mRNA_D-mesarthrocarpus_Contig9881.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9881.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig9881.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: D7G3H0_ECTSI (Globin, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3H0_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 4.480e-23
Identity = 54/104 (51.92%), Postives = 79/104 (75.96%), Query Frame = 1 
Query:  472 RARDHDHAIGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIAHSVHLRRHSFVEGHITCKELSAAPGAVYRGK 783
            R+   DH IG GA  QGRL+F GLLRV+GRFEGVLK A  A+++V RSG++ GD+E  ++V V+GT++G++ A  V LRR++ V+G++ CK+L+AA  AV+R +
Sbjct:   31 RSNKPDHVIGPGAMLQGRLQFKGLLRVEGRFEGVLKAAEGANMMVARSGVIAGDVEGCHSVIVEGTIIGNVSASVVVLRRYANVQGNVWCKDLAAAATAVFRNR 134
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A6H5KC50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC50_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.290e-15
Identity = 39/71 (54.93%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:  517 QGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIAHSVHLRRHSFVEG 729
            +GRL+F GLLRV+GRFEGVLKP   A+++V RSG++ GD+E  ++V V+GTV+G++ A  V LRR++ V+G
Sbjct:   10 KGRLQFKGLLRVEGRFEGVLKPVEGANMMVARSGVIAGDVEGCHSVIVEGTVIGNVSASVVVLRRYANVQG 80
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A1T4WSA6_9DELT (Protein CcmA, bactofilin family n=2 Tax=Paradesulfovibrio TaxID=2910986 RepID=A0A1T4WSA6_9DELT)

HSP 1 Score: 60.5 bits (145), Expect = 1.630e-7
Identity = 35/109 (32.11%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:  463 GKSRARDHDHA-IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIAHS-VHLRRHSFVEGHITCKELSAAPGAVYRGK 783
            G+  ARD  +A +GAG +++GRLEF G +R+DG F+G ++  G  ++++ +  +V G +     + V G V G++ A     L + +++EG ++  +L    GAV  G+
Sbjct:   18 GEEMARDEINAFLGAGTSYEGRLEFKGSVRIDGAFKGEIESEG--TLVIGKEALVEGTISV-GQLIVSGRVTGTVTASGKTTLHKTAYLEGQLSSPKLVMEEGAVLEGQ 123
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN)

HSP 1 Score: 63.2 bits (152), Expect = 4.140e-7
Identity = 37/95 (38.95%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:  496 IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIAHSVHLRRHSFVEGHITCKELSAAPGAVYRG 780
            IG   + +G+L F  LLR+DG+FEG L   G+  +IV   G ++GD++T +++ V G V+G+I    V L   + + G ITCK L   P  V  G
Sbjct:  363 IGETLSIEGKLRFERLLRLDGKFEGELISEGD--LIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVG 455
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A1F9KW71_9DELT (Uncharacterized protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9KW71_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 1.090e-6
Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:  457 LFGKSRARDHDHAIGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIA-HSVHLRRHSFVEGHITCKELSAAPGAVYRGKTVGIDNSCLVKEPLVTPLTANPSSGDE 864
            L G     D    +G  +TF+G+L F+G +R+DGRF+G +      +I+V   G  +       ++ ++G + G I A HSV +     V G+IT  +L    G ++ G +   D S  V  P VT L+ +   GD+
Sbjct:   11 LAGDLNINDVHTILGPESTFEGKLSFDGTVRIDGRFKGEIH---TDNILVIGQGARVDAQILVGSIVINGEIHGDITAKHSVEIHAPGKVRGNITTPQLMIDKGVLFDGSSKMEDASTKVPGPNVTLLSKH-EDGDK 143
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A4R9LPF8_9LEPT (Polymer-forming cytoskeletal protein n=2 Tax=Leptospira TaxID=171 RepID=A0A4R9LPF8_9LEPT)

HSP 1 Score: 57.0 bits (136), Expect = 1.390e-6
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  496 IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIA-HSVHLRRHSFVEGHITCKELSAAPGAVYRGK 783
            IG GA F G  +F+GL+R+DGRF GVL+  G   +++ ++G+V  D+     V   G + G+I A   V L     +EG +    L    G V+ GK
Sbjct:   16 IGEGAEFNGEFKFSGLIRIDGRFRGVLETDGK--VLIGKTGIVDTDIRA-KVVVAGGEIRGNIFATERVTLLSSCRLEGDVVTPRLIVEEGVVFHGK 109
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A3M1HF65_9PROT (Polymer-forming cytoskeletal protein n=1 Tax=Zetaproteobacteria bacterium TaxID=2026807 RepID=A0A3M1HF65_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 1.890e-6
Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:  487 DHAIGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSI-IAHSVHLRRHSFVEGHITCKELSAAPGAVYRGKTVGI 795
            D  IG  A F+G L F+G+LR+DGRFEG +    +A++IV+ +  + G++    N+ + GT+ G++  A+SV +     + G +  + L+   GA   G+   I
Sbjct:   20 DTLIGPKAEFKGELAFSGVLRIDGRFEGTITAHEDATLIVSETAKIKGEVHV-PNLRLHGTIEGNVRAANSVLVGAKGVLIGDLEYRTLAIEEGASINGRCTRI 122
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A7Y6UIP9_9DELT (Polymer-forming cytoskeletal protein n=1 Tax=Kofleriaceae bacterium TaxID=2212474 RepID=A0A7Y6UIP9_9DELT)

HSP 1 Score: 57.0 bits (136), Expect = 2.470e-6
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1 
Query:  496 IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIA-HSVHLRRHSFVEGHITCKELSAAPGAVYRGKT 786
            +G GATF+G+L F G +R+DGRF+G +      ++++    +V   LE    V V GTV+G+I+A  S+ +     V+G +    L    G ++ G++
Sbjct:   18 LGRGATFEGKLTFEGTVRIDGRFKGEVFTED--TLVIGEGAVVEAQLEV-GEVIVQGTVVGNIVAKRSIEIHAPGRVKGDLHTPSLQIDKGVIFEGRS 112
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: A0A2M9Y5S3_9LEPT (Cell division protein n=26 Tax=Leptospira TaxID=171 RepID=A0A2M9Y5S3_9LEPT)

HSP 1 Score: 56.2 bits (134), Expect = 2.720e-6
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:  496 IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIA-HSVHLRRHSFVEGHITCKELSAAPGAVYRGK 783
            IG GA F G  +F GL+R+DG+F GVL+  G   +++ +SG+V  D++    V   G + G+I A   V L     +EG I    L    G V+ GK
Sbjct:   16 IGEGAEFVGEFKFPGLIRIDGKFRGVLETTGK--VLIGKSGIVDTDIKA-RVVVAGGEIRGNIYATERVTLLSSCRLEGDIVTPRLIVEEGVVFHGK 109
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BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Match: B2KBQ5_ELUMP (Integral membrane protein CcmA involved in cell shape determination n=1 Tax=Elusimicrobium minutum (strain Pei191) TaxID=445932 RepID=B2KBQ5_ELUMP)

HSP 1 Score: 56.2 bits (134), Expect = 3.050e-6
Identity = 35/103 (33.98%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:  481 DHDHAIGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETFNNVTVDGTVLGSIIAHSVHLRRHSFVEGHITCKELSAAPGAVYRGKTV 789
            +H   I A   FQG L   G LRVDGR  G +  A +  I++   G V GDL     + V G+V G+I A ++ +   + ++G I  ++++   GAV  G  V
Sbjct:   14 EHVSVISADCYFQGTLNVQGSLRVDGRLSGCVDNARH--IVIGVDGAVEGDLSA-QTIVVSGSVTGNICADALEVSATAKIKGDIRAEKIAVEEGAVLNGMVV 113
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9881.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G3H0_ECTSI4.480e-2351.92Globin, putative n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5KC50_9PHAE1.290e-1554.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1T4WSA6_9DELT1.630e-732.11Protein CcmA, bactofilin family n=2 Tax=Paradesulf... [more]
F0Y5F7_AURAN4.140e-738.95Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1F9KW71_9DELT1.090e-630.66Uncharacterized protein n=2 Tax=unclassified Delta... [more]
A0A4R9LPF8_9LEPT1.390e-636.08Polymer-forming cytoskeletal protein n=2 Tax=Lepto... [more]
A0A3M1HF65_9PROT1.890e-632.69Polymer-forming cytoskeletal protein n=1 Tax=Zetap... [more]
A0A7Y6UIP9_9DELT2.470e-632.65Polymer-forming cytoskeletal protein n=1 Tax=Kofle... [more]
A0A2M9Y5S3_9LEPT2.720e-637.11Cell division protein n=26 Tax=Leptospira TaxID=17... [more]
B2KBQ5_ELUMP3.050e-633.98Integral membrane protein CcmA involved in cell sh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9881contigD-mesarthrocarpus_Contig9881:2798..4572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3H0
PFAMsDEP,PAS_9,RGS
Model size1162
Max annot lvl2759|Eukaryota
KEGG koko:K02157,ko:K19838,ko:K21440
KEGG Pathwayko04011,ko04310,ko04390,ko04550,ko04934,ko05165,ko05200,ko05210,ko05213,ko05217,ko05224,ko05225,ko05226,map04011,map04310,map04390,map04550,map04934,map05165,map05200,map05210,map05213,map05217,map05224,map05225,map05226
Hectar predicted targeting categoryother localisation
Exons3
Evalue6e-25
EggNOG OGsKOG3589@1|root,KOG3589@2759|Eukaryota
Descriptionpositive regulation of GTPase activity
Cds size816
COG categoryS
BRITEko00000,ko00001,ko01009,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.937727-UTR-D-mesarthrocarpus_Contig9881:2797..31421680791138.937727-UTR-D-mesarthrocarpus_Contig9881:2797..3142Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9881 2798..3142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791138.9531412-CDS-D-mesarthrocarpus_Contig9881:3142..33161680791138.9531412-CDS-D-mesarthrocarpus_Contig9881:3142..3316Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9881 3143..3316 +
1680791138.9675128-CDS-D-mesarthrocarpus_Contig9881:3462..36711680791138.9675128-CDS-D-mesarthrocarpus_Contig9881:3462..3671Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9881 3463..3671 +
1680791138.9796782-CDS-D-mesarthrocarpus_Contig9881:4139..45721680791138.9796782-CDS-D-mesarthrocarpus_Contig9881:4139..4572Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9881 4140..4572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9881.2.1prot_D-mesarthrocarpus_Contig9881.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9881 3143..4572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9881.2.1

>prot_D-mesarthrocarpus_Contig9881.2.1 ID=prot_D-mesarthrocarpus_Contig9881.2.1|Name=mRNA_D-mesarthrocarpus_Contig9881.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=272bp
MAVPTPSQVERSWTESPPGLSPSMSPVKKSTLTKSRGLFGKSRARDHDHA
IGAGATFQGRLEFNGLLRVDGRFEGVLKPAGNASIIVTRSGMVMGDLETF
NNVTVDGTVLGSIIAHSVHLRRHSFVEGHITCKELSAAPGAVYRGKTVGI
DNSCLVKEPLVTPLTANPSSGDEAFAFPMGALPDVAGLAISSAASSAAVS
AISIVIGAAAVKPKLDTPPPPGSARANANTSANTSANPSVGNGEGKGGMI
PPLRPAGSFAGSASYVRHKAEA
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mRNA from alignment at D-mesarthrocarpus_Contig9881:2798..4572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9881.2.1 ID=mRNA_D-mesarthrocarpus_Contig9881.2.1|Name=mRNA_D-mesarthrocarpus_Contig9881.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1775bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9881:2798..4572+ (Discosporangium mesarthrocarpum MT17_79)
GTAAGCCCGTGTGAGATGTTGGTTGGCAAAAATCTCTTTGGAAACGAAGC
AGCTTAGGAGATACATCCCACACAGTAGAGAGTAGTAGAGTGACCCCAAT
AAAATCCCGACCTGTCAAAACGACCCGAGAGGACAGGAAGTTGCGATCCT
CAATTGAACGTCAAAGTTCAGGGCAACTTTTTGATTCTCGAGTGGGCACA
CCACCCACAGCCTTGTGTTTTTCCCGCGTGTTGGGGACATTTCATGTTCC
GCGTCTGGGGTCTGTGTTCCTTATCCTTGCCCCATTGAGGACTTGTCTTG
GGGCAGCACAGTCACAGCTTAAGCCCTCTCATAGGGGAAAGCGTCATGGC
GGTTCCGACTCCAAGTCAAGTGGAAAGATCGTGGACAGAGTCGCCTCCAG
GACTCTCACCCAGTATGTCCCCCGTGAAGAAGAGTACCTTGACTAAGTCT
CGAGGACTATTTGGGAAGAGCCGTGCGAGAGATCACGACCACGCCATCGG
AGCGGGTGCAACTTTCCAGGTGGGTGCTGTATTTCTGTAGCGGGCCGGGT
CAAGCGCATGGTGACTATCTTCGATGAATCCACCCGAGTAAGCTGCACGC
CGTTGCTTTGCCCAGCTCAAACAACGCGCACCCTGTTTGCCAACTTAAAC
GTCTCGTTCTGGTAGGGGAGGCTCGAATTCAATGGCCTCCTCCGCGTGGA
CGGGAGGTTCGAGGGGGTGCTCAAGCCCGCAGGTAACGCGAGCATCATCG
TGACGAGGTCTGGGATGGTAATGGGAGACTTGGAAACCTTCAACAATGTA
ACCGTGGACGGCACGGTCTTGGGGAGCATCATTGCGCACTCCGTTCATCT
CCGGCGCCATTCGTTCGTTGAAGGGTGAGTGTGGGGCCTCATTTTTCCGG
GTTTGGATGGTATGGTTGTGGTTACATGTCGTTGAACATTGGGGTACTGC
GATGACCACCCGCACTTCTACGTGCAATCCATCTTCGAGTGCAATGCCCC
CAGCGTGGAAAGGGTCTTCGTGAGCTGTGTGCCTACTCCTGAGATGCGGC
TGTATGCAGTCATGACCCAAAGGCTTTGGTGAAGAGGTGAACCTCCACAT
ACGAAGTTGAGGATAAGGTCGTGCGGCACCCTGGCCGCATTCATTTGGGG
GCCAGCTTCAAAGACCGACCACCTGGCGCATCCCTTGCCAGTGAAATCAA
GTCTCATGGAACCACTACATTCTATCTTGTGCCGATGGGAAGTTTTATCG
CTAATCTTGTGCAAATTCTCCTGCGAGCATGATTCTCCTCCCCCCTCAAC
TTGAATCCTAAACCCCCCAAGACCCTGACCCCCCCGACACAGGCACATCA
CGTGTAAGGAGCTGAGCGCGGCCCCCGGCGCGGTGTACCGTGGCAAGACC
GTCGGGATCGACAATTCCTGCCTTGTTAAAGAACCCCTTGTCACGCCCCT
AACTGCCAACCCCAGCAGTGGGGATGAAGCCTTCGCTTTCCCGATGGGCG
CGTTACCAGATGTGGCGGGACTCGCTATCTCCTCCGCGGCGTCCTCGGCA
GCGGTCTCGGCCATCAGCATTGTCATAGGCGCAGCGGCAGTTAAGCCCAA
ACTGGACACCCCACCTCCGCCGGGGTCTGCGAGGGCCAATGCCAACACCA
GTGCCAACACCAGTGCCAACCCTTCCGTTGGCAATGGGGAAGGGAAGGGT
GGGATGATACCGCCCCTCCGGCCCGCGGGGTCGTTTGCCGGTAGCGCCTC
TTACGTCCGTCACAAGGCAGAGGCG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9881:2798..4572+

>mRNA_D-mesarthrocarpus_Contig9881.2.1 ID=mRNA_D-mesarthrocarpus_Contig9881.2.1|Name=mRNA_D-mesarthrocarpus_Contig9881.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=816bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9881:2798..4572+ (Discosporangium mesarthrocarpum MT17_79)
ATGGCGGTTCCGACTCCAAGTCAAGTGGAAAGATCGTGGACAGAGTCGCC
TCCAGGACTCTCACCCAGTATGTCCCCCGTGAAGAAGAGTACCTTGACTA
AGTCTCGAGGACTATTTGGGAAGAGCCGTGCGAGAGATCACGACCACGCC
ATCGGAGCGGGTGCAACTTTCCAGGGGAGGCTCGAATTCAATGGCCTCCT
CCGCGTGGACGGGAGGTTCGAGGGGGTGCTCAAGCCCGCAGGTAACGCGA
GCATCATCGTGACGAGGTCTGGGATGGTAATGGGAGACTTGGAAACCTTC
AACAATGTAACCGTGGACGGCACGGTCTTGGGGAGCATCATTGCGCACTC
CGTTCATCTCCGGCGCCATTCGTTCGTTGAAGGGCACATCACGTGTAAGG
AGCTGAGCGCGGCCCCCGGCGCGGTGTACCGTGGCAAGACCGTCGGGATC
GACAATTCCTGCCTTGTTAAAGAACCCCTTGTCACGCCCCTAACTGCCAA
CCCCAGCAGTGGGGATGAAGCCTTCGCTTTCCCGATGGGCGCGTTACCAG
ATGTGGCGGGACTCGCTATCTCCTCCGCGGCGTCCTCGGCAGCGGTCTCG
GCCATCAGCATTGTCATAGGCGCAGCGGCAGTTAAGCCCAAACTGGACAC
CCCACCTCCGCCGGGGTCTGCGAGGGCCAATGCCAACACCAGTGCCAACA
CCAGTGCCAACCCTTCCGTTGGCAATGGGGAAGGGAAGGGTGGGATGATA
CCGCCCCTCCGGCCCGCGGGGTCGTTTGCCGGTAGCGCCTCTTACGTCCG
TCACAAGGCAGAGGCG
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