mRNA_D-mesarthrocarpus_Contig10210.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10210.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10210.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 7.090e-48
Identity = 72/81 (88.89%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            VTPFQCRLRDCTYSAPL+VNVRYTR  QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV
Sbjct:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 2.410e-42
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1 
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            +TPFQCRLRDCTYSAPL+VNVRYTR  QIVN+ NI IGRIP+MLLSCKC LTGK+EAELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.150e-37
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            +TPFQCRLRDC+YSAP+YVNVRYTR  QIV + N+ IGR+PIML S  C LTGKTE ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 129 bits (324), Expect = 6.960e-37
Identity = 62/81 (76.54%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            VTPFQCRLRDCTYSAPLYVNV+YTR  QIV +NNI IGRIPIML S KC L  K+  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 132 bits (333), Expect = 1.350e-36
Identity = 60/80 (75.00%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV +  + +GR+PIML S KC L+ KTE +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 129 bits (323), Expect = 3.100e-36
Identity = 56/80 (70.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            +PFQCRLRDCTYSAP+YV+VRYTR  QIV +  + +GR+PIML S KC L+GKTE +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 135 bits (340), Expect = 3.470e-35
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            VTPFQCRLRDCTYSAP+ V+VRYTR  QIV +  + IGRIPIML SCKC L G++EAELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: K0SA07_THAOC (DNA-directed RNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SA07_THAOC)

HSP 1 Score: 132 bits (332), Expect = 1.830e-34
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV R  + +GR+PIML S +C L  +TE ELA MKECPYDPGGYF+VKGVEKV
Sbjct:  246 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVRKKVTVGRMPIMLRSSRCLLRDRTERELAAMKECPYDPGGYFIVKGVEKV 325
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 133 bits (334), Expect = 2.230e-34
Identity = 61/80 (76.25%), Postives = 67/80 (83.75%), Query Frame = 1 
Query:    4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            TPFQCRLRDCTYSAP+YVNVRYTR  QIV +  + IGR+PIML S KC L  K+E ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140
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BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 133 bits (334), Expect = 2.240e-34
Identity = 62/80 (77.50%), Postives = 68/80 (85.00%), Query Frame = 1 
Query:    4 TPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCALTGKTEAELADMKECPYDPGGYFVVKGVEKV 243
            TPFQCRLRDCTYSAP+YV+VRYTR  QIV +  I IGR+PIML S KC LTGKT  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10210.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI7.090e-4888.89DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE2.410e-4287.65DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA1.150e-3776.54DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
A0A482SHA3_9ARCH6.960e-3776.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2XTK8_9STRA1.350e-3675.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A7S2EFY4_TRICV3.100e-3670.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
I2CNY0_NANGC3.470e-3575.31DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
K0SA07_THAOC1.830e-3475.00DNA-directed RNA polymerase n=1 Tax=Thalassiosira ... [more]
B8BQM2_THAPS2.230e-3476.25DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QYU8_9STRA2.240e-3477.50DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10210contigD-mesarthrocarpus_Contig10210:64..1392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FP28
Preferred namePOLR3B
PFAMsRNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_4,RNA_pol_Rpb2_5,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size243
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons2
Evalue1.16e-48
EggNOG OGsCOG0085@1|root,KOG0215@2759|Eukaryota
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size243
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789164.6174297-CDS-D-mesarthrocarpus_Contig10210:63..2001680789164.6174297-CDS-D-mesarthrocarpus_Contig10210:63..200Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10210 64..200 +
1680789164.6319141-CDS-D-mesarthrocarpus_Contig10210:1286..13921680789164.6319141-CDS-D-mesarthrocarpus_Contig10210:1286..1392Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10210 1287..1392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10210.1.1prot_D-mesarthrocarpus_Contig10210.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10210 64..1392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10210.1.1

>prot_D-mesarthrocarpus_Contig10210.1.1 ID=prot_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=81bp
VTPFQCRLRDCTYSAPLYVNVRYTRAHQIVNRNNICIGRIPIMLLSCKCA
LTGKTEAELADMKECPYDPGGYFVVKGVEKV
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mRNA from alignment at D-mesarthrocarpus_Contig10210:64..1392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10210.1.1 ID=mRNA_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1329bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10210:64..1392+ (Discosporangium mesarthrocarpum MT17_79)
GTCACCCCTTTCCAGTGCCGTCTGAGAGACTGCACCTACTCTGCCCCACT
GTACGTGAACGTGCGATACACCAGGGCCCATCAGATTGTCAACCGGAACA
ACATTTGTATTGGGCGCATACCCATCATGCTCCTCAGGTTAGGCCTGGGG
GTTTGAGGTTGGGGTTGGGGTCAGGGTTAGGGTTAGGGTCAGGGTTATGG
TCAGGGTCAGGGTGAGTGTTCGGGCTGGGGTCTGTGGGTGTCAAATTGTG
AATCAGAGCAACGCTGGGCAACGGCTGCTTCCGGATGCAAGCCCATGTCG
CTGCTCAGGTTAGGTGGGGAGTTATGGTTGGGGTTATGGTTAGGGTTAAG
GTGATAGGCTTGGGTTTTGGAAGTACGGTTGCGTGTCAAGTAATGGGAAT
CGATGAGCGTGGAAGTTGATTAGACAGTCCTTGTCTCAGGGATTTAGGGT
TAGGGTTAGGGTTTGAGTTCAGGTCAGGGTTAGGGTTAAGGTTAGGGTTA
AGGTTCAAGCTCTAGCACCCATGAAGACAAGACTCATCATGCCTGTGTGC
AGTGAAAGTATTGTTTGTGTCCCCAGCCTTGATCCACGTATGTATAAGGG
TTATGGTTTCTGAGGGTTTGCGCTAGTGTCAGAGGAAGAACAAAGTTGGT
GTTAATTTGTGCCCTCATGCTGATGCCTTGCCATTGCTTTTCTATGCCAG
GTTCTATGTCCTTTTCTTTTCACCAGACCCCTAGCCCTAACCCTAACCCT
AACCTAACCCTAACCTCTCAATGTGTAATGTACCTTGATGCACCCACTCT
TTGCTCAAGAGTTTTTCCTTGAGATTGGAGGCACCCCTGAAGCTGCAGAC
CATGTTGGGTTCATTCTATTCATACTACTGTCATGCCTTGGAGCAGACTT
CTATTAACTTAAGTTGAAGGTATTCTCATGCGTTAGACATATTCTCATGT
GTCAGAGGTGATAATATGTTGTACTGCTGTGAATTGACCTCCTGCCTCTG
TCTCTTTTCCCCAGTTTTTCTTGCTTGTTTCATCTTATTTTTCCTCTTTC
ATCCTGTCTTTTTCTCTTTTCTCCCTTTTCTCCCTTTTCTCCCTCTTCTA
CTCCGTCTTTTGTTCTCCTGCCCCCTTCTCTCTTTCCCCCCTGTCTTTTT
TTCTCAATTCTCTTTCCACCTTTTCTTCCCCCCCCCCCCCCCCCCTCCTT
GTTACCCTGTTTGTTTCCGTCAGCTGCAAGTGTGCTCTCACTGGGAAGAC
AGAGGCTGAGCTTGCAGATATGAAAGAATGCCCTTACGACCCCGGGGGGT
ACTTTGTGGTCAAGGGGGTGGAAAAAGTG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10210:64..1392+

>mRNA_D-mesarthrocarpus_Contig10210.1.1 ID=mRNA_D-mesarthrocarpus_Contig10210.1.1|Name=mRNA_D-mesarthrocarpus_Contig10210.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=243bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10210:64..1392+ (Discosporangium mesarthrocarpum MT17_79)
GTCACCCCTTTCCAGTGCCGTCTGAGAGACTGCACCTACTCTGCCCCACT
GTACGTGAACGTGCGATACACCAGGGCCCATCAGATTGTCAACCGGAACA
ACATTTGTATTGGGCGCATACCCATCATGCTCCTCAGCTGCAAGTGTGCT
CTCACTGGGAAGACAGAGGCTGAGCTTGCAGATATGAAAGAATGCCCTTA
CGACCCCGGGGGGTACTTTGTGGTCAAGGGGGTGGAAAAAGTG
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