mRNA_D-mesarthrocarpus_Contig10211.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10211.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10211.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10211.1.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.400e-13
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 2 
Query:  569 PVALGMSVQLCRSSGFGGPGTFAVVFLHMFGKMIKLFGDDAVTNLGKDGYDEDDA 733
            PVA+ +SV+LC+SSGFGGPGTF VVFLHMF K+++LFGDD   +  +DGYDEDDA
Sbjct:   91 PVAMFVSVKLCQSSGFGGPGTFVVVFLHMFIKLLQLFGDDDFADSERDGYDEDDA 145
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10211.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHF5_ECTSI1.400e-1369.09Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10211contigD-mesarthrocarpus_Contig10211:326..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LHF5
PFAMsLipase_3
Model size1268
Max annot lvl2759|Eukaryota
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.54e-14
EggNOG OGs2DUDU@1|root,2QVZS@2759|Eukaryota
EC3.1.1.3
DescriptionLipase (class 3)
Cds size684
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.6587188-UTR-D-mesarthrocarpus_Contig10211:325..9081680789164.6587188-UTR-D-mesarthrocarpus_Contig10211:325..908Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10211 326..908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.6733382-CDS-D-mesarthrocarpus_Contig10211:908..10341680789164.6733382-CDS-D-mesarthrocarpus_Contig10211:908..1034Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10211 909..1034 +
1680789164.6843963-CDS-D-mesarthrocarpus_Contig10211:1535..18501680789164.6843963-CDS-D-mesarthrocarpus_Contig10211:1535..1850Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10211 1536..1850 +
1680789164.6928725-CDS-D-mesarthrocarpus_Contig10211:1874..21171680789164.6928725-CDS-D-mesarthrocarpus_Contig10211:1874..2117Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10211 1875..2117 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10211.1.1prot_D-mesarthrocarpus_Contig10211.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10211 909..2117 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10211.1.1

>prot_D-mesarthrocarpus_Contig10211.1.1 ID=prot_D-mesarthrocarpus_Contig10211.1.1|Name=mRNA_D-mesarthrocarpus_Contig10211.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=228bp
MSVQLCRSSGFGGPGTFAVVFLHMFGKMIKLFGDDAVTNLGKDGYDEDDA
SSLHRPRALRGFRNSIDEEDIINAAFPPLGEAAEAAAAAAEAEEARRSGG
APVVLEADGASLGAGAGGPGVSLVDREAIEHRGRAGAGAGAGTVAQAGAG
ISWREGGDASANNWTLEGASGGLREEPGGQSRRGRDSGRAISSHTHSRLI
REGAFPTVQASGRVGLVKQQGGLIEVEG
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mRNA from alignment at D-mesarthrocarpus_Contig10211:326..2117+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10211.1.1 ID=mRNA_D-mesarthrocarpus_Contig10211.1.1|Name=mRNA_D-mesarthrocarpus_Contig10211.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1792bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10211:326..2117+ (Discosporangium mesarthrocarpum MT17_79)
GTTTCTGTGGTTGGTTTCTTTTTTTTGTCTTTCTCCGCCAGGATCCTGCT
AGGCTGGGGCTGTAGAGCTGAGGCTGTGTAGCTATAGGGTTTTTTAGAGC
TCCCAAGTCGGGAGGCGGTGTGCAGTTTTCGGGTCAACTTCTTTTCCACT
CACCTGTAGGGCGTGAAAAGATCGTGAGACTCCTCTTTCTGCTCCATGAC
ATAAGAGTTTTTGGCAGAAGGCCCCACCCACGATGCCCCCGGCACCTGGG
ACCTTCCCCCCTGACCCCCCACCCCATCCCACCCCGCCCCACTCCGCAGC
TGTCCCCCTGACCTGTGTTCTGTTCCGCCCTGGCCCTGGCTCTGGCTCTG
GCTCTGGCTCTGGCTATGACCCCCTTTGTTTCCTCCGATACTATCATCAT
ATCTTCCACCATTGTTGATCTATCCTGCTCTCCAAGGTGCTGGCGCGTGC
TTGAAGCGTGAAGGAACTAACTGTTTTTTGTTTTTTTTTTAATAAATGTG
GGATTTATTTGTGCCTCCTCTGCCTCACTTTCAACAACAACGACGACGAC
GACAACAACAAAAAAGTCCCAGTGGCTCTGGGCATGTCAGTGCAGCTCTG
TAGGTCCAGTGGCTTCGGCGGGCCAGGAACATTCGCGGTGGTGTTCCTAC
ACATGTTTGGCAAGATGATCAAGCTCTTTGGAGACGATGCAGTCACCAAC
CTTGGGAAGGTGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGGAGAGGAGA
GGAGAGGGGAGGACAAGGGCCAAGTGCTCTCGCCGGTTTCACCCCGGTTC
CGTGCCTCTGAGACGCACGCCAGGTAGGTCGCCGCAGTTCTGTACGGTAC
TGTGCGGGTGCTGCTACGGCCCGTTCGAAACGCTCTGTGGCAGCCGCTGG
ATTGCTCTGTGGTAGTTTTTATTATTTTGTGCTGGCGAGTCGCATTGCCA
TACAGTGTGTGTGACGGCTAGGGTTAGGGTTGAGGTTGTTTTTGTTTGTT
TTTTGTTGGGGGCTATTTAAAAACAAGCTCTTCTCCTGAGCTTGACAGGG
TAACAGAACAATGGGGATGTTGAGACTTCCAGGGTGAAGGTGTGTGTGTC
GGATGGGGTGGAAACATTTGCCCTCCAGAATGAGCTGCCCTCCGTCAAAC
CAGAGCTGCCCTCATCCTCTGTGAAACCATCACCAAACCCTTACAAAATC
AAACCGTCAGGATGGATATGATGAGGACGATGCCTCGTCTCTGCACCGTC
CCCGCGCCTTGCGTGGCTTTAGGAACTCCATTGATGAGGAGGATATAATC
AACGCTGCTTTTCCGCCTCTCGGGGAGGCAGCGGAGGCTGCTGCTGCAGC
TGCTGAGGCTGAGGAGGCCAGAAGGTCAGGAGGAGCTCCAGTGGTCCTGG
AGGCTGATGGTGCTAGCCTAGGAGCAGGTGCTGGTGGCCCAGGGGTGTCC
CTGGTGGACAGGGAAGCAATAGAGCACAGGGGCAGGGCTGGGGCTGGGGC
AGGGGCGGGGACTGTGGCACAGGCTGAGCCGGAGCCTGAGCCTGTTGGCG
GTGCTGGCATTTCATGGAGAGAGGGGGGTGATGCCTCAGCAAACAATTGG
ACCCTAGAGGGAGCCAGTGGTGGGTTGAGGGAAGAGCCTGGGGGTCAGAG
CAGGCGGGGGAGAGACAGTGGGAGAGCAATTAGTAGTCATACCCACTCCA
GGCTAATCAGGGAAGGGGCCTTCCCCACAGTGCAGGCCAGTGGAAGGGTG
GGCCTGGTAAAGCAGCAGGGGGGCCTGATAGAGGTGGAGGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10211:326..2117+

>mRNA_D-mesarthrocarpus_Contig10211.1.1 ID=mRNA_D-mesarthrocarpus_Contig10211.1.1|Name=mRNA_D-mesarthrocarpus_Contig10211.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=684bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10211:326..2117+ (Discosporangium mesarthrocarpum MT17_79)
ATGTCAGTGCAGCTCTGTAGGTCCAGTGGCTTCGGCGGGCCAGGAACATT
CGCGGTGGTGTTCCTACACATGTTTGGCAAGATGATCAAGCTCTTTGGAG
ACGATGCAGTCACCAACCTTGGGAAGGATGGATATGATGAGGACGATGCC
TCGTCTCTGCACCGTCCCCGCGCCTTGCGTGGCTTTAGGAACTCCATTGA
TGAGGAGGATATAATCAACGCTGCTTTTCCGCCTCTCGGGGAGGCAGCGG
AGGCTGCTGCTGCAGCTGCTGAGGCTGAGGAGGCCAGAAGGTCAGGAGGA
GCTCCAGTGGTCCTGGAGGCTGATGGTGCTAGCCTAGGAGCAGGTGCTGG
TGGCCCAGGGGTGTCCCTGGTGGACAGGGAAGCAATAGAGCACAGGGGCA
GGGCTGGGGCTGGGGCAGGGGCGGGGACTGTGGCACAGGCTGGTGCTGGC
ATTTCATGGAGAGAGGGGGGTGATGCCTCAGCAAACAATTGGACCCTAGA
GGGAGCCAGTGGTGGGTTGAGGGAAGAGCCTGGGGGTCAGAGCAGGCGGG
GGAGAGACAGTGGGAGAGCAATTAGTAGTCATACCCACTCCAGGCTAATC
AGGGAAGGGGCCTTCCCCACAGTGCAGGCCAGTGGAAGGGTGGGCCTGGT
AAAGCAGCAGGGGGGCCTGATAGAGGTGGAGGGG
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