mRNA_D-mesarthrocarpus_Contig10231.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10231.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10231.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10231contigD-mesarthrocarpus_Contig10231:3889..4017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G649
Preferred nameREC8
PFAMsRad21_Rec8,Rad21_Rec8_N
Model size129
Max annot lvl2759|Eukaryota
KEGG koko:K06670,ko:K10262,ko:K12780,ko:K13054,ko:K19755
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000798,GO:0000800,GO:0000819,GO:0000939,GO:0000941,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005819,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007135,GO:0007140,GO:0007141,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007548,GO:0008150,GO:0008152,GO:0008278,GO:0008406,GO:0008584,GO:0008608,GO:0009566,GO:0009987,GO:0009994,GO:0010789,GO:0015630,GO:0016043,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030893,GO:0031618,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034991,GO:0035295,GO:0035825,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045132,GO:0045137,GO:0045143,GO:0045144,GO:0046483,GO:0046546,GO:0046661,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048515,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051177,GO:0051276,GO:0051316,GO:0051321,GO:0051455,GO:0051704,GO:0051716,GO:0051754,GO:0061458,GO:0061982,GO:0061983,GO:0070013,GO:0070192,GO:0070193,GO:0070601,GO:0071695,GO:0071704,GO:0071840,GO:0072520,GO:0072687,GO:0090304,GO:0098687,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1903046
Exons1
Evalue4.36e-09
EggNOG OGsKOG1213@1|root,KOG1213@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size129
COG categoryS
BRITEko00000,ko00001,ko03036,ko04121,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.8533955-CDS-D-mesarthrocarpus_Contig10231:3888..40171680789165.8533955-CDS-D-mesarthrocarpus_Contig10231:3888..4017Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10231 3889..4017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10231.1.1prot_D-mesarthrocarpus_Contig10231.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10231 3889..4017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10231.1.1

>prot_D-mesarthrocarpus_Contig10231.1.1 ID=prot_D-mesarthrocarpus_Contig10231.1.1|Name=mRNA_D-mesarthrocarpus_Contig10231.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=43bp
RHTLRRRRLSAHPAFQGFDTRSEGHVTLDQMERVLSSFGILPE
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mRNA from alignment at D-mesarthrocarpus_Contig10231:3889..4017+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10231.1.1 ID=mRNA_D-mesarthrocarpus_Contig10231.1.1|Name=mRNA_D-mesarthrocarpus_Contig10231.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10231:3889..4017+ (Discosporangium mesarthrocarpum MT17_79)
CGACACACCTTGCGCAGGCGACGGCTCTCGGCCCACCCAGCTTTCCAAGG
CTTTGACACACGCAGTGAGGGACACGTGACACTGGACCAGATGGAACGGG
TCTTGTCCTCCTTCGGCATACTGCCCGAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10231:3889..4017+

>mRNA_D-mesarthrocarpus_Contig10231.1.1 ID=mRNA_D-mesarthrocarpus_Contig10231.1.1|Name=mRNA_D-mesarthrocarpus_Contig10231.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=129bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10231:3889..4017+ (Discosporangium mesarthrocarpum MT17_79)
CGACACACCTTGCGCAGGCGACGGCTCTCGGCCCACCCAGCTTTCCAAGG
CTTTGACACACGCAGTGAGGGACACGTGACACTGGACCAGATGGAACGGG
TCTTGTCCTCCTTCGGCATACTGCCCGAG
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