mRNA_D-mesarthrocarpus_Contig10225.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10225.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10225.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10225.1.1 vs. uniprot
Match: D8LIJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ2_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 3.950e-13
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   19 SLRGSHNASCPCSILFNTSSLELSGAISSLGEMVTTGEGTEVAVWSFNQ 165
            SLRG  NASCPC+I+FNTSSL L GAIS+ GE+  T EGTEVAVWSF+Q
Sbjct:  502 SLRG-ENASCPCTIVFNTSSLSLEGAISAAGELALTAEGTEVAVWSFDQ 549
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10225.1.1 vs. uniprot
Match: A0A835YHE6_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHE6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.700e-8
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   19 SLRGSHNASCPCSILFNTSSLELSGAISSLGEMVTT-GEGTEVAVWSFNQAR 171
            SL  +  A+CPC +LFNTSSL+L+GA+++   +VT  G G E AVWSF Q R
Sbjct:  530 SLAAAAAAACPCRLLFNTSSLQLTGAVNATATLVTAPGSGAETAVWSFEQVR 581
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10225.1.1 vs. uniprot
Match: A0A7S2RHA5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RHA5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.910e-7
Identity = 23/37 (62.16%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:   52 CSILFNTSSLELSGAISSLGEMVTTGEGTEVAVWSFN 162
            CS+LFNTSSLEL GA+++ G +  T +GTE+AVWSF+
Sbjct:    2 CSLLFNTSSLELKGAVNATGTVSITPDGTEIAVWSFD 38
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig10225.1.1 vs. uniprot
Match: A0A7S2LHA4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LHA4_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 6.240e-6
Identity = 22/49 (44.90%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   16 QSLRGSHNASCPCSILFNTSSLELSGAISSLGEMVTTGEGTEVAVWSFN 162
            Q+L  S   +  C ++FNTSSL+L+GA+++ G +VT  +GTE+A+W+F+
Sbjct:  494 QTLSSSQCVNTLCELVFNTSSLDLTGAVNATGTLVTQDDGTEIALWAFD 542
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10225.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIJ2_ECTSI3.950e-1373.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YHE6_9STRA5.700e-853.852Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2RHA5_9STRA4.910e-762.16Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2LHA4_9STRA6.240e-644.90Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10225contigD-mesarthrocarpus_Contig10225:678..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIJ2
PFAMsEF-hand_5,Glyco_hydro_43
Model size180
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue6.47e-14
EggNOG OGs28K2B@1|root,2QSGV@2759|Eukaryota
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789165.8131738-CDS-D-mesarthrocarpus_Contig10225:677..8571680789165.8131738-CDS-D-mesarthrocarpus_Contig10225:677..857Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10225 678..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10225.1.1prot_D-mesarthrocarpus_Contig10225.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10225 678..857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10225.1.1

>prot_D-mesarthrocarpus_Contig10225.1.1 ID=prot_D-mesarthrocarpus_Contig10225.1.1|Name=mRNA_D-mesarthrocarpus_Contig10225.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=60bp
MAGEKQSLRGSHNASCPCSILFNTSSLELSGAISSLGEMVTTGEGTEVAV
WSFNQARDR*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10225:678..857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10225.1.1 ID=mRNA_D-mesarthrocarpus_Contig10225.1.1|Name=mRNA_D-mesarthrocarpus_Contig10225.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=180bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10225:678..857- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGGGGAAAAGCAGAGCTTGCGCGGCTCCCACAATGCTTCCTGCCC
ATGCAGCATCTTGTTCAACACCTCAAGTCTGGAGCTAAGTGGAGCCATCT
CCTCACTGGGTGAAATGGTGACCACAGGAGAGGGCACTGAGGTTGCAGTG
TGGTCGTTCAATCAGGCAAGGGATCGGTAA
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10225:678..857-

>mRNA_D-mesarthrocarpus_Contig10225.1.1 ID=mRNA_D-mesarthrocarpus_Contig10225.1.1|Name=mRNA_D-mesarthrocarpus_Contig10225.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=180bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10225:678..857- (Discosporangium mesarthrocarpum MT17_79)
ATGGCTGGGGAAAAGCAGAGCTTGCGCGGCTCCCACAATGCTTCCTGCCC
ATGCAGCATCTTGTTCAACACCTCAAGTCTGGAGCTAAGTGGAGCCATCT
CCTCACTGGGTGAAATGGTGACCACAGGAGAGGGCACTGAGGTTGCAGTG
TGGTCGTTCAATCAGGCAAGGGATCGGTAA
back to top