prot_D-mesarthrocarpus_Contig993.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig993.1.1
Unique Nameprot_D-mesarthrocarpus_Contig993.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length266
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig993.1.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.050e-32
Identity = 91/251 (36.25%), Postives = 119/251 (47.41%), Query Frame = 0
Query:   10 LGLLAGAFGDGSMRVYACPSPEKVAASAHGRGIPFGGVFPRGGEDTSGGRAGVSGIGGGGDAP------------VVNMEPVFRSTVEGIGFTCVDWSRHSKDLLLAGASDGSVCMWCVRAYAPSPPGWGRGMSDLIRQGVDSEGRDKSHPPLKRFMATC-GVYDYVPATAMVRSVAWCPDSPRLFASTGGGFLFNVWDSSEQQMPLSISAGKETMNFSHGMAVRWAPGRCGIWIANSSFPFTNYMDLRSG 247
            LGL       GS+ VY CP P+ V A A           P  G   SGG AG     G   A             V+  +P+ ++ ++     C+DWS    DLLLAGASDG+VC+W V A      G               EG   +HPP ++F  +  G+ D V   A+V  VAWCP SP LFA+TG G +  VWD+S+   PL  S   +T   S G  VRW PG  GIW++ S+ PF  ++D   G
Sbjct: 1130 LGLPPAGVSGGSLPVYVCPDPDGVTAEA---ASSLSNTAP--GSGASGGTAGAFAPPGSTPAAXXXXXXXXHGAVVLKTKPILQARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKVSALGGEHGG---------------EGTTGNHPPFRQFSCSAIGMCDVV--QAVVNDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPL-CSIPVKTQRCS-GTTVRWGPGGSGIWVSASTRPFIFFLDFFEG 1356          
BLAST of mRNA_D-mesarthrocarpus_Contig993.1.1 vs. uniprot
Match: A0A3M6VKC8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKC8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 2.930e-9
Identity = 69/254 (27.17%), Postives = 105/254 (41.34%), Query Frame = 0
Query:    7 EDTLGLLAGAFGDGSMRVYACPSPEKVAASAHGRGIPFGGVFPRGGEDTSGGRAGVSGIGGGGDAPVVNMEPVFRSTVEGIGFTCVDWSRHSKDLLLAGASDGSVCMWCVRAYAPSPPGWGRGMSDLIRQGVDSEGRDKSHPPLKRFMA--TCG---VYDYVPATAMVRSVAWCPDSPRLFASTGGGFLFNVWDSSEQQMPLSISAGKETMNFSHGMAVRWAPGRCGIWIANSSFPFTNYMDLRSGLAKKPFFN 255
            ED LG+LA  FGDGS++VY  P+  +              + P+  ++T              D  V     +    +  I    V WS H+ ++LL GASDGSV +W +           R +     Q    E       P +RF    T G    +D+      +R+VAW P    +FA+TG   +F VWD  E ++ L     + T     G+A++W   +  I I+        Y D+ SG  +K  F+
Sbjct:  297 EDCLGILAVCFGDGSLKVYEIPAILEER------------LQPKLVKET--------------DYVVEKDILIVVGKLPRIMQLSVQWSPHNWNMLLTGASDGSVSLWNIETAVKES----RSLKIRHAQPAPIE-------PQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHIFATTGNDSVFKVWDVREPRVCLRSHRIRSTW----GLALQWMD-QTSIQISGDQGSIFMY-DILSGSYQKLHFH 507          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig993.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDG0_ECTSI2.050e-3236.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3M6VKC8_9STRA2.930e-927.17Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 77..115
e-value: 0.63
score: 18.3
coord: 155..195
e-value: 0.4
score: 19.5
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 7..236
e-value: 2.3E-13
score: 51.9
NoneNo IPR availablePANTHERPTHR15052RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITcoord: 5..203
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig993contigD-mesarthrocarpus_Contig993:1256..4526 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig993.1.1mRNA_D-mesarthrocarpus_Contig993.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig993 1256..4528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig993.1.1 ID=prot_D-mesarthrocarpus_Contig993.1.1|Name=mRNA_D-mesarthrocarpus_Contig993.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=266bp
VSKRAGEDTLGLLAGAFGDGSMRVYACPSPEKVAASAHGRGIPFGGVFPR
GGEDTSGGRAGVSGIGGGGDAPVVNMEPVFRSTVEGIGFTCVDWSRHSKD
LLLAGASDGSVCMWCVRAYAPSPPGWGRGMSDLIRQGVDSEGRDKSHPPL
KRFMATCGVYDYVPATAMVRSVAWCPDSPRLFASTGGGFLFNVWDSSEQQ
MPLSISAGKETMNFSHGMAVRWAPGRCGIWIANSSFPFTNYMDLRSGLAK
KPFFNSSSVRVMKSRA
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf