mRNA_D-mesarthrocarpus_Contig9771.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9771.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9771.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig9771.3.1 vs. uniprot
Match: D7G2X9_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X9_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.110e-21
Identity = 57/96 (59.38%), Postives = 67/96 (69.79%), Query Frame = 2 
Query:  104 PVDAVVCSGGGFDAEGLQDRVLVAAMLWGAGIRAEYLPSTRLSAKSSRTAVGAGGAGGVWSAVGLEGVTEACSKVGVPFVVVVRVHTLVTKRAVKV 391
            PVDA+VC+GGGF+++GLQ+RVLVAA LW  GIRAEYL +  L     R   G GG        GLEG  EAC  +G+PFVVVVR HTLV K+AVKV
Sbjct: 1426 PVDAIVCAGGGFESQGLQERVLVAARLWAGGIRAEYLATDALV----RAGAGKGG--------GLEGAAEACLSLGIPFVVVVRPHTLVAKKAVKV 1509
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BLAST of mRNA_D-mesarthrocarpus_Contig9771.3.1 vs. uniprot
Match: A0A835YR31_9STRA (Non-specific serine/threonine protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR31_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.910e-10
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 2 
Query:  104 PVDAVVCSGGGFD--AEGLQDRVLVAAMLWGAGIRAEYLPSTRL--------------SAKSSRTAVGAGGAGGVWSAVGLEGVTEACSKVGVPFVVVVRVHTLVTKRAVKV 391
            PV+ +VC+G G +  A  + DR LVAA LW A +R++YLPS RL              ++ +S + V A GAGG   ++ L+ V+EACS+  +PFVVVV+ H L  K  VKV
Sbjct: 1443 PVEVLVCNGSGLNDAAANIMDRALVAAHLWVADVRSDYLPSDRLREGGRGRNARDPHVNSYASHSYVTASGAGG--DSLLLDQVSEACSRAQIPFVVVVKPHLLRQKGCVKV 1552
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9771.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2X9_ECTSI3.110e-2159.38Non-specific serine/threonine protein kinase n=1 T... [more]
A0A835YR31_9STRA3.910e-1042.86Non-specific serine/threonine protein kinase n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9771contigD-mesarthrocarpus_Contig9771:1980..3795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G2X9
PFAMsHGTP_anticodon2,Pkinase,RWD,tRNA-synt_His
Model size528
Max annot lvl2759|Eukaryota
KEGG koko:K16196
KEGG Pathwayko04138,ko04140,ko04141,ko05160,ko05162,ko05164,ko05168,ko05169,map04138,map04140,map04141,map05160,map05162,map05164,map05168,map05169
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.45e-09
EggNOG OGsCOG0124@1|root,KOG1035@2759|Eukaryota
EC2.7.11.1
Descriptioneukaryotic translation initiation factor 2alpha kinase activity
Cds size318
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.1395063-UTR-D-mesarthrocarpus_Contig9771:1979..20361680791129.1395063-UTR-D-mesarthrocarpus_Contig9771:1979..2036Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9771 1980..2036 +
1680791129.1531553-UTR-D-mesarthrocarpus_Contig9771:2746..28461680791129.1531553-UTR-D-mesarthrocarpus_Contig9771:2746..2846Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9771 2747..2846 +
1680791129.1645083-UTR-D-mesarthrocarpus_Contig9771:3424..34451680791129.1645083-UTR-D-mesarthrocarpus_Contig9771:3424..3445Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9771 3425..3445 +
1680791129.1876028-UTR-D-mesarthrocarpus_Contig9771:3763..37951680791129.1876028-UTR-D-mesarthrocarpus_Contig9771:3763..3795Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9771 3764..3795 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791129.1771586-CDS-D-mesarthrocarpus_Contig9771:3445..37631680791129.1771586-CDS-D-mesarthrocarpus_Contig9771:3445..3763Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9771 3446..3763 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9771.3.1prot_D-mesarthrocarpus_Contig9771.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9771 3446..3763 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9771.3.1

>prot_D-mesarthrocarpus_Contig9771.3.1 ID=prot_D-mesarthrocarpus_Contig9771.3.1|Name=mRNA_D-mesarthrocarpus_Contig9771.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=106bp
MLWGAGIRAEYLPSTRLSAKSSRTAVGAGGAGGVWSAVGLEGVTEACSKV
GVPFVVVVRVHTLVTKRAVKVSRTVFFPLTGGFCFLRHCPSARHAADYDI
TAHPC*
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mRNA from alignment at D-mesarthrocarpus_Contig9771:1980..3795+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9771.3.1 ID=mRNA_D-mesarthrocarpus_Contig9771.3.1|Name=mRNA_D-mesarthrocarpus_Contig9771.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1816bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9771:1980..3795+ (Discosporangium mesarthrocarpum MT17_79)
GGGGATAGGTGGGGCACTGGGGAATGCTGGAGCGGGGGCAGGGGGTTCGG
GATTGAGGTGAGGGGAGAGAGCTACAGCAAGGTGCTCACTGCGGAAGAAA
GCCCAACTAACGTAGCGCGTGATCCTTGCAGGAAACTTAGGGTGAGAGTT
ATGGTTAGGGTTAGAGAGGAGTCCTTCTACTTGTTATCAAGACTGATGTG
CTTTTTTTGGCGTGTTCGTTGTTGCCCCGGATGGTAAACCGCGTGCTTAT
CGATCGAGCCGCATGCACCACCGAGCGCGCGTTTCCGCCTCTTTTCCTTC
ATAAAGCTCTACCTTACCCTTCAGTATCCCAGTGGGGAGGCCTGGCAACC
AGAGAAGTACAGAAATCGTTGCAGTGAGCAACCAATCGTCACGTTCATTA
GGGGCTCTTCGTGTGCAATCTGTGCTCGTTCATACGCCCCCGGGGGGCTG
GAGAGCGATTTGGCTTTCAGACTCCGAAGGGCCGCATTTCAATAGCAGTT
TGAGACCGCCCCCAGTATGGTCAGCACGTGCATACGGTTGGCCTACTGAG
AAGTGCCGCAAACTTTCGTGGATTGTTTTTGCCGGCTGGGCATCCTTTTA
AGCCGATGAGATAGCGAACCGCCGGGATCGAGCAAGGCGAACCCTCCGAG
CGTCAAGGTCTGGGCAGAAGTCGTCTTCAAACACGGAGTATTGTAGCACT
GAGAAACCGAAGCGGAACATATGCTACGAAGGGGAAGAGACTGATGGAGT
TTCTCCTCCCGCCGCAGGTCTCACTTCCATATCCAAGGAGTGCATGGGAG
CTTCCTAGGGTCGCCCGTGGATGCTGTCGTGTGCTCCGGGGGCGGGTTTG
ATGCAGAGGGTTTGCAGGTGATGTGGGTTACAGGACGGTAGGGGTTTTGT
TTGTTTTTGGAATAGGTAGGTGCTGTTTTGCCAGTCGCTGAAGCCAGTGG
CGTGAGGGGGGCTGCCTAGATTGGCGTTTAACAGCGTTCCGAATCCTGAT
TGATGGGGGGGGGTTAAAAAGGAGGAATCTTCGTTTGTGGTGGCTCTCTT
GTTTGGGAGCTTTAGCGAACTTCAATGAACTGCACTATAGCTGTGCTCTA
CCAACAGTTCGTCCTCCACTTCGAAGTGGATTAAATTACTGTATGCCGTA
ACCCTAAACTTGTGGAGCCTCTTGACTCTAGAGTACAAAACTTTTAATGG
AGCACAGTGACAGATCGTAAGCAAAAATCCCAGGTGGAGTCACCCACACA
CTGCAGTAGTACCCAGTTTAAATGGCTAGAGAGCAGCTCCACAAGCACCG
TATGCCATCATCAATACCCCGGTCCAATACTTGCAATTTCAAGGGGCGTT
TATGACAAGGTTAATACTTCTGTTGACTCCTTTCCTTCTGCTTTTCCGGT
CACCTTCAACTCATGAATCCGGCTTCCGATCGTTTCTTGGCACAGGACCG
GGTGCTTGTTGCCGCGATGCTGTGGGGTGCCGGGATAAGGGCGGAGTACC
TGCCCTCCACGAGGCTGTCCGCCAAGTCCAGTCGCACAGCAGTAGGGGCC
GGGGGAGCAGGTGGGGTCTGGTCTGCCGTGGGCCTGGAGGGTGTCACAGA
GGCATGCTCAAAGGTTGGGGTCCCATTTGTGGTGGTGGTGAGGGTGCACA
CGCTGGTGACCAAACGAGCCGTCAAGGTAAGCAGGACTGTTTTTTTTCCT
CTGACCGGGGGGTTTTGCTTTCTGAGGCATTGCCCATCCGCGAGGCACGC
TGCGGACTATGACATTACTGCACACCCTTGTTGATAACCTGATTAGATCC
CTGGGCTGGTTGCCAC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9771:1980..3795+

>mRNA_D-mesarthrocarpus_Contig9771.3.1 ID=mRNA_D-mesarthrocarpus_Contig9771.3.1|Name=mRNA_D-mesarthrocarpus_Contig9771.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=318bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9771:1980..3795+ (Discosporangium mesarthrocarpum MT17_79)
ATGCTGTGGGGTGCCGGGATAAGGGCGGAGTACCTGCCCTCCACGAGGCT
GTCCGCCAAGTCCAGTCGCACAGCAGTAGGGGCCGGGGGAGCAGGTGGGG
TCTGGTCTGCCGTGGGCCTGGAGGGTGTCACAGAGGCATGCTCAAAGGTT
GGGGTCCCATTTGTGGTGGTGGTGAGGGTGCACACGCTGGTGACCAAACG
AGCCGTCAAGGTAAGCAGGACTGTTTTTTTTCCTCTGACCGGGGGGTTTT
GCTTTCTGAGGCATTGCCCATCCGCGAGGCACGCTGCGGACTATGACATT
ACTGCACACCCTTGTTGA
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