mRNA_D-mesarthrocarpus_Contig9698.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9698.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig9698.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9698.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9698contigD-mesarthrocarpus_Contig9698:2956..4621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size492
Hectar predicted targeting categoryother localisation
Exons3
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.1807852-UTR-D-mesarthrocarpus_Contig9698:2955..31131680791122.1807852-UTR-D-mesarthrocarpus_Contig9698:2955..3113Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig9698 2956..3113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791122.1958547-CDS-D-mesarthrocarpus_Contig9698:3113..31511680791122.1958547-CDS-D-mesarthrocarpus_Contig9698:3113..3151Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9698 3114..3151 +
1680791122.2091038-CDS-D-mesarthrocarpus_Contig9698:3763..39561680791122.2091038-CDS-D-mesarthrocarpus_Contig9698:3763..3956Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9698 3764..3956 +
1680791122.2215664-CDS-D-mesarthrocarpus_Contig9698:4519..46211680791122.2215664-CDS-D-mesarthrocarpus_Contig9698:4519..4621Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9698 4520..4621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9698.3.1prot_D-mesarthrocarpus_Contig9698.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9698 3114..4621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9698.3.1

>prot_D-mesarthrocarpus_Contig9698.3.1 ID=prot_D-mesarthrocarpus_Contig9698.3.1|Name=mRNA_D-mesarthrocarpus_Contig9698.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=111bp
MSEDMPATTEMSRFDLVKSHKRACQEDLRPSFSKGDKQRRISRGGATTPR
GAGEVVGGKGDGSASQLGKGKGKVKAKAVSSGGAAVSVSGAGAESVPSIP
GGGECTVRGLS
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mRNA from alignment at D-mesarthrocarpus_Contig9698:2956..4621+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9698.3.1 ID=mRNA_D-mesarthrocarpus_Contig9698.3.1|Name=mRNA_D-mesarthrocarpus_Contig9698.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1666bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9698:2956..4621+ (Discosporangium mesarthrocarpum MT17_79)
CCAAGCCAAGCCAACCCGTAAGAAATTGGTCGTCCAAAGGCTCGGCTGGA
TGCACCCGCCCCTAAGAACGTGCACCTGAGTAGGGGTGTAAAGAAATAAT
CTTAGCCAAGTGATAAGTTTGGGGGGATCATCCTTATTGACCCCTGCTCT
CTGGGAATATGAGTGAGGATATGCCTGCGACTACGGAGATGTCGAGGTAG
GTCGAGGAAGGGGTTGACCCCCATGATGGTGGATTGAGAGTTAACGCCGA
TCCTGGACTGAAAGATACGCGTTGGCAAGGATGCTTCCCTTTCCAGATGC
AATAAAATTCCCACCTGGGACTGCTTTCATTGAGTCTATAGCGTAGCACA
CTTTCGACTTGGTTGTTGAGTGCTACGCGCCTTAGTTCCTGTGATCGACG
AAGGCCCAGTGACTCTCTCTTTGCCATCAAGATCCGTAGCAGTGGGCACT
GCGTCCAGCTATCTTACACAGACCTTGGTATTTTTGGTAGAAGATTGTCT
TTGGCCAAGGCACCATCCCTAAGCCCCTTAGTCTGCTCGTGTCACCAGTC
CATTTGACGCTTTGTCTGCCCCGGAACTGTTGGCATCCGGCTTCGTCAAG
CCCCTCGAGGGTCATTTGAGGGCAGGGTCATGCCCTAAGAATTTGCCTGC
AGTTTCGAGCATGTACTACCCTTCCTCGGGTTGCCTTAACTCCCTCCAAT
TCCCCAATGCGTGGTTAAAACCATGGTCTTCTCGATCACCGTAATACGCA
CACCCTCTTCACCTCCGCCTCTTGATTTTCCCCTTCTATGCCGGGCGGCG
ACGTCAAGGTTCGACCTAGTCAAGTCCCATAAGCGCGCTTGTCAGGAAGA
TCTTCGACCTAGCTTCTCGAAAGGCGACAAACAACGTCGTATTTCTCGGG
GAGGGGCAACGACACCCAGGGGTGCTGGGGAGGTTGTAGGCGGAAAGGGG
GATGGAAGTGCTAGTCAGCTAGGGAAGGGGAAGGGAAAGGTGAAGGCGAA
GGTATGCAAGGGGGACTCAATAGATGCAGTGACCTAATGTGACGTTGAGA
TACCCTCCTCATTTCTCCCTCTTGCGCGAACAAGACATTTGCCTTCGAGC
ATAGTGATTTGCTCATTTTTGGCAGAGGGCTGCAAGGGTTAGGGTTTTAA
CACTGCAAATTGCCGCTGTCTTCCTCTCTTCATGCCTCACCTCATGCCAT
TCCTTCCTTGAAGTATAACAAATAATGTACAGGTGACTAGACTCCCTGCC
CATTGTAACCTGTGACCCTAACCCCATGCAACCTTGTCCCCATGCAACCC
CAACCATTTTACCTTGCCCGCTTGCCGTGTTGGTTGTTGGGTGTTGCATA
TCCTCTGGAGAATAAAGCATGCACTGTGGTCAGCTAACAGTGGTATGTGT
GTATTTGTGTCTTATTGATTATATATTTTTGTTCATGATAGCCCTTTTCC
CTCGTCAGGCCCACAATCGAACAAAGAAATATATGTATCCTAACCCTATC
CCTAACCCTAACCGCACCCGCCATGACTTTTATGCATTTGTGCACCCCTC
CCTTTGCCCCACAGGCGGTCTCTAGTGGGGGTGCAGCTGTGAGTGTCTCC
GGGGCGGGGGCAGAATCAGTACCATCAATCCCTGGTGGGGGGGAATGTAC
GGTGAGGGGGCTGAGC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9698:2956..4621+

>mRNA_D-mesarthrocarpus_Contig9698.3.1 ID=mRNA_D-mesarthrocarpus_Contig9698.3.1|Name=mRNA_D-mesarthrocarpus_Contig9698.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=333bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9698:2956..4621+ (Discosporangium mesarthrocarpum MT17_79)
ATGAGTGAGGATATGCCTGCGACTACGGAGATGTCGAGGTTCGACCTAGT
CAAGTCCCATAAGCGCGCTTGTCAGGAAGATCTTCGACCTAGCTTCTCGA
AAGGCGACAAACAACGTCGTATTTCTCGGGGAGGGGCAACGACACCCAGG
GGTGCTGGGGAGGTTGTAGGCGGAAAGGGGGATGGAAGTGCTAGTCAGCT
AGGGAAGGGGAAGGGAAAGGTGAAGGCGAAGGCGGTCTCTAGTGGGGGTG
CAGCTGTGAGTGTCTCCGGGGCGGGGGCAGAATCAGTACCATCAATCCCT
GGTGGGGGGGAATGTACGGTGAGGGGGCTGAGC
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