mRNA_D-mesarthrocarpus_Contig9966.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9966.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9966.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9966.2.1 vs. uniprot
Match: D7G904_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G904_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.110e-17
Identity = 56/117 (47.86%), Postives = 71/117 (60.68%), Query Frame = 1 
Query:   31 LYNDDLGVRDSFHYPYSGGDKPFEAHSLPPPRAPLLAGSLPPSRFLDDLPPLALGPQADDEFTTAYGSLGSAWDDSRDVVYAASCPATLGGELFGGSNGRGRAPARSRKASMLALEE 381
            L+  D  ++  F+   +GG       SLPPP+APLLAGSLPPSRFLDDLPPL+LGPQAD+ F +  G+L ++   +R  +YA SCPA +G          GR P  SR  SM  L E
Sbjct:   70 LHTRDRSLQHDFNSGAAGGVNGI-VQSLPPPQAPLLAGSLPPSRFLDDLPPLSLGPQADNSFDSDCGALSTSLKANR--LYATSCPANIGAHF-------GRPPG-SRLQSMSVLAE 175
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9966.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G904_ECTSI1.110e-1747.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9966contigD-mesarthrocarpus_Contig9966:315..1591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size435
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002420.1
Cds size432
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791146.1302733-CDS-D-mesarthrocarpus_Contig9966:316..4781680791146.1302733-CDS-D-mesarthrocarpus_Contig9966:316..478Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9966 317..478 -
1680791146.1415594-CDS-D-mesarthrocarpus_Contig9966:1069..11381680791146.1415594-CDS-D-mesarthrocarpus_Contig9966:1069..1138Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9966 1070..1138 -
1680791146.1524336-CDS-D-mesarthrocarpus_Contig9966:1390..15911680791146.1524336-CDS-D-mesarthrocarpus_Contig9966:1390..1591Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9966 1391..1591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9966.2.1prot_D-mesarthrocarpus_Contig9966.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9966 317..1591 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9966.2.1

>prot_D-mesarthrocarpus_Contig9966.2.1 ID=prot_D-mesarthrocarpus_Contig9966.2.1|Name=mRNA_D-mesarthrocarpus_Contig9966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=144bp
DREGDKGDLHLYNDDLGVRDSFHYPYSGGDKPFEAHSLPPPRAPLLAGSL
PPSRFLDDLPPLALGPQADDEFTTAYGSLGSAWDDSRDVVYAASCPATLG
GELFGGSNGRGRAPARSRKASMLALEEEDNCTEAESESLDNSER
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mRNA from alignment at D-mesarthrocarpus_Contig9966:315..1591-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9966.2.1 ID=mRNA_D-mesarthrocarpus_Contig9966.2.1|Name=mRNA_D-mesarthrocarpus_Contig9966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1277bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9966:315..1591- (Discosporangium mesarthrocarpum MT17_79)
GATCGGGAGGGCGACAAGGGGGACTTGCATCTCTACAACGATGACCTTGG
GGTCAGGGATTCATTCCATTACCCATACTCGGGAGGTGATAAGCCCTTCG
AGGCTCACTCGCTGCCACCCCCGCGGGCGCCCCTGCTTGCCGGGTCGCTT
CCACCTTCGCGTTTCCTTGACGACTTGCCTCCGCTGGCTTTGGGACCCCA
GGTGTGGTCTGGGTCGAGTGCGCCTTGCTTGTTCATTTCGAGTTTTAAGT
TAATGATCTTTGGTTCGCGATCGGATGGTTCTTGTGTAATCGTGTCTGAC
GGGTGCCTGACGCGGGCTTCTCATGACTGTGTTCATCATGACCAGCCGGG
AACATCCTCGGGTAACTATGCCCATTCTGTGTCTGGGGAACAAATGACCG
GAGGACCACTCTTTACTCCTTTCTCGCCCGCGGACTTGTACCTCGCTCCT
CAGGCTGACGACGAATTCACAACAGCGTATGGTTCCCTCGGATCAGCCTG
GGACGACAGCCGCGATGTGGTGGTGAGTGCATCAGCATAGCTATTGGAAC
GTCCTCCACACCTTCCATGAGGGAACAGTGTGGCTCTAATGCAGTGCCCG
TAGTGAGGTTAAGGGTTAAGGGTTAAGGTTAAGGTTCTGGAACCGTCACG
GAGTCTCTTCCTCCCTGCCGCGTGTGACCTCCCTTGCTCTCTTTCATGAT
CGATGATCGGTATTGATCGTGCGTCCCTTGCCTTCTTCTTCGCAGCCCCG
ATGGTAAAATATATGCCCCTCTTCTGTATCCAGGCCCCATGCACCCCTTG
CTTGGAAAATGATCACGGAAGGTAACAGAACCCGTCTGTAGTGTGGTACA
GCAAACACAGCATGCCCGTTTGTGAGTGTGTTCTTCCCTGTACCTTCCTC
TTCCCTGTACCTCCTTCGTGTACTGGGCCCATTCTCCCTCCTTGGACGCA
AATAACGCCTTCCAAGGCCGAAGGTCGGTGCTACGAGTACACGGCGGCAG
TAACAAAACAAGTTTCCAAACAAACGGGAAGACTGTCGCCGGTTTTGATT
CAACTGCTTTGAGTGAGCTGAGTCGTTACTAACTTTTTAAACCCTTCTGC
AAAAAAAAAAAAGTACGCGGCGTCCTGCCCGGCCACCTTGGGAGGCGAGC
TCTTCGGGGGCAGCAACGGCCGTGGTCGCGCCCCCGCCCGTTCCAGGAAG
GCATCTATGCTTGCCCTGGAAGAGGAGGACAACTGCACAGAGGCAGAGTC
GGAGTCGCTTGACAACAGCGAGCGAGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9966:315..1591-

>mRNA_D-mesarthrocarpus_Contig9966.2.1 ID=mRNA_D-mesarthrocarpus_Contig9966.2.1|Name=mRNA_D-mesarthrocarpus_Contig9966.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=432bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9966:315..1591- (Discosporangium mesarthrocarpum MT17_79)
GATCGGGAGGGCGACAAGGGGGACTTGCATCTCTACAACGATGACCTTGG
GGTCAGGGATTCATTCCATTACCCATACTCGGGAGGTGATAAGCCCTTCG
AGGCTCACTCGCTGCCACCCCCGCGGGCGCCCCTGCTTGCCGGGTCGCTT
CCACCTTCGCGTTTCCTTGACGACTTGCCTCCGCTGGCTTTGGGACCCCA
GGCTGACGACGAATTCACAACAGCGTATGGTTCCCTCGGATCAGCCTGGG
ACGACAGCCGCGATGTGGTGTACGCGGCGTCCTGCCCGGCCACCTTGGGA
GGCGAGCTCTTCGGGGGCAGCAACGGCCGTGGTCGCGCCCCCGCCCGTTC
CAGGAAGGCATCTATGCTTGCCCTGGAAGAGGAGGACAACTGCACAGAGG
CAGAGTCGGAGTCGCTTGACAACAGCGAGCGA
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