mRNA_D-mesarthrocarpus_Contig9940.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9940.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9940.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.610e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   19 DLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYPAGIPAKQWGRLQDRTVRWLMR 213
            DLEE+S MSH++         VESARS SWSGS++GG G VDYPAGIP KQWGR+QDRTVRWL+R
Sbjct:  254 DLEESSAMSHVT---------VESARSGSWSGSIVGGFGFVDYPAGIPPKQWGRIQDRTVRWLIR 309
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BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.620e-18
Identity = 44/65 (67.69%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:   19 DLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYPAGIPAKQWGRLQDRTVRWLMR 213
            DLEE+S MSH++         VESARS SWSGS++GG G VDYPAGIP KQWGR+QDRTVRWL+R
Sbjct:  277 DLEESSAMSHVT---------VESARSGSWSGSIVGGFGFVDYPAGIPPKQWGRIQDRTVRWLIR 332
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9940.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV84_9PHAE2.610e-1867.69VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJN4_ECTSI2.620e-1867.69VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9940contigD-mesarthrocarpus_Contig9940:1892..4544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FJN4
Preferred nameMIB1
PFAMsAnk,Ank_2,Ank_4,Ank_5,MIB_HERC2,VPS9,ZZ,zf-C3HC4_3
Model size639
Max annot lvl2759|Eukaryota
KEGG koko:K10645
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.29e-19
EggNOG OGsCOG0666@1|root,KOG2319@2759|Eukaryota,KOG4177@2759|Eukaryota
EC2.3.2.27
Descriptionspectrin binding
Cds size639
COG categoryI
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791144.0030448-CDS-D-mesarthrocarpus_Contig9940:1891..20651680791144.0030448-CDS-D-mesarthrocarpus_Contig9940:1891..2065Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9940 1892..2065 +
1680791144.026574-CDS-D-mesarthrocarpus_Contig9940:2787..31901680791144.026574-CDS-D-mesarthrocarpus_Contig9940:2787..3190Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9940 2788..3190 +
1680791144.0381382-CDS-D-mesarthrocarpus_Contig9940:4482..45441680791144.0381382-CDS-D-mesarthrocarpus_Contig9940:4482..4544Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9940 4483..4544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9940.1.1prot_D-mesarthrocarpus_Contig9940.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9940 1892..4544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9940.1.1

>prot_D-mesarthrocarpus_Contig9940.1.1 ID=prot_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=213bp
AGTGGIDLEETSTMSHISYASHVSHHSVESARSNSWSGSVMGGLGLVDYP
AGIPAKQWGRLQDRTVRWLMRGDTIQRNQGPRKGGSLGAGAFQGGPGGGP
EGSGGPSSSGGPGSVGGSSRGPLKPPALSSLALVTGPSDAQSATSAGSGS
TANGGRPFSSASSPPPTLVSPLYSPTTSGKGAATAGGGGREDDGVHAKWL
AQLEVVSSKNIED
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mRNA from alignment at D-mesarthrocarpus_Contig9940:1892..4544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9940.1.1 ID=mRNA_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2653bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9940:1892..4544+ (Discosporangium mesarthrocarpum MT17_79)
GCTGGCACCGGCGGGATCGACCTGGAGGAGACAAGCACCATGTCCCATAT
CTCGTACGCTTCCCACGTCTCCCACCACTCCGTCGAGTCCGCCAGATCCA
ACTCCTGGTCCGGTTCTGTGATGGGAGGGCTGGGTTTAGTGGACTACCCG
GCAGGGATCCCTGCTAAACAATGGGTAAAGGACAAGAGACCCTTCTCTCT
TTACTTCCCTACTGCAGAGTCAGGCGCAGTCGAAAATGCGGGTTCAAGAG
GGCACTGGCCTTGTTTTTTTGTTTGTACCGTAGGATGCACTACCTGTTTT
TTCTTTTTTCTTTTCGCACGGAAGAGGAAAGGTGGCACCTCTTCACCGGC
AAAAAAAGAAGGAGAGGGGAGGGGAGGGGAGGGGGATCACAAGACCACCG
GTGTGGCCTGCATTAGATTATTCGCATCTTTATGGCACGTTTTGGTTCTC
TTTCTTTTTTGTACTGACACGGCATACTTGGGCAGCGCTTCAGAAGGGGG
GGATTTGCACTATCGAGGCCTACCGTCTATCTATCAAAGGCTCTCCAAGG
GGGAAAGGGGTGGGTGGGGGAGAGGGGGGTGGTGGGGGTTTAGCATGTCA
GCGCAGAGGGCGTATTTCGAAGGATGAAGCTCCGTTTTTTTTTTTTTTAC
AGTTGAAATCTCCGTGTTGGTTTTTCTTTTCTCTTTCAAGGCTGTCAAAG
CACGACCGGAGTGGTAGAGCTCATCCTAGAGAAAATACCCCTGACCCTCC
AACCTGTGGCAGTTAAAAACCCCTGACCTCGGACCCCTGCCACCCCAGCC
CATTAGCCTTCATGAAGCACCTCAGTAACCATACCCTAGGGAAACCCTAG
CCTTTGCCCAAACCCTAACAACCCTCACCCTAACCCTAACCTCCAGGGTC
GACTCCAAGACCGAACAGTCCGGTGGCTGATGCGCGGCGATACCATCCAA
AGAAACCAGGGCCCCAGGAAGGGGGGCTCCCTGGGAGCTGGGGCCTTCCA
GGGTGGCCCTGGTGGCGGCCCTGAGGGCAGTGGAGGCCCAAGTAGCAGTG
GGGGCCCTGGTAGTGTTGGTGGCAGCAGCCGGGGGCCCTTGAAGCCACCA
GCGCTGTCCTCATTGGCTCTGGTGACAGGTCCCTCTGACGCCCAGAGCGC
CACCAGCGCGGGAAGCGGGAGCACAGCCAACGGGGGACGGCCCTTCTCCT
CTGCGAGCTCGCCCCCGCCCACCCTGGTCTCACCTCTGTACAGCCCCACC
ACCTCAGGGAAAGGGGCTGCCACTGCTGGGGGGGGGGGTCGGGAGGACGG
TGAGCATGAGATGTCAGGGCAGAAACATATGTATGTAGTTCTTGAAACCC
CTTTCCCGCTTAAGCCTTCGAAATGAAAGGCTTGTTCCACGTGGAGCACA
CGATGGTTGTGCTGCTGGACAACATCCCCTCCGGCGTACATGGAGGTTTT
TTTCATGTACACTGGGGAGGAAGTACACTGTCTGCAGGGTAGCTATTGTG
CGCTCCAGGTGGGATGTAGTTGCCATGGCTCGTGGAGAAGGTGACTAGAC
CTTGGAGAGGCGATTTGGGGATTGCCTAGTCCTTTCCTGTTGACCTGACT
GATGAAGGAGTAGGCTGTGCTAAAGAACTTGGTCGCAAGACAAAGGTACA
GGGCGCCTGATCTGTGACCCTCTTCTGGTTAAGTCATGGCTTTCCGCCAC
TTGGGGTAATACATCAGAGATCGCAAGCTTGCTGTACATTCTTGGTGACT
TGCTTTTTTGGTGCCCAAGAGTGTCGATCATAGGCACCCTCTGTAGAAGC
ATCAGTTCCAATGTTGGAAAATGCATTTACCTGACATGCAAGAATGCTTC
CTGGTCGCTCGTGAGGGGGGTTAGGGTTAGGGTTAGACCCAGTTCGAACA
AAGCTCATATTTGTTCAAACAGGGCTAACCAACTAATACCGTTTCTTCTT
ATTCTCTTTTTTTTCTTTCTTACGAATCACGTCTGGCACCGTGTCCTAAA
AAAAAAAATTGTGGCACCAAGAGCGATACAAAAAAAAAAGCAGAAACCAG
AACAGATTGATTTTCGCGCTTGATTTTCCGGGTAAATAACTGAGCAATCC
ACGCCCTTGTGTTTTTCGACCCTGTCTTTGTTTTTCATTGAGTGTGGCCT
TTAGAACTTGCTAGAGGGCGAGGTCTTTAGAACGCGGTGTGCGATGGAAT
GGAATGCATGCGCTTGCTTTATGTTTGCTCCTCTTCTGCTCTCGTTTCTT
TTTTTTTGCGCTTGCTCATGTCGAGTGAACACGCCTGACCCCACCCATAC
GTGGCAAGGAAACCCTATGCTGTGTTCGTTGCCTTAGCCTCGTTGCCTTA
GCCTCATCTGCCTTGCCTCACCCTTGCCGGTAAATAGCTATCCCTTTTTC
ATACCAGGGCATGAAGCATTTTGTTCCTCTTCATCGGTGGTTGCACTGGA
GGGGGAGCAAGGAAAAAGTGCTCAGCCTCTCCCCTCCTTGTTGACTGTGG
TGTTCTTTCATCCCCCACCCCCACAAACCCTAACTCTAACCCTAACCCTA
CCCCCCTCCCTTTGTTTTTTTTTGTGGCTCCTACAATATAGATGGTGTGC
ATGCCAAATGGCTGGCCCAGCTGGAGGTGGTATCCTCGAAGAACATTGAG
GAT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9940:1892..4544+

>mRNA_D-mesarthrocarpus_Contig9940.1.1 ID=mRNA_D-mesarthrocarpus_Contig9940.1.1|Name=mRNA_D-mesarthrocarpus_Contig9940.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=639bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9940:1892..4544+ (Discosporangium mesarthrocarpum MT17_79)
GCTGGCACCGGCGGGATCGACCTGGAGGAGACAAGCACCATGTCCCATAT
CTCGTACGCTTCCCACGTCTCCCACCACTCCGTCGAGTCCGCCAGATCCA
ACTCCTGGTCCGGTTCTGTGATGGGAGGGCTGGGTTTAGTGGACTACCCG
GCAGGGATCCCTGCTAAACAATGGGGTCGACTCCAAGACCGAACAGTCCG
GTGGCTGATGCGCGGCGATACCATCCAAAGAAACCAGGGCCCCAGGAAGG
GGGGCTCCCTGGGAGCTGGGGCCTTCCAGGGTGGCCCTGGTGGCGGCCCT
GAGGGCAGTGGAGGCCCAAGTAGCAGTGGGGGCCCTGGTAGTGTTGGTGG
CAGCAGCCGGGGGCCCTTGAAGCCACCAGCGCTGTCCTCATTGGCTCTGG
TGACAGGTCCCTCTGACGCCCAGAGCGCCACCAGCGCGGGAAGCGGGAGC
ACAGCCAACGGGGGACGGCCCTTCTCCTCTGCGAGCTCGCCCCCGCCCAC
CCTGGTCTCACCTCTGTACAGCCCCACCACCTCAGGGAAAGGGGCTGCCA
CTGCTGGGGGGGGGGGTCGGGAGGACGATGGTGTGCATGCCAAATGGCTG
GCCCAGCTGGAGGTGGTATCCTCGAAGAACATTGAGGAT
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