mRNA_D-mesarthrocarpus_Contig979.7.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig979.7.1
Unique NamemRNA_D-mesarthrocarpus_Contig979.7.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig979.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig979contigD-mesarthrocarpus_Contig979:24624..25203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size580
Hectar predicted targeting categoryother localisation
Exons1
Cds size486
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.093962-UTR-D-mesarthrocarpus_Contig979:24623..247171680791130.093962-UTR-D-mesarthrocarpus_Contig979:24623..24717Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig979 24624..24717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791130.1080616-CDS-D-mesarthrocarpus_Contig979:24717..252031680791130.1080616-CDS-D-mesarthrocarpus_Contig979:24717..25203Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig979 24718..25203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig979.7.1prot_D-mesarthrocarpus_Contig979.7.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig979 24718..25203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig979.7.1

>prot_D-mesarthrocarpus_Contig979.7.1 ID=prot_D-mesarthrocarpus_Contig979.7.1|Name=mRNA_D-mesarthrocarpus_Contig979.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=162bp
KDRVEEATQRDLKYDGCGLIRIVGRALGWVTRLSDWLLGALIFCDDLLPF
SCYYMYACFGLGLGSFFLRGFPARHSFPPSLRPFCLCAPKDWHGSRATKR
VALGPPMKAGLGYTDILCCLAFPHVGCYTSAWNSQPKCGVLKRICVGGGW
SAGIRLVQWFS*
back to top

mRNA from alignment at D-mesarthrocarpus_Contig979:24624..25203-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig979.7.1 ID=mRNA_D-mesarthrocarpus_Contig979.7.1|Name=mRNA_D-mesarthrocarpus_Contig979.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=580bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:24624..25203- (Discosporangium mesarthrocarpum MT17_79)
AAGGACAGGGTGGAGGAGGCGACCCAAAGGGACCTGAAGTATGACGGGTG
TGGGCTCATTCGCATCGTTGGAAGGGCTCTGGGGTGGGTGACAAGACTCT
CTGACTGGCTCCTTGGCGCCCTCATCTTTTGTGATGATTTGCTTCCTTTT
TCCTGTTATTATATGTACGCTTGTTTTGGGTTAGGGTTAGGATCCTTTTT
CCTTCGGGGCTTTCCAGCAAGGCACAGTTTCCCCCCCTCCCTCCGCCCAT
TCTGCCTTTGTGCCCCCAAAGATTGGCATGGAAGCAGGGCAACGAAAAGA
GTGGCACTCGGCCCACCTATGAAAGCAGGGTTAGGGTACACTGACATTCT
CTGTTGCCTTGCCTTCCCTCACGTGGGGTGCTACACTTCTGCGTGGAACA
GCCAACCCAAATGCGGCGTCCTGAAAAGAATATGCGTGGGAGGAGGGTGG
AGTGCTGGCATTCGATTGGTTCAGTGGTTTTCGTAGGTGCAAATTCCGTG
GTGTGCTTTGTCTGGTGAGGTGGAGGCACAGCAGAGAGAGATTCCACATA
TATATATATATATATTTATGAATGATCGCC
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig979:24624..25203-

>mRNA_D-mesarthrocarpus_Contig979.7.1 ID=mRNA_D-mesarthrocarpus_Contig979.7.1|Name=mRNA_D-mesarthrocarpus_Contig979.7.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=486bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig979:24624..25203- (Discosporangium mesarthrocarpum MT17_79)
AAGGACAGGGTGGAGGAGGCGACCCAAAGGGACCTGAAGTATGACGGGTG
TGGGCTCATTCGCATCGTTGGAAGGGCTCTGGGGTGGGTGACAAGACTCT
CTGACTGGCTCCTTGGCGCCCTCATCTTTTGTGATGATTTGCTTCCTTTT
TCCTGTTATTATATGTACGCTTGTTTTGGGTTAGGGTTAGGATCCTTTTT
CCTTCGGGGCTTTCCAGCAAGGCACAGTTTCCCCCCCTCCCTCCGCCCAT
TCTGCCTTTGTGCCCCCAAAGATTGGCATGGAAGCAGGGCAACGAAAAGA
GTGGCACTCGGCCCACCTATGAAAGCAGGGTTAGGGTACACTGACATTCT
CTGTTGCCTTGCCTTCCCTCACGTGGGGTGCTACACTTCTGCGTGGAACA
GCCAACCCAAATGCGGCGTCCTGAAAAGAATATGCGTGGGAGGAGGGTGG
AGTGCTGGCATTCGATTGGTTCAGTGGTTTTCGTAG
back to top