mRNA_D-mesarthrocarpus_Contig10198.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10198.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10198.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Match: A0A6H5KKG1_9PHAE (VPS13_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKG1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 2.040e-60
Identity = 167/425 (39.29%), Postives = 217/425 (51.06%), Query Frame = 1 
Query:   76 PRHRQGKHYLVVNRTDRPVWYGQALTTETLLLGPCEETPYSWRNVP--VPGMARMTKELVPSRLCLCLRFSLHHDPQQLPGIGGG---ADEDCEGRMGAWTEPVAVDEPGTCKRLLWMAGAMGRDEGLGSQQASQMGTGVVLPLWVVVVKEGLQSRIELYGEWSFTNHLPRRVQVTWSVAISPSDSLRRQSDPLGTRGTLKLGPSGKNQADDQRGGGRLASRFDQRSRASETSALSACLGPGNAASGEGWTSELMLEFRVRALNNRSVAVGSIGPPPVATQGFNDEGIGHGARGGRGGAGRRGATTGTGVRTEQVPGLGEAHVLGERT-WSMTRQSEWVEASPGAYISLIACASADPGVTSLWFWCVAEREWVLLADCEACRSGVGGHQRHPGRMSIKLHPLALVTNRCTQSLTAWLGVDGGAGG 1332
            PR R  K Y++ N TDR +W+GQ  TTETL L   EET Y WR +P  +   A   K    SRL L LR +LH    ++ G GGG   A  +  G  GAWTEP  VD  GT K                  + S +   V LPLWV V K GL++RI  +GEW FTNHLP+ +QV W  +    ++ R   +P GTRG L L     +        GR        S  S  +A S+ LG G A  G    SELMLEFR+ +  + +  VGS+GPPPVAT+   D G    A     G G  G+    G+  E + G  E  V    + W +TRQSEWV+A P  +++LI+CAS DPG++   FWCVA R+    A+         GH+ + G+M I LHP+ALV N  +  + A L    G GG
Sbjct: 2793 PRQR-SKRYIITNHTDRNLWFGQVSTTETLFLRAGEETLYRWRTIPRTLAAGAAGRKGDDASRLVLMLRLALH----RVSGSGGGYAGAGSERGGWYGAWTEPFPVDHVGTFK------------------EESDL---VTLPLWVEVDKNGLETRIAFHGEWVFTNHLPQEIQVAWVTSAGVGNAGRCLVEPTGTRGGLSLEACSTS--------GRADGSLHPVS-CSALTASSSSLGTGQAQGGR--LSELMLEFRL-STPDAAAFVGSVGPPPVATE---DLGGHPAAARDADGLGDGGSYDRRGLDDELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGG 3167
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BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Match: D8LCN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN3_ECTSI)

HSP 1 Score: 159 bits (402), Expect = 1.380e-40
Identity = 127/338 (37.57%), Postives = 166/338 (49.11%), Query Frame = 1 
Query:  343 GRMGAWTEPVAVDEPGTCKRLLWMAGAMGRDEGLGSQQASQMGTG------VVLPLWVVVVKEGLQSRIELYGEWSFTNHLPRRVQVTWSVAISPSDSLRRQSDPLGTRGTLKLGPSGKNQADDQRGGGRLASRFDQRSRASETSALSACLGPGNAASGEGWTSELMLEFRVRALNNRSVAVGSIGPPPVATQGFNDEGIGHGARG-GRGGAGRRGATTGTGVRTEQVPGLGEAHVLGERT-WSMTRQSEWVEASPGAYISLIACASADPGVTSLWFWCVAEREWVLLADCEACRSGVGGHQRHPGRMSIKLHPLALVTNRCTQSLTAWLGVDGGAGG 1332
            GR   W  P    E     RLL  A A    EG     AS  G G      V LPLWV VVK GL++RI  +GEW F N+LP+ +QV W  +    ++ R   +P GTR  L L       A   R GG L         AS +S       PG   +     SELMLEFR+ +  + +  VGS+GPPPVAT+    +  GH A     GG    G+    G+  E + G  E  V    + W +TRQSEWV+A P  +++LI+CAS DPG++   FWCVA R+    A+         GH+ + G+M I LHP+ALV N  +  + A L    G GG
Sbjct:    5 GRWKQWARPSEEAELAAA-RLLRGAEA----EGQVGADASARGAGHQESDFVTLPLWVEVVKNGLETRIAFHGEWVFANYLPQEIQVAWVTSAGVGNAGRCLVEPTGTREGLSLEAC----ATSGRAGGSLHPLSCSALTASSSS-------PGAGQAHGERLSELMLEFRL-STPDAAACVGSVGPPPVATE----DSAGHPAAARDAGGFADGGSFDSRGLDDELLQGREEIEVDSSGSPWEVTRQSEWVQARPFVFLALISCASTDPGISGFAFWCVASRQASRAAN---------GHRGNLGQMRIDLHPMALVWNGSSIPMRAVLKHRSGGGG 312
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10198.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KKG1_9PHAE2.040e-6039.29VPS13_C domain-containing protein n=2 Tax=Ectocarp... [more]
D8LCN3_ECTSI1.380e-4037.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10198contigD-mesarthrocarpus_Contig10198:1981..4265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LBD2
Preferred nameVPS13B
PFAMsChorein_N,SHR-BD,VPS13,VPS13_C
Model size1354
Max annot lvl2759|Eukaryota
KEGG koko:K19526
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0007034,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016020,GO:0019898,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0044425,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0072594,GO:0072665,GO:0072666
Exons4
Evalue6.47e-65
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size1353
COG categoryU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.8327382-CDS-D-mesarthrocarpus_Contig10198:1980..23791680789162.8327382-CDS-D-mesarthrocarpus_Contig10198:1980..2379Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 1981..2379 +
1680789162.8480299-CDS-D-mesarthrocarpus_Contig10198:2781..29641680789162.8480299-CDS-D-mesarthrocarpus_Contig10198:2781..2964Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 2782..2964 +
1680789162.859848-CDS-D-mesarthrocarpus_Contig10198:3434..38451680789162.859848-CDS-D-mesarthrocarpus_Contig10198:3434..3845Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 3435..3845 +
1680789162.8707054-CDS-D-mesarthrocarpus_Contig10198:3905..42651680789162.8707054-CDS-D-mesarthrocarpus_Contig10198:3905..4265Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10198 3906..4265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10198.3.1prot_D-mesarthrocarpus_Contig10198.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10198 1981..4265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10198.3.1

>prot_D-mesarthrocarpus_Contig10198.3.1 ID=prot_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=451bp
LSPGGSLYQPHPLQSCSRRERVKEQPRHRQGKHYLVVNRTDRPVWYGQAL
TTETLLLGPCEETPYSWRNVPVPGMARMTKELVPSRLCLCLRFSLHHDPQ
QLPGIGGGADEDCEGRMGAWTEPVAVDEPGTCKRLLWMAGAMGRDEGLGS
QQASQMGTGVVLPLWVVVVKEGLQSRIELYGEWSFTNHLPRRVQVTWSVA
ISPSDSLRRQSDPLGTRGTLKLGPSGKNQADDQRGGGRLASRFDQRSRAS
ETSALSACLGPGNAASGEGWTSELMLEFRVRALNNRSVAVGSIGPPPVAT
QGFNDEGIGHGARGGRGGAGRRGATTGTGVRTEQVPGLGEAHVLGERTWS
MTRQSEWVEASPGAYISLIACASADPGVTSLWFWCVAEREWVLLADCEAC
RSGVGGHQRHPGRMSIKLHPLALVTNRCTQSLTAWLGVDGGAGGSAGGGG
*
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mRNA from alignment at D-mesarthrocarpus_Contig10198:1981..4265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10198.3.1 ID=mRNA_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2285bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1981..4265+ (Discosporangium mesarthrocarpum MT17_79)
CTCTCGCCAGGGGGCTCACTGTATCAGCCGCATCCCCTCCAGAGCTGCAG
CAGGAGGGAGAGAGTGAAGGAACAGCCCCGTCACAGGCAAGGGAAGCACT
ACCTCGTTGTAAACCGGACGGATCGCCCGGTGTGGTACGGCCAGGCCCTC
ACCACCGAGACCCTCCTCCTGGGCCCCTGTGAAGAGACGCCCTACAGCTG
GAGGAACGTTCCGGTGCCAGGGATGGCGAGGATGACCAAGGAATTGGTGC
CATCCCGGCTGTGCTTGTGTCTTCGATTTTCCTTGCACCATGACCCCCAG
CAACTGCCAGGGATTGGGGGTGGGGCAGACGAGGACTGCGAAGGGAGGAT
GGGTGCCTGGACTGAGCCAGTGGCAGTGGATGAGCCTGGCACATGCAAGG
TGACTCTGAAACTGAGATGAGATTGGGTCAGACGGCGTGGAAGAGGAGGG
TTGGCTTTGGTTGTCTCCTTCATTCAAAGGGTTCGATAATTGCCAGGTGG
TTCTAGATGGTTTGGCGTGCTTTCCAGCTCAGACCTTGAAGCCCACAGGA
AGATTCCAGACAATGGAAAGCTTTCCCGCTAATGTGCGACTCTGCCTTCC
CTAGCCATGGCTTGCGTGCACTGTATTCACCTTCCCACCTACTCGCCATC
GTTGCAATACTTCATTCTCCATTAACCTTGAAAACCTACAACTCGTTTCC
TTGCCTCCACCCTGCCCCAGCTTTCCTTGTTCACGATCTTCCACCCCCAG
ACTTGCCCCACTTACCCTCAACACGTACCCGCTGTGTTTCATTGTTGGCA
GCGGCTTCTATGGATGGCGGGGGCGATGGGGAGGGATGAGGGACTAGGAA
GTCAGCAAGCCAGTCAAATGGGCACCGGGGTGGTGCTTCCTCTGTGGGTC
GTTGTGGTGAAGGAGGGGCTGCAGAGTCGCATTGAGCTGTACGGGGAATG
GTCCTTTACCAACCACCTTCCTCGCCGAGTACAGGTGGGGGGGGAAGGGT
AGGGCAGAGGGAAGACTGGTGTTTGCTGGGGGGGTACTCGAGAGACGTCA
ACGCAGAGCTAGAGCTCAAGCGGAGATATGCCGAGTGGCGTTCCGGCATG
CTTGAAGGTCGCATCAGTCAGTGCCCTTTCTTGCCTGCGTGGAATGGGTT
TTGCCGTGAGAAGCACGACTGAGACTGTGCTGTCGCTCGTGTTTTCCCTT
CTACCTGCCCAGCCCTGGTGCTGCAGCTCATCGGCAACCAACTTCATGAT
AACAGGATCGATACGTATATATATATATATATATATATATATATATATGT
ATGGGTTTTATGAGTGCAGAGCGATAACGGCATCAACTCTTGTCGAATTC
ACATCTTTTACGCTCGCCTTTTTTTTTTTTTCTGGAACTAACATCACCCC
CCCGTGTGTTTTCCCCCCTCCTCCTCTCCTTTTCCCGCCCGCACTCAAAT
TCAGGTGACCTGGTCCGTGGCAATCAGCCCCAGTGATAGCTTGCGCCGTC
AGTCCGATCCCCTGGGGACCAGGGGCACTCTCAAGCTCGGGCCCTCCGGC
AAGAACCAGGCTGACGACCAACGCGGCGGCGGCAGGCTCGCCAGCCGGTT
TGACCAGCGCAGCAGGGCCTCAGAAACTTCTGCTCTCAGCGCCTGCCTGG
GCCCAGGGAATGCGGCCAGCGGGGAAGGCTGGACCTCGGAGCTAATGCTT
GAATTCCGCGTGAGGGCGCTGAACAACCGCTCTGTAGCCGTGGGCTCCAT
CGGCCCCCCACCGGTGGCGACCCAGGGCTTCAATGATGAAGGCATTGGCC
ACGGGGCACGGGGGGGGAGGGGGGGAGCAGGGCGCAGGGGGGCGACCACG
GGGACGGGAGTGCGGGTGGGGGCGGCGTCTGGGGTTGGCGGCGGAAGCAG
GGGTGCCTTTGGAGCTGGCACGGAGACTGAGCAGGTCCCAGGGCTGGGTG
AGGCACATGTTCTCGGGGAAAGAACGTGGAGCATGACCCGCCAGTCAGAG
TGGGTAGAGGCTAGCCCTGGGGCTTACATTTCACTGATCGCATGCGCCAG
CGCAGACCCCGGGGTGACCAGCCTGTGGTTCTGGTGCGTGGCGGAGAGAG
AGTGGGTTTTGCTGGCGGACTGCGAGGCGTGTCGGTCTGGGGTGGGGGGC
CACCAGCGCCACCCAGGCCGGATGAGCATCAAGCTCCACCCCTTGGCGTT
GGTAACCAATCGCTGTACTCAGTCGCTGACAGCATGGCTTGGGGTGGATG
GGGGAGCGGGGGGCTCAGCGGGGGGGGGGGGGTGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10198:1981..4265+

>mRNA_D-mesarthrocarpus_Contig10198.3.1 ID=mRNA_D-mesarthrocarpus_Contig10198.3.1|Name=mRNA_D-mesarthrocarpus_Contig10198.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=1353bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10198:1981..4265+ (Discosporangium mesarthrocarpum MT17_79)
CTCTCGCCAGGGGGCTCACTGTATCAGCCGCATCCCCTCCAGAGCTGCAG
CAGGAGGGAGAGAGTGAAGGAACAGCCCCGTCACAGGCAAGGGAAGCACT
ACCTCGTTGTAAACCGGACGGATCGCCCGGTGTGGTACGGCCAGGCCCTC
ACCACCGAGACCCTCCTCCTGGGCCCCTGTGAAGAGACGCCCTACAGCTG
GAGGAACGTTCCGGTGCCAGGGATGGCGAGGATGACCAAGGAATTGGTGC
CATCCCGGCTGTGCTTGTGTCTTCGATTTTCCTTGCACCATGACCCCCAG
CAACTGCCAGGGATTGGGGGTGGGGCAGACGAGGACTGCGAAGGGAGGAT
GGGTGCCTGGACTGAGCCAGTGGCAGTGGATGAGCCTGGCACATGCAAGC
GGCTTCTATGGATGGCGGGGGCGATGGGGAGGGATGAGGGACTAGGAAGT
CAGCAAGCCAGTCAAATGGGCACCGGGGTGGTGCTTCCTCTGTGGGTCGT
TGTGGTGAAGGAGGGGCTGCAGAGTCGCATTGAGCTGTACGGGGAATGGT
CCTTTACCAACCACCTTCCTCGCCGAGTACAGGTGACCTGGTCCGTGGCA
ATCAGCCCCAGTGATAGCTTGCGCCGTCAGTCCGATCCCCTGGGGACCAG
GGGCACTCTCAAGCTCGGGCCCTCCGGCAAGAACCAGGCTGACGACCAAC
GCGGCGGCGGCAGGCTCGCCAGCCGGTTTGACCAGCGCAGCAGGGCCTCA
GAAACTTCTGCTCTCAGCGCCTGCCTGGGCCCAGGGAATGCGGCCAGCGG
GGAAGGCTGGACCTCGGAGCTAATGCTTGAATTCCGCGTGAGGGCGCTGA
ACAACCGCTCTGTAGCCGTGGGCTCCATCGGCCCCCCACCGGTGGCGACC
CAGGGCTTCAATGATGAAGGCATTGGCCACGGGGCACGGGGGGGGAGGGG
GGGAGCAGGGCGCAGGGGGGCGACCACGGGGACGGGAGTGCGGACTGAGC
AGGTCCCAGGGCTGGGTGAGGCACATGTTCTCGGGGAAAGAACGTGGAGC
ATGACCCGCCAGTCAGAGTGGGTAGAGGCTAGCCCTGGGGCTTACATTTC
ACTGATCGCATGCGCCAGCGCAGACCCCGGGGTGACCAGCCTGTGGTTCT
GGTGCGTGGCGGAGAGAGAGTGGGTTTTGCTGGCGGACTGCGAGGCGTGT
CGGTCTGGGGTGGGGGGCCACCAGCGCCACCCAGGCCGGATGAGCATCAA
GCTCCACCCCTTGGCGTTGGTAACCAATCGCTGTACTCAGTCGCTGACAG
CATGGCTTGGGGTGGATGGGGGAGCGGGGGGCTCAGCGGGGGGGGGGGGG
TGA
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