mRNA_D-mesarthrocarpus_Contig10193.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10193.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10193.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10193.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10193contigD-mesarthrocarpus_Contig10193:3692..4201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size510
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.6726515-CDS-D-mesarthrocarpus_Contig10193:3691..42011680789162.6726515-CDS-D-mesarthrocarpus_Contig10193:3691..4201Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10193 3692..4201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10193.1.1prot_D-mesarthrocarpus_Contig10193.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10193 3692..4201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10193.1.1

>prot_D-mesarthrocarpus_Contig10193.1.1 ID=prot_D-mesarthrocarpus_Contig10193.1.1|Name=mRNA_D-mesarthrocarpus_Contig10193.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=170bp
GERWPTWDSAPMVAILTIDSHALPYVPPYLQAARHHVFFVQQEPKLSSMT
DDGSLVHRTYNDGVDLLPLEPPPGLDSNPLGLAFERVVDFPSVESVEAQF
GRKSECSTLYRTMFESEPAEFVCHDGIKLGGYPLLIRATAFLIPLDSPYE
VQIDSTDSFMWADTGIAYLG
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10193:3692..4201-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10193.1.1 ID=mRNA_D-mesarthrocarpus_Contig10193.1.1|Name=mRNA_D-mesarthrocarpus_Contig10193.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10193:3692..4201- (Discosporangium mesarthrocarpum MT17_79)
GGCGAGCGTTGGCCCACGTGGGACTCAGCGCCAATGGTTGCAATTCTTAC
AATCGACTCGCACGCGCTTCCGTACGTGCCGCCCTACCTTCAAGCTGCGA
GACATCATGTCTTCTTTGTTCAGCAGGAGCCCAAGTTATCCAGCATGACG
GATGACGGCTCCCTCGTCCACCGCACCTACAACGACGGGGTCGACCTGCT
GCCACTTGAGCCACCTCCAGGCTTGGACAGCAACCCACTGGGCCTCGCCT
TCGAGCGAGTTGTCGACTTCCCGTCCGTTGAATCAGTGGAAGCCCAGTTC
GGACGTAAATCCGAGTGTTCGACTCTCTATCGCACAATGTTCGAGAGTGA
GCCTGCCGAGTTTGTCTGTCATGACGGCATCAAGCTAGGCGGCTACCCAC
TTCTCATTCGAGCGACGGCCTTCCTCATTCCGCTCGATTCACCATACGAA
GTCCAGATTGATAGCACCGACTCTTTCATGTGGGCTGACACTGGGATTGC
CTACCTCGGC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10193:3692..4201-

>mRNA_D-mesarthrocarpus_Contig10193.1.1 ID=mRNA_D-mesarthrocarpus_Contig10193.1.1|Name=mRNA_D-mesarthrocarpus_Contig10193.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=510bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10193:3692..4201- (Discosporangium mesarthrocarpum MT17_79)
GGCGAGCGTTGGCCCACGTGGGACTCAGCGCCAATGGTTGCAATTCTTAC
AATCGACTCGCACGCGCTTCCGTACGTGCCGCCCTACCTTCAAGCTGCGA
GACATCATGTCTTCTTTGTTCAGCAGGAGCCCAAGTTATCCAGCATGACG
GATGACGGCTCCCTCGTCCACCGCACCTACAACGACGGGGTCGACCTGCT
GCCACTTGAGCCACCTCCAGGCTTGGACAGCAACCCACTGGGCCTCGCCT
TCGAGCGAGTTGTCGACTTCCCGTCCGTTGAATCAGTGGAAGCCCAGTTC
GGACGTAAATCCGAGTGTTCGACTCTCTATCGCACAATGTTCGAGAGTGA
GCCTGCCGAGTTTGTCTGTCATGACGGCATCAAGCTAGGCGGCTACCCAC
TTCTCATTCGAGCGACGGCCTTCCTCATTCCGCTCGATTCACCATACGAA
GTCCAGATTGATAGCACCGACTCTTTCATGTGGGCTGACACTGGGATTGC
CTACCTCGGC
back to top