mRNA_D-mesarthrocarpus_Contig9711.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9711.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9711.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9711.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9711contigD-mesarthrocarpus_Contig9711:3901..4596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.1628296-UTR-D-mesarthrocarpus_Contig9711:3900..40111680791124.1628296-UTR-D-mesarthrocarpus_Contig9711:3900..4011Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9711 3901..4011 -
1680791124.1896143-UTR-D-mesarthrocarpus_Contig9711:4455..45961680791124.1896143-UTR-D-mesarthrocarpus_Contig9711:4455..4596Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9711 4456..4596 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791124.1788003-CDS-D-mesarthrocarpus_Contig9711:4011..44551680791124.1788003-CDS-D-mesarthrocarpus_Contig9711:4011..4455Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9711 4012..4455 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9711.3.1prot_D-mesarthrocarpus_Contig9711.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9711 4012..4455 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9711.3.1

>prot_D-mesarthrocarpus_Contig9711.3.1 ID=prot_D-mesarthrocarpus_Contig9711.3.1|Name=mRNA_D-mesarthrocarpus_Contig9711.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=148bp
MAVSRREPRHRGSDASTATSTQDDFTITSVEATAETDAWTETMLPNVGIS
TTSLIREVEWGCGVEGRSEGGAGWAELDVMVSGTAGAGNINERVFLTERT
FVISKPECVSTVCSVSEEEGTGRSSGRHKVKRSTIISKQDEMVRTCR*
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mRNA from alignment at D-mesarthrocarpus_Contig9711:3901..4596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9711.3.1 ID=mRNA_D-mesarthrocarpus_Contig9711.3.1|Name=mRNA_D-mesarthrocarpus_Contig9711.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=696bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9711:3901..4596- (Discosporangium mesarthrocarpum MT17_79)
TGGGCACATCAGCAGAAGCCGAGGTCAAAACTGTGCCTACGAGACGATTT
TTGCGTGAGTCCAAGCCGAAGCGCTCGGGAGGGCGACAGATGAGCTGTGG
GCCTAATTGAATCCAAATCTAGGGGCGCCGGAATATCCGACATGGCCGTC
TCACGAAGGGAACCTCGGCACCGTGGTAGCGATGCGAGTACCGCGACATC
AACCCAAGATGATTTCACGATCACTTCAGTCGAGGCCACAGCCGAAACTG
ACGCATGGACCGAAACCATGCTCCCAAACGTTGGAATATCCACCACTTCG
TTGATCAGGGAAGTAGAGTGGGGATGCGGGGTCGAAGGCCGCAGCGAAGG
GGGTGCAGGCTGGGCCGAGCTCGACGTCATGGTCTCCGGGACTGCGGGTG
CTGGGAACATCAATGAGCGAGTATTCCTGACCGAACGAACTTTCGTGATC
AGCAAACCAGAGTGTGTAAGCACCGTGTGCTCAGTTTCAGAGGAAGAAGG
CACGGGGCGAAGCTCGGGGAGGCACAAAGTAAAGAGAAGCACGATCATAA
GTAAACAAGATGAAATGGTCCGCACTTGTCGCTAATGTTAGGCGACTTAC
CTTCAGTTCAAGGAAAATCAAAACGAGTCAGCATCAATCGAGACATGTCA
TCACAAGTTCAGTCGCCCCAGTTGTATTATTGCTTATAGCTTTGGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9711:3901..4596-

>mRNA_D-mesarthrocarpus_Contig9711.3.1 ID=mRNA_D-mesarthrocarpus_Contig9711.3.1|Name=mRNA_D-mesarthrocarpus_Contig9711.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=444bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9711:3901..4596- (Discosporangium mesarthrocarpum MT17_79)
ATGGCCGTCTCACGAAGGGAACCTCGGCACCGTGGTAGCGATGCGAGTAC
CGCGACATCAACCCAAGATGATTTCACGATCACTTCAGTCGAGGCCACAG
CCGAAACTGACGCATGGACCGAAACCATGCTCCCAAACGTTGGAATATCC
ACCACTTCGTTGATCAGGGAAGTAGAGTGGGGATGCGGGGTCGAAGGCCG
CAGCGAAGGGGGTGCAGGCTGGGCCGAGCTCGACGTCATGGTCTCCGGGA
CTGCGGGTGCTGGGAACATCAATGAGCGAGTATTCCTGACCGAACGAACT
TTCGTGATCAGCAAACCAGAGTGTGTAAGCACCGTGTGCTCAGTTTCAGA
GGAAGAAGGCACGGGGCGAAGCTCGGGGAGGCACAAAGTAAAGAGAAGCA
CGATCATAAGTAAACAAGATGAAATGGTCCGCACTTGTCGCTAA
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