mRNA_D-mesarthrocarpus_Contig979.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig979.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig979.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: D7FYP5_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 2.330e-65
Identity = 105/138 (76.09%), Postives = 123/138 (89.13%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEG-AEIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQVLRV 411
            TGVTV+D AV+ FNAFKLHR P ++RYFIYK+E  AEI+VD+FG+K+KTYDDF A LPP+ECRYGVFDLDF +RDGR  NKLIFI+W+PDTA +K KM+YA SKEAIKSAL+GIG+HLQATDQGELELDYIKSQV +V
Sbjct:    3 TGVTVNDEAVEMFNAFKLHRAPHDNRYFIYKIENDAEIIVDTFGDKTKTYDDFTACLPPNECRYGVFDLDFTTRDGREANKLIFISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 140          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A836CHD0_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHD0_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.720e-51
Identity = 86/139 (61.87%), Postives = 108/139 (77.70%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVE--GAEIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQVLRV 411
            TG+ V+D  V QFN FKL + P N+RY++YK+   G EIV+D+FGE+  TYDDFC+ LPP ECRYG+FDLD+ ++DGR ++KL+FI WTPD A VK KM+YAGSKE+IK ALVG+GVHLQA D  ELEL  I S V R+
Sbjct:    3 TGIIVNDEVVTQFNLFKLKKEPCNYRYYVYKISDNGQEIVIDTFGERDATYDDFCSKLPPKECRYGLFDLDYDTKDGRSSSKLVFIAWTPDEAAVKNKMMYAGSKESIKGALVGVGVHLQACDASELELATILSSVQRI 141          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A836C9C2_9STRA (ADF-H domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9C2_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.500e-48
Identity = 87/140 (62.14%), Postives = 110/140 (78.57%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVE--GAEIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSR-DGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQVLRV 411
            TGV+V+D  V QFN FKL + P NHR++IYK+   GAEIV+D FG + KTYDDF A LPP+ECRYG+FDL++ ++ + RP  KLI I WTPDTA +K KM+YAGSK+A+KSALVG+G+HLQATD  ELEL YI + V R+
Sbjct:  221 TGVSVNDAVVTQFNNFKLKKEPDNHRFYIYKISDNGAEIVIDQFGTREKTYDDFVACLPPNECRYGLFDLEYTTKTESRPVEKLILIAWTPDTAKIKNKMMYAGSKDALKSALVGVGIHLQATDASELELQYIINSVSRI 360          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A067C057_SAPPC (ADF-H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C057_SAPPC)

HSP 1 Score: 164 bits (416), Expect = 2.010e-44
Identity = 81/137 (59.12%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEG-AEIVVDSFGEKSKTYDDFCAAL--PPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQV 402
            +GV VSD  V +FN FKL + P+N RYFIYK+EG +EIV++  GE+S+TYDDF A L    +ECRYG+ DLDF ++DGRPT+KL+FI+W+PDTA VK+KM+YA SKEAIK  LVG+G++L ATD  EL    I+  V
Sbjct:    3 SGVGVSDDVVTEFNDFKLQKAPYNFRYFIYKIEGDSEIVIEHRGERSETYDDFAAKLNATTNECRYGLIDLDFTTKDGRPTSKLVFISWSPDTARVKSKMLYASSKEAIKRGLVGVGIYLSATDASELSFSSIQDGV 139          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A6T5XBY3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XBY3_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.920e-42
Identity = 74/129 (57.36%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGA-EIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELD 384
            TGV   D   + F  FKL + PF  RYFIY ++   EIV++  GE+ KTYDDF   LP ++CRYG+ DL+F S DGRPT+KL+FITW PDTAP+++KM+Y+GSKEAIKSALVG+G+ + ATD  EL+L+
Sbjct:    3 TGVRCHDDVAEAFTKFKLQQEPFKLRYFIYVIKDKKEIVIEKQGEREKTYDDFVENLPENDCRYGLLDLEFESDDGRPTSKLVFITWNPDTAPIRSKMLYSGSKEAIKSALVGVGIQINATDASELDLE 131          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A1V9ZSG9_9STRA (Actin-depolymerizing factor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSG9_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.930e-42
Identity = 76/137 (55.47%), Postives = 103/137 (75.18%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGA-EIVVDSFGEKSKTYDDFCAALPP--DECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQV 402
            +GV V D  V +FN FKL R P+N RYFIYK+E + E+V++  GE+++TY+DF   L    DECRYG+ DLDF ++DGRPT+KL+FI+W+PDTA +K+KM+YA SKEAIK  LVG+G++L ATD  EL +  I+  V
Sbjct:    5 SGVGVHDDVVTEFNDFKLQRAPYNFRYFIYKIENSSEVVIEHRGERTETYEDFATKLKSIGDECRYGLIDLDFTTKDGRPTSKLVFISWSPDTAKIKSKMLYASSKEAIKRCLVGVGIYLSATDASELSMAAIEDGV 141          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: K0SV25_THAOC (ADF-H domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SV25_THAOC)

HSP 1 Score: 157 bits (397), Expect = 9.860e-42
Identity = 70/129 (54.26%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGA-EIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELD 384
            TGV VSD     FN FKL + P+  RYFIY+++   EIV+ S G++SKTY+DF   LP ++CRYG+ D++F + DGRPT+K++FI+W PDTA ++ KM+Y+GSKEA+KSALVG+G+H+ ATD  EL+ +
Sbjct:    3 TGVAVSDEVSTSFNKFKLGQEPYKLRYFIYEIKNKKEIVISSQGDRSKTYEDFVEELPENDCRYGLIDIEFETDDGRPTSKIVFISWNPDTASIRPKMLYSGSKEALKSALVGVGIHINATDHSELDFE 131          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A4D9D6Y0_9STRA (ADF-H domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6Y0_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.280e-41
Identity = 70/136 (51.47%), Postives = 98/136 (72.06%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGAEIVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQVLR 408
            TGV  +D     F+ FKL R P+N RY +Y+++  +I ++  G + K ++DFCA LP  +CRY V D++F + DGRPT+K+IF++W PDTA V++KM+YAGSKEAIK ALVG+G+HL ATD+ ELE + I   V R
Sbjct:    3 TGVEAADEVGSSFSQFKLQRAPYNVRYIVYEIKEDKIQIEKQGAREKNWEDFCADLPESDCRYAVIDVEFETDDGRPTSKIIFLSWAPDTAKVRSKMVYAGSKEAIKRALVGVGIHLNATDRSELEFEQILPSVKR 138          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A7S1D6V8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6V8_CYCTE)

HSP 1 Score: 157 bits (396), Expect = 1.370e-41
Identity = 74/129 (57.36%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGAE-IVVDSFGEKSKTYDDFCAALPPDECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELD 384
            TGV V D     FN FKL R  F  RYFIY +E  + IV++  GE+SKTYDDF A LP ++CRYG+ DL+F + DGRPT+K++FI+W PDTA V+ KM+Y+GSKEAIKS L G+G+H+ ATD  EL+L+
Sbjct:    3 TGVIVGDDVSFAFNEFKLQRGDFKLRYFIYSIENKKTIVIEKQGERSKTYDDFVADLPENDCRYGLIDLEFETDDGRPTSKIVFISWNPDTASVRPKMLYSGSKEAIKSVLTGVGIHINATDYSELDLE 131          
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Match: A0A1V9ZGW8_9STRA (Actin-depolymerizing factor n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGW8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.900e-41
Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 1
Query:    1 TGVTVSDVAVDQFNAFKLHRVPFNHRYFIYKVEGAEIVVDSFGEKSKTYDDFCAALPP--DECRYGVFDLDFHSRDGRPTNKLIFITWTPDTAPVKTKMIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQV 402
            +GV V D  + +FN FKL R P+N RYFIYK+E  EIV++  GE+S++Y+DF   L     ECRYG+ DLDF ++DGRPT+KL+FI+W+PDT+ +K+KM+YA SKEAIK  LVG+G++L ATD  EL    I+  V
Sbjct:    3 SGVGVHDDVISEFNDFKLQRAPYNFRYFIYKIEHDEIVIEHRGERSESYEDFANKLLEIQSECRYGLIDLDFTTKDGRPTSKLVFISWSPDTSKIKSKMVYASSKEAIKRCLVGVGIYLSATDASELAFSAIEDGV 138          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig979.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYP5_ECTSI2.330e-6576.09ADF-H domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A836CHD0_9STRA1.720e-5161.87ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836C9C2_9STRA1.500e-4862.14ADF-H domain-containing protein n=1 Tax=Tribonema ... [more]
A0A067C057_SAPPC2.010e-4459.12ADF-H domain-containing protein n=2 Tax=Saprolegni... [more]
A0A6T5XBY3_9STRA1.920e-4257.36Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A1V9ZSG9_9STRA2.930e-4255.47Actin-depolymerizing factor n=1 Tax=Achlya hypogyn... [more]
K0SV25_THAOC9.860e-4254.26ADF-H domain-containing protein n=1 Tax=Thalassios... [more]
A0A4D9D6Y0_9STRA1.280e-4151.47ADF-H domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7S1D6V8_CYCTE1.370e-4157.36Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1V9ZGW8_9STRA1.900e-4154.41Actin-depolymerizing factor n=1 Tax=Thraustotheca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig979contigD-mesarthrocarpus_Contig979:10420..12305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FYP5
PFAMsCofilin_ADF
Model size1886
Max annot lvl2759|Eukaryota
KEGG koko:K05765
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.19e-16
EggNOG OGsKOG1735@1|root,KOG1735@2759|Eukaryota
Descriptionactin filament depolymerization
Cds size126
COG categoryO
BRITEko00000,ko00001,ko04131,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.1507485-UTR-D-mesarthrocarpus_Contig979:10419..107071680791130.1507485-UTR-D-mesarthrocarpus_Contig979:10419..10707Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig979 10420..10707 +
1680791130.1841364-UTR-D-mesarthrocarpus_Contig979:10833..123051680791130.1841364-UTR-D-mesarthrocarpus_Contig979:10833..12305Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig979 10834..12305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.165051-CDS-D-mesarthrocarpus_Contig979:10707..108331680791130.165051-CDS-D-mesarthrocarpus_Contig979:10707..10833Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 10708..10833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig979.2.1prot_D-mesarthrocarpus_Contig979.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig979 10708..10833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig979.2.1

>prot_D-mesarthrocarpus_Contig979.2.1 ID=prot_D-mesarthrocarpus_Contig979.2.1|Name=mRNA_D-mesarthrocarpus_Contig979.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=42bp
MIYAGSKEAIKSALVGIGVHLQATDQGELELDYIKSQVLRV*
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mRNA from alignment at D-mesarthrocarpus_Contig979:10420..12305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig979.2.1 ID=mRNA_D-mesarthrocarpus_Contig979.2.1|Name=mRNA_D-mesarthrocarpus_Contig979.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1886bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:10420..12305+ (Discosporangium mesarthrocarpum MT17_79)
ACTGGCGTGACCGTTAGCGACGTGGCAGTGGACCAGTTCAACGCGTTCAA GCTCCACCGTGTCCCGTTCAACCACCGCTACTTCATCTACAAGGTTGAGG GTGCGGAGATCGTCGTGGACTCTTTTGGAGAGAAGTCCAAAACGTACGAT GATTTCTGCGCAGCCTTGCCACCTGACGAGTGCCGTTATGGCGTCTTCGA CCTCGACTTCCACTCGCGAGACGGGCGTCCTACAAACAAGCTCATTTTTA TCACATGGACCCCAGACACCGCCCCTGTCAAGACCAAAATGATATATGCA GGGTCTAAGGAAGCGATCAAGTCAGCCTTGGTCGGTATTGGGGTGCACCT CCAGGCCACTGATCAGGGGGAACTTGAGCTCGATTACATTAAGTCTCAGG TGCTGAGGGTCTAAATTCATCTGGATATTAGGTCTGCGGTGCAGGGGCAT TGTGGGGGGGGGGGAGTCGGGAAGGGGCATGAAGGAGACCAGTGGTTGAA TCATGGGACCTTGACAAGGGCCTTGGAGGCAATGTGATAAGACTCCGGGG GATTGTGCGGAGAGGGGAGAGGTCTTAGCGAGTATACGAGGTGTAGGTGC CATGCTCCCTGTACACCTGAGTTTCTCCAGCTTTCTTTGTTGCCTCACCC CTCTCGTACTCCGTGTATATCATTTGATGGAAAAGATCAAGTCACTCTCT CCAAGCGAGAAACAGGCCCTTGGTGATTGTGATGATGATACACAGGTTGG TATTAACAAGGAAATGCTGCGGGGCATGTTTTTGCCATTTTTTGTGGGGC AGTAGTCGGCCTTTTTTTTGCCACAGGTAGTGACCTGGAGCCATTGGCAT CCTTGCGGCCTTGTGTAGGGTGCAGGGAAGGTGCTGTGGGGGCTTCTTTG GAGGGGGGGGAGGGCATGGTGAATCAGGTTCATTCTGGTCGATAGGGAGG GGGGTAGGGTGCAAGTGTGGGTATAATGAAGGGGTGGAGTAGCGCAGTAC AGATTATTTTGGGTCGTGCGTAATGTGTCCAACAGGCTGTGTTTGTTTGT TTTTTGAGGGGGGGGAGTGGGGGCAGCAGGTGGCGTGGGTGGCGCAGTGA TGGTGTTTTCACTTGGCTTGAGGTGGGATCGCTGGCAGTTTCAGGGAAGA TCGTGAGACCGAGGAGAGAAACGCCGTCTTGGTACAACACGGTGCAGACT TATAATTATAACATGAGTAAAAAAGTCGAGCAAAATTTGACCTTTCCCAT TTTTGACTGAGAAGGAGAAAGCCTCGTGTTTTTGTTTTCTCTGCATGCCA TTACTGCCCTCCCACGACACCCCGAGTTTTTTTTTTTTTTTGCCTCAGTC CCTCCTCGTATCGCCTCGTGCGTCTTCGTCGTGGGAGGAAAGAAAGGGAA GTTAGGGGCGAGGAAATGTGACCTGTTCATCCATGTGTCCCTCCCTGTGT ACGCTACTGCTCCTGCCCCTGCCCCTCCCCCTCTCTGTCGGCAAGACGGG TGTGCAGCTAACTTATCGCACGATTCGGAAAAAAGGAAAGTGGCTCTAGA ACTGTTGTGTGAGGAGGGAAGGCCCTTTTTTCCCTCCTTGCCCTGGGTGG TCTGTCTGTTGTCCTAGTGTCCTTGCTTCTCTTCCTTCGCTGCTTGAAAA AATGGAAAAGGCGACAGTGCCAGGAGAGGCCTGAGCGAGGTCTGAAAGTC GGGATGGGATGAATGCATGGCAAGATCGTTGTGAGGTGAAATATATATAT ATATATAATATTTTTTTATGCAGGAGGTTCCTCAGCATCTTGCATGGTCA CGTTAAGGTTGCTTGTGCCTTGTGCCTTTTGCTTTTTGCAATTTGCTTTT TGCCACACTTGTCTCGACTGTGCCTCCCTCTGTGGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig979:10420..12305+

>mRNA_D-mesarthrocarpus_Contig979.2.1 ID=mRNA_D-mesarthrocarpus_Contig979.2.1|Name=mRNA_D-mesarthrocarpus_Contig979.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=126bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:10420..12305+ (Discosporangium mesarthrocarpum MT17_79)
ATGATATATGCAGGGTCTAAGGAAGCGATCAAGTCAGCCTTGGTCGGTAT
TGGGGTGCACCTCCAGGCCACTGATCAGGGGGAACTTGAGCTCGATTACA
TTAAGTCTCAGGTGCTGAGGGTCTAA
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