mRNA_D-mesarthrocarpus_Contig9985.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9985.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9985.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9985.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9985contigD-mesarthrocarpus_Contig9985:107..1313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size797
Hectar predicted targeting categoryother localisation
Exons2
Cds size777
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.7026246-UTR-D-mesarthrocarpus_Contig9985:106..1251680791147.7026246-UTR-D-mesarthrocarpus_Contig9985:106..125Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9985 107..125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791147.7145083-CDS-D-mesarthrocarpus_Contig9985:125..1671680791147.7145083-CDS-D-mesarthrocarpus_Contig9985:125..167Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9985 126..167 +
1680791147.7257032-CDS-D-mesarthrocarpus_Contig9985:578..13131680791147.7257032-CDS-D-mesarthrocarpus_Contig9985:578..1313Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9985 579..1313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9985.1.1prot_D-mesarthrocarpus_Contig9985.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9985 126..1313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9985.1.1

>prot_D-mesarthrocarpus_Contig9985.1.1 ID=prot_D-mesarthrocarpus_Contig9985.1.1|Name=mRNA_D-mesarthrocarpus_Contig9985.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=259bp
MSAVETTASDFFMFPLPPPRMSGSSSVASSVTFSRQGSRESMSTTSPMSP
AGLTSILGSRRNNPRAEALGARSGTTARPWALVQSTKSSPARPRTPDIPA
PRVRRLSTGRLLPPPGPRGPSSSSSPAPAAFPPSGRRGGPSGSGGTMHPH
PVSRGTPGPQPRAQGYGSLSPSHHRRGRGFSAGNLSPPEEGSAFWQGDRK
GPRASPRLGARPRASPGLGSGPRASPGPALGPRGRSGRRASTGAGPARSD
SRLGETLRA
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mRNA from alignment at D-mesarthrocarpus_Contig9985:107..1313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9985.1.1 ID=mRNA_D-mesarthrocarpus_Contig9985.1.1|Name=mRNA_D-mesarthrocarpus_Contig9985.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1207bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9985:107..1313+ (Discosporangium mesarthrocarpum MT17_79)
GAACCAGGACAAGGCAGACATGAGTGCGGTGGAGACCACAGCCAGCGATT
TCTTCATGTTTGTGAGTCGAGAGTATTCGTTTTCACCTCCCTGCTTCTTG
CTTTATGCATTTTTTTTGCTTTGAATAAACTGCACACCGCATACTGCATG
CTCTGAACCACTCTGAGCTGGTGCCGTTGTCACATATTCGGCTCTAGAGC
GATCTCTTCGTGTTTGCGATCGACCACGCTCTCGTTCACCCTGCACTAAC
TCTATACCTTGTGGGCTTTGTAGACTGGCAAGGCTGTAGGGCTCCAGAGC
TAGTACGATATGCACCGATTCTGTTGGCGGCATTTGATGTCCTACAGTGC
GGGGTGGCACAGTTGTGACACAGTAACTATGCCTGCTACATAAATCTTGA
CCACCCCCTAATTCCTTAATACCCTGTCCCCACCCCCCTGCCCCCCCAAC
CCCCTGCCACCGCCGCCCTCAGCCCCTCCCCCCCCCCCGGATGTCAGGCT
CCTCCAGTGTGGCTAGTTCGGTCACATTCTCGCGCCAGGGCAGCCGTGAA
TCCATGAGCACCACCTCCCCAATGTCTCCAGCAGGGCTCACCTCCATCCT
TGGAAGCCGCCGCAACAACCCCCGTGCTGAGGCTCTGGGTGCCCGGAGTG
GTACCACTGCCAGGCCCTGGGCCCTGGTCCAGAGCACGAAGTCCTCCCCA
GCCCGCCCTAGGACACCCGACATTCCTGCCCCTCGGGTGCGGAGGCTCTC
AACCGGGAGGCTCCTTCCCCCCCCAGGCCCCAGGGGTCCATCGTCCTCAT
CCTCCCCTGCCCCAGCTGCCTTTCCCCCTTCTGGGCGCCGTGGCGGCCCC
AGCGGCAGCGGCGGCACCATGCACCCTCACCCAGTCTCCAGGGGTACCCC
TGGGCCCCAGCCCCGGGCCCAAGGGTATGGCAGCCTCAGCCCCAGCCACC
ACAGACGAGGGCGGGGCTTCTCCGCTGGCAACCTGTCGCCGCCCGAGGAG
GGGTCAGCATTCTGGCAGGGTGATAGAAAGGGGCCCAGAGCATCCCCGAG
GCTGGGAGCAAGGCCCAGGGCATCCCCAGGGCTGGGTTCAGGGCCCAGAG
CATCCCCGGGGCCAGCGCTGGGGCCCAGGGGCAGGTCGGGGAGGAGGGCG
AGCACAGGGGCAGGGCCTGCCAGGAGTGACAGCAGGCTGGGAGAGACCCT
CAGGGCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9985:107..1313+

>mRNA_D-mesarthrocarpus_Contig9985.1.1 ID=mRNA_D-mesarthrocarpus_Contig9985.1.1|Name=mRNA_D-mesarthrocarpus_Contig9985.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=777bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9985:107..1313+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGTGCGGTGGAGACCACAGCCAGCGATTTCTTCATGTTTCCCCTCCC
CCCCCCCCGGATGTCAGGCTCCTCCAGTGTGGCTAGTTCGGTCACATTCT
CGCGCCAGGGCAGCCGTGAATCCATGAGCACCACCTCCCCAATGTCTCCA
GCAGGGCTCACCTCCATCCTTGGAAGCCGCCGCAACAACCCCCGTGCTGA
GGCTCTGGGTGCCCGGAGTGGTACCACTGCCAGGCCCTGGGCCCTGGTCC
AGAGCACGAAGTCCTCCCCAGCCCGCCCTAGGACACCCGACATTCCTGCC
CCTCGGGTGCGGAGGCTCTCAACCGGGAGGCTCCTTCCCCCCCCAGGCCC
CAGGGGTCCATCGTCCTCATCCTCCCCTGCCCCAGCTGCCTTTCCCCCTT
CTGGGCGCCGTGGCGGCCCCAGCGGCAGCGGCGGCACCATGCACCCTCAC
CCAGTCTCCAGGGGTACCCCTGGGCCCCAGCCCCGGGCCCAAGGGTATGG
CAGCCTCAGCCCCAGCCACCACAGACGAGGGCGGGGCTTCTCCGCTGGCA
ACCTGTCGCCGCCCGAGGAGGGGTCAGCATTCTGGCAGGGTGATAGAAAG
GGGCCCAGAGCATCCCCGAGGCTGGGAGCAAGGCCCAGGGCATCCCCAGG
GCTGGGTTCAGGGCCCAGAGCATCCCCGGGGCCAGCGCTGGGGCCCAGGG
GCAGGTCGGGGAGGAGGGCGAGCACAGGGGCAGGGCCTGCCAGGAGTGAC
AGCAGGCTGGGAGAGACCCTCAGGGCA
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