGTC
GTGCCGACACCATTGCGTCCCTGGTGTGGAGGGGGGGATGACAAAGATTC
CTGCATGTACAAGGAGACATGGGAAGCACTGGAATTCCTGCCTTCAAGGG
ACCCCATGCTGGCAAGGGAAATGCTGGACATAACCCTACTTCTGGACAAG
TTCGAGGTCATTGTCTCGAGGGCACAATACCAAACTATACTGGCCATCAT
CATGGGGAACTGTGCTGAGCCTTGGGCGGTGTGCCCACCTCTTCTGGAGT
GGGCCAGACCTGATCCGGACGTTGAAGAGGGTGTGTGCAGAGACCCCTTA
AAGGGAAGGCTCACTGCTCAGGTTTGA
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