mRNA_D-mesarthrocarpus_Contig10190.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10190.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10190.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A6H5KP25_9PHAE (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP25_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 1.930e-80
Identity = 121/178 (67.98%), Postives = 154/178 (86.52%), Query Frame = 1
Query:    1 QAASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            +AA KF++V+P+LG+SF  V+ PED+ VYGGLCALATF REE+++R+LDNA+FKNFLDL+PQVREL +DFANSRY++CL +LA ++G+L LDLHLH H+  LYK +EDKCLMQYFSPY+SV+L AMSE+ GM+VPELEKKVAAL+I NQ+ ARIDS N+TLH KH +QR  S+RK+ E
Sbjct:  287 KAARKFVDVAPELGSSFDRVVAPEDIAVYGGLCALATFSREEMRQRVLDNASFKNFLDLVPQVRELTNDFANSRYRSCLKYLADLKGDLQLDLHLHRHLDTLYKMVEDKCLMQYFSPYSSVRLGAMSEAFGMEVPELEKKVAALVISNQISARIDSTNATLHAKHIEQRGISFRKMHE 464          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A7S0HHU9_9EUKA (Hypothetical protein n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHU9_9EUKA)

HSP 1 Score: 195 bits (496), Expect = 9.750e-58
Identity = 91/176 (51.70%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVL 531
            AA KFLE +P+LG+SF  ++ P+DV  YG LCALA+F R E+K +++DN  F++FL+L+P+VREL+HDF NSRY +CL  L  ++ +L LDLHLH HV  LY +I  K L+QYFSP+ +V +  M+++    V ELEK++A LI+  Q+ ARIDS N  LH +HADQR+ +++K L
Sbjct:  197 AARKFLETNPELGSSFHEIVSPQDVATYGALCALASFDRAELKAKVIDNTNFRSFLELVPEVRELVHDFYNSRYASCLKTLEKLKPDLLLDLHLHDHVAALYTDIRSKALVQYFSPFVTVDMKRMADAFNTPVMELEKELATLIMAGQIPARIDSHNKVLHARHADQRTATFQKAL 372          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A7S4JGJ4_9EUKA (Hypothetical protein n=3 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JGJ4_9EUKA)

HSP 1 Score: 190 bits (482), Expect = 1.130e-57
Identity = 93/176 (52.84%), Postives = 126/176 (71.59%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVL 531
            AA KF+EVSP+LG++FS V   +D+ +YGGLCALA+F R E+K +LLDN  FK  L+L P+VREL+HDF NS+Y ACL +L  ++ +L LDLHLH HV  L + I  K L+QYFSPY  V + AM+++   QV +LE+++A LI   Q+ ARIDS N  L+ +H DQRS ++ K L
Sbjct:   20 AARKFVEVSPELGSAFSDVASQQDIALYGGLCALASFDRSELKTKLLDNGGFKQLLELFPEVRELVHDFHNSKYAACLQYLRKLKPDLLLDLHLHDHVDSLLEAIHSKALVQYFSPYVRVNMVAMADAFYFQVDQLERELAKLIGSGQIEARIDSHNKVLYARHDDQRSATFTKAL 195          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: CSN1_ARATH (COP9 signalosome complex subunit 1 n=39 Tax=Brassicaceae TaxID=3700 RepID=CSN1_ARATH)

HSP 1 Score: 195 bits (496), Expect = 1.420e-57
Identity = 94/177 (53.11%), Postives = 132/177 (74.58%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFL+V+P+LG S++ VI P+D+  YGGLCALA+F R E+K++++DN  F+NFL+L+P VRELI+DF +SRY +CL +LAS++  L LD+HLH HV  LY  I  K L+QY  P+ SV LS M+++    V  LEK++ ALI  NQ+ ARIDS N  L+ +HADQR+ +++KVL+
Sbjct:  234 AARKFLDVNPELGNSYNEVIAPQDIATYGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQ 410          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: L8GVV1_ACACA (PCI domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GVV1_ACACA)

HSP 1 Score: 194 bits (494), Expect = 2.880e-57
Identity = 93/176 (52.84%), Postives = 129/176 (73.30%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVL 531
            AA KFLE + DLG  F+ +I P+DV ++GGLCALA F R E+K ++LDN AFKNFL+L+PQVRELI DF NSRY +CL +L  +R EL+LD+HLH HV  LY+ I +K ++QYFSP+TSV L+ M+++    VP LEK++A LI+ N + ARIDS N  L+ +  ++R  ++ + L
Sbjct:  228 AARKFLETTFDLGNHFNEIISPQDVAIFGGLCALAMFDRAELKSKVLDNTAFKNFLELVPQVRELIADFYNSRYASCLNYLQQLRPELELDIHLHDHVESLYQKIRNKAIVQYFSPFTSVDLNTMAQAFNTDVPILEKELAGLIMENSIQARIDSHNKILYARTTNERCNTFERAL 403          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A2C9VUH0_MANES (PCI domain-containing protein n=9 Tax=fabids TaxID=91835 RepID=A0A2C9VUH0_MANES)

HSP 1 Score: 193 bits (491), Expect = 6.550e-57
Identity = 92/177 (51.98%), Postives = 130/177 (73.45%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFLEV+P+LG S++ VI P+DV  YGGLCALA+F R E+K +++DN  F+NFL+L+P+VRELIHDF +S Y +CL +L +++  L LD+HLH HV  LY  I +K L+QY  P+ SV L+ M+ +    V  LEK++ ALI  NQ+ ARIDS N  L+ +HADQR+ ++++VL+
Sbjct:  226 AARKFLEVTPELGNSYTEVIAPQDVATYGGLCALASFERTELKNKVIDNLNFRNFLELVPEVRELIHDFYSSHYASCLDYLGNLKANLLLDVHLHDHVETLYDQIRNKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLQ 402          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A0V0ID26_SOLCH (Putative COP9 signalosome complex subunit 1-like n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0ID26_SOLCH)

HSP 1 Score: 189 bits (481), Expect = 7.090e-57
Identity = 90/177 (50.85%), Postives = 126/177 (71.19%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFLEV P+LG +++ VI P+D   YGGLCALA+F R E+K +++DN  F+NFL+L+P++RELIHDF  S Y +CL +L +++  L LD+HLH HV  LY  I  K L+QY  P+ SV L+ M+ +    V  LEK++ ALI  NQ+ ARIDS N  L+ +HADQR+ +++KVL+
Sbjct:   95 AARKFLEVGPELGNNYTEVIAPQDAATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEIRELIHDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRSKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQ 271          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: UPI001CB8C359 (COP9 signalosome complex subunit 1 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8C359)

HSP 1 Score: 192 bits (488), Expect = 3.300e-56
Identity = 91/177 (51.41%), Postives = 129/177 (72.88%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFLE SP+LG ++S VI P+DV  YGGLCALA+F R E+K +++DN  F+NFL+L+P+VRELIHDF +SRY +CL +L +++  L LD+HLH HV  LY  I +K L+QY  P+ SV L+ M+++    V  L+K++  LI  NQ+ ARIDS N  L+ +HADQR  ++++VL+
Sbjct:  252 AARKFLETSPELGNNYSEVIAPQDVATYGGLCALASFDRAELKAKVIDNINFRNFLELVPEVRELIHDFYSSRYASCLQYLVNLKANLMLDIHLHDHVDALYVRIRNKALIQYTHPFVSVDLNMMADAFKTSVSGLQKELEGLITDNQIQARIDSHNKVLYARHADQRKATFQRVLQ 428          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: A0A445ADS6_ARAHY (PCI domain-containing protein n=3 Tax=Arachis TaxID=3817 RepID=A0A445ADS6_ARAHY)

HSP 1 Score: 192 bits (487), Expect = 3.470e-56
Identity = 93/177 (52.54%), Postives = 129/177 (72.88%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFLE +P+LG+ +S VI P+DV  YGGLCALATF R E+K +++DN  F+NFL+L+P+VRELI+DF +S Y +CL +L +++  L LD+HLH HV  LY  I  K L+QY  P+ SV LS M+ +    V EL+K++ ALI  NQ+ ARIDS N  L+ +HADQR+ ++++VLE
Sbjct:  239 AARKFLETNPELGSHYSEVIAPQDVATYGGLCALATFDRTELKSKVIDNLNFRNFLELVPEVRELINDFYSSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLSMMANAFKTTVAELQKELEALITDNQIQARIDSHNKILYARHADQRNATFQRVLE 415          
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Match: M1CNN0_SOLTU (Cop11 protein n=12 Tax=Solanaceae TaxID=4070 RepID=M1CNN0_SOLTU)

HSP 1 Score: 191 bits (485), Expect = 6.010e-56
Identity = 91/177 (51.41%), Postives = 127/177 (71.75%), Query Frame = 1
Query:    4 AASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDNAAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVTKLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQMLARIDSKNSTLHGKHADQRSTSYRKVLE 534
            AA KFLEV P+LG +++ VI P+DV  YGGLCALA+F R E+K +++DN  F+NFL+L+P++RELIHDF  S Y +CL +L +++  L LD+HLH HV  LY  I  K L+QY  P+ SV L+ M+ +    V  LEK++ ALI  NQ+ ARIDS N  L+ +HADQR+ +++KVL+
Sbjct:  233 AARKFLEVGPELGNNYTEVIAPQDVATYGGLCALASFDRAELKSKVIDNINFRNFLELVPEIRELIHDFYTSHYASCLEYLGNLKANLLLDIHLHDHVETLYDQIRSKALIQYTHPFVSVDLNMMANAFKTSVAGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQ 409          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10190.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KP25_9PHAE1.930e-8067.98PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S0HHU9_9EUKA9.750e-5851.70Hypothetical protein n=2 Tax=Phaeocystis antarctic... [more]
A0A7S4JGJ4_9EUKA1.130e-5752.84Hypothetical protein n=3 Tax=Prymnesium polylepis ... [more]
CSN1_ARATH1.420e-5753.11COP9 signalosome complex subunit 1 n=39 Tax=Brassi... [more]
L8GVV1_ACACA2.880e-5752.84PCI domain containing protein n=1 Tax=Acanthamoeba... [more]
A0A2C9VUH0_MANES6.550e-5751.98PCI domain-containing protein n=9 Tax=fabids TaxID... [more]
A0A0V0ID26_SOLCH7.090e-5750.85Putative COP9 signalosome complex subunit 1-like n... [more]
UPI001CB8C3593.300e-5651.41COP9 signalosome complex subunit 1 n=1 Tax=Erigero... [more]
A0A445ADS6_ARAHY3.470e-5652.54PCI domain-containing protein n=3 Tax=Arachis TaxI... [more]
M1CNN0_SOLTU6.010e-5651.41Cop11 protein n=12 Tax=Solanaceae TaxID=4070 RepID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10190contigD-mesarthrocarpus_Contig10190:71..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LM81
PFAMsPCI,RPN7
Model size534
Max annot lvl2759|Eukaryota
KEGG koko:K01265,ko:K12175
Hectar predicted targeting categoryother localisation
Exons4
Evalue5.54e-83
EggNOG OGsKOG0686@1|root,KOG0686@2759|Eukaryota
EC3.4.11.18
Descriptionprotein deneddylation
Cds size534
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.3855789-CDS-D-mesarthrocarpus_Contig10190:70..2561680789162.3855789-CDS-D-mesarthrocarpus_Contig10190:70..256Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10190 71..256 +
1680789162.398534-CDS-D-mesarthrocarpus_Contig10190:960..11121680789162.398534-CDS-D-mesarthrocarpus_Contig10190:960..1112Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10190 961..1112 +
1680789162.4148724-CDS-D-mesarthrocarpus_Contig10190:2588..26491680789162.4148724-CDS-D-mesarthrocarpus_Contig10190:2588..2649Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10190 2589..2649 +
1680789162.4270124-CDS-D-mesarthrocarpus_Contig10190:3044..31791680789162.4270124-CDS-D-mesarthrocarpus_Contig10190:3044..3179Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10190 3045..3179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10190.1.1prot_D-mesarthrocarpus_Contig10190.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10190 71..3179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10190.1.1

>prot_D-mesarthrocarpus_Contig10190.1.1 ID=prot_D-mesarthrocarpus_Contig10190.1.1|Name=mRNA_D-mesarthrocarpus_Contig10190.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=178bp
QAASKFLEVSPDLGTSFSGVIVPEDVGVYGGLCALATFHREEVKRRLLDN
AAFKNFLDLIPQVRELIHDFANSRYKACLGHLASIRGELDLDLHLHSHVT
KLYKNIEDKCLMQYFSPYTSVKLSAMSESLGMQVPELEKKVAALIIGNQM
LARIDSKNSTLHGKHADQRSTSYRKVLE
back to top

mRNA from alignment at D-mesarthrocarpus_Contig10190:71..3179+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10190.1.1 ID=mRNA_D-mesarthrocarpus_Contig10190.1.1|Name=mRNA_D-mesarthrocarpus_Contig10190.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=3109bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10190:71..3179+ (Discosporangium mesarthrocarpum MT17_79)
CAGGCTGCGTCCAAGTTCCTGGAGGTGTCCCCAGACCTTGGGACATCGTT CTCAGGGGTCATCGTCCCAGAGGATGTGGGGGTCTACGGAGGGCTGTGCG CCCTAGCCACCTTCCACCGGGAGGAGGTGAAGAGGAGGCTGCTGGACAAC GCGGCCTTCAAGAACTTCCTTGACCTGATCCCCCAGGTAAGGTCCGGTTG GTTTGCCCGCCACCCACAAGGGAAGGCAAGGGCAAGGGCAAGGGCGACTG AGAAAGACGGTGAACGAACCGGGTGTGCAGGTGGTCAGCAAGAAGAAAAA AAAAGGAAGCGAGGAGCGTTTTTTTTTCCCCCTGTTGACAGGGGACGGCG GGCGGCGCTTCTTCTTTTTTATTGTTGTTGTTGTTGCCGTAGTTGTGGCC GCCCGTCGCCGTTGGTGTCGTCGTCATTGTCTCCGTGCCTGCTGGGTTTC CTGCCTGCCAGTCAGTCCTGTGCGGGACAGTGGAGGGCTCCTAACCCTAA CCCTAACCCTAACCCTAACCCTAACCCTATCGCCGCCGCCCACTCTCGGT GGGTGTACCGGTGAGACAGAAAACATCCAAGCAAAGAAGTCGCTGCCCGT TGCCTCTGCGTTGAAGCTCCTGGCTGTTTTCGCTGAATTTCCGTGACCCT CATTCCCCCTAACCCTAATTCCCCCTAACCCTAACCCTAACCCTGACCCT AACCCTAACCCTAACCCTTACCCAAAGCTAAGAGGTCGGTGTCACCTTGC TTACGGGTGGCAGGTGTGTGGCCGGGGTGGGTGGAATCGCTGTAAAAAGA CCAGATAACATCTAGGCCGATGGTTAGGACTGATCGATCCCCCCTCCCCC CCCCCCCCGTCCCCTTGTCCTCTTCTATCCCCTGCTTGAGGTGCGGGAGC TGATCCACGACTTTGCCAATAGCAGGTACAAGGCCTGCCTGGGCCACCTG GCCTCTATCAGGGGGGAGCTGGATCTTGACCTCCACCTGCACAGTCATGT GACAAAGCTGTACAAGAACATCGAGGACAAGTGCCTCATGCAGTGAGTAA CACTCTCTTCTCTCATCCTCTTTTCTCTTCTCTGTTGGTTCTGAGGATGT GTGCGTGGTGTTACAAGAAGTGGGGTGTGATGTGCTGCATAGCTGTAGTT TATTCTATTCGATTCTCTCATTTTCTTTTCTCTTCTCTTCTCCTCTCTTC TCCTCTCTTCTCTGTAGCTTGTGAGAAATGCATGACAACTGCCGTAATGG GACGGGAGTTTGCAATGCGTAACTGTTTAACTGTAGCTCATCTCCTACAT TATGTCTTCTTAACACACCCATTGGGTCCCTTGGCCAGTGTGGGCTTGTT TCTTGGAGGGGTCAAGGAAGGTTGAGATTAGGGTTAGGGTTCCATCGTCT GCCCAGCGCCGCTCATCAGACTTGAGCAAAGGGGGTTCTTCCCAGGCTCT GATGCCAGGCAAGGCCTGCTGCATGCTTTTCCTGTGTTTGTTCGGCGCAG CATTTTTTTCCTGGTTCTCTCTTTGCTTCGTCACCTGGGGCCAGGGGTGG CTTTCCAATCAGATCCGCGGCACCCATCAAGAACACCTCTTGAATTGCAT ACCAGTGTCTAGGAGCATTTTGGGGTGTCTGGGGTATCTAGGGGGGGGTC GAGGAGGATCTGTAGTGGTAGGGACTACCAAAGGGCCTTCCACATGCCTT TCCCACACTAATCCTCCTCCATTTGGTCCCTGGTCAACCGCCGCCTATCA TCTGGTTTGGTGTAGAGGTTAGCATTACGGGGTTGGGGTAATATAAAGCA ATAATAGTCGTAGTAATAGTCATCGTAGTAGTAATACAGCTATAGGGTTA GGGTTAGGGTTAGTACGAAGCAATATCAGTGGTAGTAGTCATACAGCTAT AGGGCTAGGGTTAGAGTTAGGGTTACGGCAGGGGCATGTAGCACGGTGTG GATCAAGTACTGTCCTGTTGGCCAGCATGCCTCGCCCTTTGTTAGCCATC CCTTTGCTCGTGGTCCCTGTAACGTGTCCCTCTCTTCATCAGTGGGCACA CTATGCCTTGTTTGTGTGGGTGAGGGGGTCTGCTCAGTCCTATGGGTGTA CCTTGGGGTGGCAAGAACCGAACCCCCCTTAAGAAACCAAGACAAAACCC ATGTCCCCGCTGGCCACGGTTAGACTGGAGGCCTATCCCTCAGGAAGGGG GCAGAACTGAAGTGAAAATCTAATCTGTCGGGCACACAAGGACAGAGCCA GATTTGTAATGAAGGTTGAAAGAGCACGGGTGTCAGGAAAGTGCAGACTC AAGAACTTTGACCAGAAGAGAATGGGAAGGCTAAGTGCTGGAAATATGCT GGGCACGACTGCGGTGCTTGTAGATGATAAGCACAAGTAGTCAGCCCTCT TGATCGCGGCTTAGGGTTAGGGATGTTGAAGAGTCCGATTGGCTTGGTGT GTATGCACGCACGATGTTGACATCGGTACATGCCCAACACTTTTTGTGTG TTATTCCCTTCCTCTCAGGTACTTTTCCCCGTACACCTCGGTGAAACTGT CAGCCATGTCGGAGTCCTTGGGCATGCAGGTGAGATACCGGTATGTAGCA GGGAGAGGGCATGAAGGGGTGCGCGGGGGAGCGGGGGGGGGGGTTATGCC CCTGCCATGGAATAGGCTGGGAAATTAGATAGCAGTTTCTGCTGCTTCTC ACCGATGCATTCCCGTATCCAGGACGGGAAAAAAAAACCCCGATAGAAGC GAAAAGAGAATGAAAAAGAACAAGAACAAGGGAAAGAAAAGGCAGCCGGC CGCAAGCAGCTTCGATATTACTCCCTCTCCAAGACTCTCCCTTCCGCCTT GTTGTTCTTCCCAGTCGCACCCGCGCGCGCACGCAAGGGCCGTGGCACCA CACCATCCTGGCGTGACTTTTCTTCGTCACAAAAAAAAAAAAGCTGAGGG CCTGCCCCATGTTGTGCTGAGCAGGTGCCCGAGCTGGAGAAGAAGGTGGC GGCCCTGATCATCGGGAACCAGATGCTAGCGAGGATTGACAGCAAGAACT CCACCCTTCATGGGAAGCACGCCGACCAGCGGAGCACCAGCTACCGTAAG GTGCTTGAG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10190:71..3179+

>mRNA_D-mesarthrocarpus_Contig10190.1.1 ID=mRNA_D-mesarthrocarpus_Contig10190.1.1|Name=mRNA_D-mesarthrocarpus_Contig10190.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=534bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10190:71..3179+ (Discosporangium mesarthrocarpum MT17_79)
CAGGCTGCGTCCAAGTTCCTGGAGGTGTCCCCAGACCTTGGGACATCGTT
CTCAGGGGTCATCGTCCCAGAGGATGTGGGGGTCTACGGAGGGCTGTGCG
CCCTAGCCACCTTCCACCGGGAGGAGGTGAAGAGGAGGCTGCTGGACAAC
GCGGCCTTCAAGAACTTCCTTGACCTGATCCCCCAGGTGCGGGAGCTGAT
CCACGACTTTGCCAATAGCAGGTACAAGGCCTGCCTGGGCCACCTGGCCT
CTATCAGGGGGGAGCTGGATCTTGACCTCCACCTGCACAGTCATGTGACA
AAGCTGTACAAGAACATCGAGGACAAGTGCCTCATGCAGTACTTTTCCCC
GTACACCTCGGTGAAACTGTCAGCCATGTCGGAGTCCTTGGGCATGCAGG
TGCCCGAGCTGGAGAAGAAGGTGGCGGCCCTGATCATCGGGAACCAGATG
CTAGCGAGGATTGACAGCAAGAACTCCACCCTTCATGGGAAGCACGCCGA
CCAGCGGAGCACCAGCTACCGTAAGGTGCTTGAG
back to top