mRNA_D-mesarthrocarpus_Contig1019.3.3 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1019.3.3
Unique NamemRNA_D-mesarthrocarpus_Contig1019.3.3
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A6A7GA17_9CRUS (Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7GA17_9CRUS)

HSP 1 Score: 203 bits (517), Expect = 3.170e-56
Identity = 102/266 (38.35%), Postives = 155/266 (58.27%), Query Frame = 1
Query:   49 LWVARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRLNPS--KDMSSYRTGT-RNRDQFFWYVLPFLVIDYVFPRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYLFGSV 837
            +W+ R   + VI   +     +DE +   W   RT+++ +HDSFEP +    F++  SF+  +D   P    Y+ +    +D  ++R    R + +F  YV P L+ D+++PRR L  +  +  RL+ EV   + +YD  FF  H  +H +P+++  +HA+HH     +A + ++ +F +  ++V CSI A+N    H LSRAVY++VII  + ELH GYD PW L NVVPFG++GG VRH +HH  G  Y QKF TYLD LFG V
Sbjct:   23 VWLTRGFYACVISLSLRHVTVLDEALRWFWESARTTFIWKHDSFEPFIVVSTFFLVFSFWGAIDKLCPQFHKYKFHAHIVEDWKTFRFPVDRIKSEFIGYVAPLLIFDFLYPRRRLPADSVSFGRLWFEVTLCLLIYDALFFVAHWLLHIIPTVFRAIHARHHDMIPIKALDTIRLSFAEQIINVSCSIIAVNVSGSHPLSRAVYNIVIICLLVELHCGYDMPWMLQNVVPFGIIGGSVRHDRHHVVGTVYYQKFFTYLDNLFGFV 288          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A1Y1I1Z9_KLENI (Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I1Z9_KLENI)

HSP 1 Score: 199 bits (506), Expect = 8.200e-55
Identity = 103/255 (40.39%), Postives = 160/255 (62.75%), Query Frame = 1
Query:   58 ARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRLNPSKDMSSYRTGTRNRDQFFWYVLPFLVIDYVFPRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHH-RSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLD 819
            AR  + L+I +V +  ++ +  +A +W   R+  LV+HDSFEP ++   F+I+   + VLD +VPS   Y+L+ S ++ +++     R +  +Y+ P LV D+++PRR L++ PP+  R+  +V+GA+ +YD+ FF  H A+H +P L    HA+HH      RA +A +   L+    V  +I +LN L CH LSR ++++ I + +TE+H+GYDFPW LH VVPF L+GG VRH QHH  G  Y Q+F TYLD
Sbjct:    7 ARGCICLLIAAVAFYHKSANAAVAAVWDTYRSIPLVQHDSFEPLVAVTAFFIWTRMWHVLDVYVPSLRVYKLHLSHNIKAWKLEGYPRWEAVYYLAPLLVFDWIYPRRKLDQPPPSVERVVFDVIGALLIYDLLFFFSHLALHKVPFLRR-FHARHHVMGGDMRACDATRAHPLEELALVTFAITSLNLLRCHFLSRFIFNITIGYMLTEVHSGYDFPWMLHRVVPFKLVGGSVRHGQHHAKGDRYYQQFFTYLD 260          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A7S2S5J1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S5J1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.770e-46
Identity = 91/239 (38.08%), Postives = 138/239 (57.74%), Query Frame = 1
Query:  109 AVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRLNPSKDMSSYRTGTRNRDQF-FWYVLPFLVIDYVFPRRVLEKEPPTTL-RLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLD 819
            ++D  +   W+ ++     +HD+FEP ++T  F ++I  F +LD  +     Y ++P       R G   + +    Y+      D+++PRR L    P    ++ L +V A+ VYD  FF  H A+H +  L    H KHH      + E ++H+F+DG++ VMC+I ALN L  H  SR +Y++V+ + +TE+H GYD PW LHNV+PFGLLGG VRH++HH  GR Y Q+F TYLD
Sbjct:    2 SIDSAVERSWSWIKEKQWFQHDTFEPLVATLSFAVWIHAFRILD--LMPLGQYIIDPKYRALDARVGFGVKVKSGLVYLGTLFTFDFLYPRRKLPDTCPGGAGKVLLHIVLALFVYDFLFFHIHVAMHKVEGLR-SFHKKHHSVRGLHSTEVLRHSFVDGSLQVMCNIAALNLLKLHPYSRTLYNIVVTYMLTEIHCGYDLPWMLHNVIPFGLLGGSVRHEEHHITGRRYFQQFFTYLD 237          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A7S0SGA9_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SGA9_9CHLO)

HSP 1 Score: 172 bits (435), Expect = 2.550e-44
Identity = 95/268 (35.45%), Postives = 143/268 (53.36%), Query Frame = 1
Query:   55 VARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLD--HFVPSAWG--YRLNPS---------KDMSSYRTGTRNRDQFFWYVLPFLVIDYVFPRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLD 819
            + RL+  +++  V      +D  +A+ WA  R + L++ D+FEP L    F I++  +  +D   +   AW   YRL P               ++       +F  Y++P L  D+++PRRVL  + PT   +  EV+G + +YD  F   HT +H +P L+  VHAKHH     RA E  + +  +   D  CSI AL     H LSRAVY++VI+F + E+H+GYD PWQL NVVP G++ G  +H +HH  GR    KF ++LD
Sbjct:   18 LCRLVCVMLVAGVCAHAEQLDACVADFWAWARETRLMKWDTFEPALVMTVFTIFLLSWQSIDLGRWGSHAWSARYRLQPGGPEGKTHAEHSRKIWKAEGYGAQEFLLYLVPLLAFDWLYPRRVLPTQAPTVAGMAAEVLGTLVLYDALFTASHTVMHGVPWLFKRVHAKHHLHRHVRAREIFRLSAPEEVADTGCSILALTLTRAHPLSRAVYNVVIVFLLCEIHSGYDMPWQLCNVVPGGVVMGSRQHVEHHATGRGAYAKFFSFLD 285          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A7S2UXV7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXV7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 8.220e-43
Identity = 82/192 (42.71%), Postives = 110/192 (57.29%), Query Frame = 1
Query:  319 RDQFFWYVLPFLVIDYVFPRRVL----EKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPS------------------LYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYLF 828
            +++  WY+ P +  D + PRR L      + P+ L +  ++  ++  YDV FF  H  +H  P                   LY  +HAKHH     RA EAV+HTFLDG+M V CSI AL     H L+RA++++V+I  +TELHAGYD PW LHNV+P G+LGGP RH  HH  G  Y Q+ GTYLD+ F
Sbjct:    2 QEELIWYIFPLVAFDLILPRRHLLLENHADSPSALVVLWQLACSLFWYDVLFFFLHAFLHLGPGFLWGSGSKSGGVKESVGWLYRTIHAKHHSQPHLRACEAVRHTFLDGSMTVGCSILALKLAGSHPLARALHNIVLIGLLTELHAGYDLPWALHNVMPAGILGGPPRHDDHHRTGTRYYQQLGTYLDWFF 193          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A7S2MS10_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MS10_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.040e-39
Identity = 79/178 (44.38%), Postives = 106/178 (59.55%), Query Frame = 1
Query:  337 YVLPFLVIDYVFPRRVLEKE---PPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYLFGSVPPATELAK 861
            YVL   + D   PRR  +      PT L +  EV+G++ +YD+ FF  H  +H +P LY  VHAKHHRS+  RA + V  +F++  +DV  SIFALN L CH +SR +Y+++I F +TELH G+ FPW    VVPFGL  G   H  HH +G  Y QKF  ++D LFG V    +  K
Sbjct:   65 YVLXLYIWDICIPRRAAKIAIWGAPTALGICKEVMGSLLLYDLGFFVCHYLMHKVPLLYKYVHAKHHRSSEVRASDIVNLSFVEEIVDVGISIFALNFLGCHPISRTLYNIIITFMLTELHCGFAFPWTPQFVVPFGLATGSKGHHYHHRNGYHYYQKFFCHVDRLFGFVQKEDDTIK 242          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: UPI001EE5E4AC (cholesterol 25-hydroxylase-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE5E4AC)

HSP 1 Score: 129 bits (323), Expect = 3.560e-29
Identity = 79/278 (28.42%), Postives = 127/278 (45.68%), Query Frame = 1
Query:   55 VARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRLNPSKDMSSYRTGTRNRDQFFWYVLPFLVID---------------------YVFPRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYL 825
            + R +++L   + VY    +     + W  L  S L     FE  L+T C+ + I  +    H++ S   Y++ PS             D    Y  P +++D                     ++   R L  +PP+   L  +++ ++ +YD  FF  H A+H    LY   HA HH   V  A    Q T  +    ++ + FAL   + H ++RA++  V I+ + + H GYD PW LH +VPFG++GGP +H  HH +G+ + Q F TYLD L
Sbjct:   31 IIRGVIALTAAACVYYYDPIQRWTNSAWYWLLQSSLFNSVYFESWLATFCYAVLIPIYPYALHYMKSLNKYKVRPSVTYEHQSIAGMLLDAVI-YTAPLMLLDTFIVKKYHGVDPEIWVEKRKSWIQTTRALPLDPPSFSGLVFDLIASVLLYDAMFFFLHFALHKNFWLYKTFHALHHDHDVMHAHVTNQLTVGERLALILSANFALKVFNSHPVTRALFVPVFIYLLIDNHTGYDLPWGLHKIVPFGIMGGPRKHYAHHLEGKRHYQPFLTYLDNL 307          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A0L0FVG3_9EUKA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FVG3_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 1.400e-28
Identity = 90/308 (29.22%), Postives = 137/308 (44.48%), Query Frame = 1
Query:   52 WVARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRL---------------NPSKDMSSYRTGTRNRDQ---------------------------------FFWYVLPFLVIDYVFPRRVLEKE---PPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHR-SAVQRAPEAVQHTFLDGTMDVMCSIFALNALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLD 819
            W  RL +  + V  VY    +D +I N+W QL  S L   DSFEP ++   F  +I  + + D      W   +               N    M+      RN  Q                                    +++P    D +FPRR +  +    P+  R+  EVV A+ +YD  F+ WH  +HS   +Y  VHA HH+ ++   A E ++ + ++  +D + S+  LN L CH LSR  +++VI++ +TELH G D+PW  HNV+PF L+ GP  H +HH        KF T+ D
Sbjct:   41 WFIRLSLVSLAVCYVYNPTIMDAVIGNVWLQLLDSPLYMWDSFEPTVAVLSFVFFIFAWWLHDFGARFYWHKLMCVVQRCMGKGSTGLDNLCVTMNDRTATKRNSGQRQKRIPDELRPMHKAWHTRAAVPMAEYAQYAFIAVMFLVPLYAFDLLFPRRHMRLDGVGAPSFGRVCCEVVCALLLYDSIFYFWHRFMHSDARVYRIVHAVHHKYTSPITARETIRLSVVELWVDSIISVVTLNVLFCHPLSRCTFNVVIVYLLTELHCGCDYPWMPHNVIPFNLVTGPKIHGKHHRLPNRAFAKFFTHWD 348          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A6P7JBS7_9TELE (cholesterol 25-hydroxylase-like protein 2 n=8 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P7JBS7_9TELE)

HSP 1 Score: 115 bits (288), Expect = 1.050e-24
Identity = 80/262 (30.53%), Postives = 123/262 (46.95%), Query Frame = 1
Query:  115 DELIANLWAQLRTSW--LVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWG----YRLNPSKDMSSYRTGTR---NRDQFFWYVLPFLVIDYVF-PRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALN---ALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYLFGS--VPPATEL 855
            D ++   W  L+ +    +R   F   LS   ++I +  + VLD   P+ W     YRL+P + ++     T           YV P  V  +++ P   L +E PT L  FL ++G + V+D  ++ WH   H +P LY   HA HH+      P ++   +L G        +A      L CH L+   + +  ++  TE H GYDFPW +HN+VPFGL GG  +H  HH         F ++ D+L G+  VP A+ L
Sbjct:   28 DLVLQPFWDYLQQNHHDFLRSPLFPVFLSVSTYFILVGLYTVLDLLAPT-WPSINRYRLHPDRPVTWPNIWTTLGVTMYNHLLYVFPAAVAQWLWRPPTPLPREAPTLLSFFLGILGCMVVFDFQYYLWHLLHHRIPWLYRTFHAVHHQ---YNQPFSLVTQYLSGWELFSVGFWATVDPILLQCHCLTTWSFMVFNVYVSTEDHCGYDFPWSVHNLVPFGLWGGAPKHDAHHQRPGTNFAPFFSHWDWLAGTHTVPTASSL 285          
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Match: A0A484CER7_PERFV (Fatty acid hydroxylase domain-containing protein n=7 Tax=Percidae TaxID=8165 RepID=A0A484CER7_PERFV)

HSP 1 Score: 112 bits (281), Expect = 5.820e-24
Identity = 80/256 (31.25%), Postives = 120/256 (46.88%), Query Frame = 1
Query:  160 LVRHDSFEPCLSTCCFYIYISFFAVLDHFVPSAWG----YRLNPSKDMS---SYRTGTRNRDQFFWYVLPFLVIDYVF-PRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCWHTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALN--------ALHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQHHCDGRFYRQKFGTYLDYLFGS--VP-PATELAKEVP 870
            L+R       LS   ++  +  + +LD   P+ W     YRL+P + ++    + T          Y+ P  V  +++ P  +L  E PT    FL ++G   V+D  ++ WH   H +P LY  VHA HH+      P ++   +L G     C +F L          L CH L+   + +  I+  TE H GYDFPW +HN+VPFGL GGP +H  HH         F ++ D+L G+  VP P +  A E P
Sbjct:   25 LLRSPLCPVVLSVTTYFFVVGLYTLLDLLAPT-WPCINRYRLHPHRAVTWPNIWDTLGVTIYNHLLYIFPAAVAQWLWRPPSLLPCEAPTLRSFFLGILGCTLVFDFQYYLWHLLHHRIPWLYRTVHAVHHQ---YNQPFSLVTQYLSG-----CELFNLGFWATVDPIMLQCHCLTTWGFMVFNIYISTEDHCGYDFPWAIHNLVPFGLWGGPPKHDAHHQRPNTNFAPFFSHWDWLGGTHTVPTPLSHAAVEEP 271          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1019.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A7GA17_9CRUS3.170e-5638.35Cholesterol 25-hydroxylase (Fragment) n=1 Tax=Hiro... [more]
A0A1Y1I1Z9_KLENI8.200e-5540.39Cholesterol 25-hydroxylase n=1 Tax=Klebsormidium n... [more]
A0A7S2S5J1_9STRA1.770e-4638.08Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S0SGA9_9CHLO2.550e-4435.45Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2UXV7_9STRA8.220e-4342.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2MS10_9STRA8.040e-3944.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI001EE5E4AC3.560e-2928.42cholesterol 25-hydroxylase-like n=2 Tax=Haliotis T... [more]
A0A0L0FVG3_9EUKA1.400e-2829.22Fatty acid hydroxylase domain-containing protein n... [more]
A0A6P7JBS7_9TELE1.050e-2430.53cholesterol 25-hydroxylase-like protein 2 n=8 Tax=... [more]
A0A484CER7_PERFV5.820e-2431.25Fatty acid hydroxylase domain-containing protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1019contigD-mesarthrocarpus_Contig1019:20869..24958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog529818.AMSG_12425T0
PFAMsFA_hydroxylase,PAH,Sin3_corepress,Sin3a_C
Model size2208
Max annot lvl2759|Eukaryota
KEGG rclassRC00963
KEGG koko:K10223,ko:K11644
KEGG ReactionR07218
KEGG Pathwayko00120,ko04139,ko04919,ko05016,ko05202,map00120,map04139,map04919,map05016,map05202
Hectar predicted targeting categorysignal peptide
Exons5
Evalue1.42e-43
EggNOG OGsCOG3000@1|root,COG5602@1|root,KOG0873@2759|Eukaryota,KOG4204@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010750.1
EC1.14.99.38
Descriptionhistone deacetylation
Cds size891
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1019.3.3prot_D-mesarthrocarpus_Contig1019.3.3Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1019 22165..24937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.2777061-UTR-D-mesarthrocarpus_Contig1019:20868..221641680789162.2777061-UTR-D-mesarthrocarpus_Contig1019:20868..22164Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1019 20869..22164 -
1680789162.3460288-UTR-D-mesarthrocarpus_Contig1019:24937..249581680789162.3460288-UTR-D-mesarthrocarpus_Contig1019:24937..24958Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1019 24938..24958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789162.289983-CDS-D-mesarthrocarpus_Contig1019:22164..223811680789162.289983-CDS-D-mesarthrocarpus_Contig1019:22164..22381Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1019 22165..22381 -
1680789162.3017359-CDS-D-mesarthrocarpus_Contig1019:23357..234971680789162.3017359-CDS-D-mesarthrocarpus_Contig1019:23357..23497Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1019 23358..23497 -
1680789162.3128269-CDS-D-mesarthrocarpus_Contig1019:23910..241111680789162.3128269-CDS-D-mesarthrocarpus_Contig1019:23910..24111Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1019 23911..24111 -
1680789162.3249419-CDS-D-mesarthrocarpus_Contig1019:24310..244811680789162.3249419-CDS-D-mesarthrocarpus_Contig1019:24310..24481Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1019 24311..24481 -
1680789162.3352573-CDS-D-mesarthrocarpus_Contig1019:24775..249371680789162.3352573-CDS-D-mesarthrocarpus_Contig1019:24775..24937Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1019 24776..24937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1019.3.3

>prot_D-mesarthrocarpus_Contig1019.3.3 ID=prot_D-mesarthrocarpus_Contig1019.3.3|Name=mRNA_D-mesarthrocarpus_Contig1019.3.3|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=297bp
MRNCSWNTQLWVARLLVSLVIVSVVYQCRAVDELIANLWAQLRTSWLVRH
DSFEPCLSTCCFYIYISFFAVLDHFVPSAWGYRLNPSKDMSSYRTGTRNR
DQFFWYVLPFLVIDYVFPRRVLEKEPPTTLRLFLEVVGAIAVYDVAFFCW
HTAVHSLPSLYLGVHAKHHRSAVQRAPEAVQHTFLDGTMDVMCSIFALNA
LHCHSLSRAVYDLVIIFFITELHAGYDFPWQLHNVVPFGLLGGPVRHQQH
HCDGRFYRQKFGTYLDYLFGSVPPATELAKEVPLVWRRQRLSKMVS*
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mRNA from alignment at D-mesarthrocarpus_Contig1019:20869..24958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1019.3.3 ID=mRNA_D-mesarthrocarpus_Contig1019.3.3|Name=mRNA_D-mesarthrocarpus_Contig1019.3.3|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=4090bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1019:20869..24958- (Discosporangium mesarthrocarpum MT17_79)
CAGAAACATCAACATATCGATATGAGGAATTGCAGCTGGAATACGCAACT GTGGGTCGCGCGTTTGTTGGTTTCCCTCGTCATCGTGTCCGTCGTATATC AATGCCGTGCAGTCGACGAACTGATCGCCAACCTGTGGGCACAATTGCGG ACGTCTTGGCTTGTTCGACATGACTCTTTCGAGGTGATCGACCCAACGTT CACTTTACCATCCCTGACTGCTATGCGTGAGAGTTAGTAAGTTGTGCTTG GCAACGATGTAATGGTCGTGCCCCCTTCTACTGAAGGTTATGCGTCGGGG CATATCTTTGGCATTGCCCCGAATGCCTCGTATGTTGTCTTACATCTCAG GATACTTTTGTGCAGCTTTGCCTCATCCAAGTGAAGGAGCTCAACAACTA GCAATCTAGATTCATCAATTTCCTTCCCGCTTCTCTGTTCATCCAACGCT CGACCTCTCGCGGGTGCCAAACTCCAGCCGTGCCTTTCCACTTGTTGCTT CTACATCTACATCTCCTTCTTCGCTGTCCTGGATCACTTCGTACCCTCAG CATGGGGTTACCGATTAAATCCATCGAAGGATATGTCATCGTATCGTACA GGGACACGCAATAGAGATCAGTTCTTCTGGTATGTCCTTCCATTTTTGGT GAGTGGATTGGGGTCTTGCATGTTCCAGAGCGGTAGCACGGGAGACGAAG CAAGTCGTGGATTGTCAGGAATGCCCAGTCTCCAGGTGCTTTGCATCACC TCACGATAGTTAGGTGTTGTTTATACAGGGTTTAGTGTTTTTTCCATTTG CAAATCGTTCAGATTCCCCCCCAGACCAACCTCCACGTCTCCTCCAGGTG ATCGACTACGTCTTCCCCAGGCGAGTTCTTGAGAAGGAGCCCCCCACGAC CTTGCGACTGTTCCTGGAAGTGGTAGGCGCGATAGCCGTGTATGACGTAG CGTTCTTTTGCTGGCACACAGCCGTGCACAGTCTACCCAGTCTCTACCTT GGGGTTCACGCTAAGCACCACCGCTCGGCCGTACAACGAGCTCCCGAGGT GAAACGACAAGCATGGCAAAGTTCAATAATTCGAGTTTGGCCAGCAGTTG TATGCGGTGCCTATGCGGGGATTGAGGGAGGGAACTCATTACAAAGATAT AGCTGAAACTACTGATCTCTTTGCGGGGCACAGTTGTAATGTAATGAATA GAGTAGAGCTTGCGAGTAGAACCCTCATGCCACAGGAGGACCCCTGATTC ACCTCGTTTGCAGTGCGCTTTCTGAGTGTTGCATCTGCGGCACAAGGCAG ATACATGAAGGGAACCAAGGAAAGAAGGAAGGGATTGTCCCTGAAGGCTT CAACAGCAGACAGCATGAGGGAGATTGCCATCTCCTCTCCAGTGCTACTG CAGTCTAACGGCCACCCCACCCCACCCCAGCCCTGACCTCCAATGAATGC CTGCCCACCAGGCGGTGCAGCACACATTTTTGGATGGCACCATGGACGTC ATGTGCTCCATCTTTGCCCTGAATGCTCTTCACTGCCACTCTCTGTCCCG CGCTGTCTATGACTTGGTAATCATATTTTTCATCACAGAGCTTCATGCAG GGTGAGTTGCGGACTTTGGTCTGTCGCCCATAGGGTGGGTTAAGGGCTCT ACATCTAGTTGGGCTTGTATGGGCCTGAGTTCTGGCTGTATTTGTGGGCG GAGGTTCCAGTGAAAACGCCTCACAAGGGTTCTGGTGGATATCGGTAAAG GGGGTCTGCGTTGATACTTCCAAGGGTGATCGCAAACCAGGTCTGTAGTT TTTGGTGCTCGTGTTTATTGTGGCAGGAGGATTTCACTGTCCTCCTCGCT TCTTCTCGCTGGAGGTTGTTTAACCCAGCTGTGAAACAGTGAGAGCTTTG ATATGCACTCCATGCCATAGCCCGGTTAGGCGCACCTTCACAGATTTATA CATGGGGCTGACCACATGAAACGGGTGTGATTATTATTTTGCTTCTACTG ATCAGCATTTTCTCGAAAACCCTGCCTGTGGACAGAAGTCCACTCAAGCT GGAGTGTGAAGTCACCTGTGACGAGGATGTCTTGCTCTTAATCTACACCT ACGATGCGAGACCTCAGGCCAAAACCATTTGAACCTGAAATGGGTCAATT TGAATAAAACTGCGTGGGTCTGGAGCCCTCCAGCACCTGAGAGTAAAAAA AAAAATCTTACCTCTCACAACAAAAGCAAAAAAAGAAAAACGTGCTGATG CCCTGTTTTGGTATGCCTGCCTCATTACCCTGTTGAAAGGGATTCCCGTG GGCCTGTGCTGTTTGTTGCCAGAGCGGTGTGTTGCGCATGTGCCATGTGT TGACTGTTGTGCTCTCACCGCATAGATCCCTTTCCCAATTCCTTTCCCAA GTCCTGTGTGTGTTTTTGATTAGATGCCTTGTTTGATCAGCTTTCCTTCT TTTATTTCGGCCTGAGCGTTAGAAAAAAAAAAAGGAAGGGCGTGTGCGAT GTAAAAGGTGCAAGGCCACACCCACCAATCTCCCACTTCCCACCCTCCCA ATGTCCACCTTTCACACTCCCTTAAAGATATGATTTCCCGTGGCAGCTAC ACAATGTGGTCCCATTTGGCTTGCTTGGAGGACCTGTAAGGCATCAACAA CACCACTGTGATGGAAGATTCTACCGCCAAAAATTTGGGACATACCTGGA CTACCTGTTTGGTTCTGTCCCACCCGCAACTGAGCTTGCTAAGGAGGTAC CACTTGTTTGGAGGCGGCAGAGGTTATCCAAGATGGTCTCATGACTCACA GTAGTGACTATGGAAGAATCAGGGTTAGGGTTAGGGTTAGGGTTAGGGTT AGGTCACCGGCGAAGAAGGCAACCCTTGTTCACTAGAGCAGCTCTATGCC CTGAAGGGGGTGCCATGAATTGGGGAAGACTTGTGAAGCAGGGTTTGGTC ACTCTTTTCAGGCTGAGATTGAGATAGATAGGGGGCTACTGTGGTATCTA GACCAGCATTGGTGCATGGCGATGCCTACTGATCAAGCAGGTTTGTTTCC ACACTTTGCCCCTTAGGGTTAGGGTTTTGTCGATCCGGTGCCTTGAGGTA TGATAGTGTGCAACACTCATAAATTTTGGGGCTTAAAGTGACCAGTTTGA TTGGCCAGTGTTCAGAGCTTGGATTGCCTCTGTGCCGGTGAACGATTGCC AGAAAGCCCAGTAGAATAACGGGGAGGCAGGGACGCTGTTTGGGTTTGGG GGGGGGCGGGGTGGGATACAAGGGATCATGTTTCATTTGACCTCTGACAG TGAGTGGCTGCATTGGCAGCGTATGTGGACTATGGATACATGATCAGTGT TGAGGCCATGGCCCTAACCCTTGCCTCTTTTATGGCATGCATTGTACTTT GAAGGCGTTTTCCTTTTTGTTGAAGTTCCAGATCAATCATTTCGTACTCT GAAGCACACTTTTCATTGGTCCACCAATTGAACCCACCGTTTCCTTCCTC CCGGAGCGTTTGGCAAGTGTAGGGCGAATTTAATGGTCGGGAAATGAGTT CCAAGTCAACTTTGAATATGAAGGCAAAGTGTTCCCGGGACAGTGCTTCA AAGTGCAGAATGGGCTTGGAACTAATCTTTATTGGACTTGCGATTATTTT TTTTTGGACCGTGCTTCGTGTGTCGGAAAAAAATTAGATTAAATATATGA ATTGCAGTTAGTGGGGAAGGGTTAATTTGCAGCTTGCGGTCGGGTGCCGT GTAGGACGGTAATTGCTTCTGATCTCAGGGCAGAATCACAGCCCTATTTT GACACCCATGTGTTGCGAACATTTCTCATGATAGTTGGGGCCCGCAGACA TAGGTGCCCCAAAACCGTTTAGGAACTAAACAGCTGAGCTCTATGTCAAT ATTGTAGCCACTGCCATTTTTGTCGACTCCCTTGAGTTCAACAACCAAGA TCGGTTACACAAAGAGTTTTTAAGGTCACGAACATGTTCAGAGAGTGTTA GGCTTGGCTTCTTTTTTTTTACTTACAAAGTGCTGCTGTACTCTAATGGC ACATACAAGTGGCGCACAATAATTCTGTGCACACGTGACT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1019:20869..24958-

>mRNA_D-mesarthrocarpus_Contig1019.3.3 ID=mRNA_D-mesarthrocarpus_Contig1019.3.3|Name=mRNA_D-mesarthrocarpus_Contig1019.3.3|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=891bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1019:20869..24958- (Discosporangium mesarthrocarpum MT17_79)
ATGAGGAATTGCAGCTGGAATACGCAACTGTGGGTCGCGCGTTTGTTGGT
TTCCCTCGTCATCGTGTCCGTCGTATATCAATGCCGTGCAGTCGACGAAC
TGATCGCCAACCTGTGGGCACAATTGCGGACGTCTTGGCTTGTTCGACAT
GACTCTTTCGAGCCGTGCCTTTCCACTTGTTGCTTCTACATCTACATCTC
CTTCTTCGCTGTCCTGGATCACTTCGTACCCTCAGCATGGGGTTACCGAT
TAAATCCATCGAAGGATATGTCATCGTATCGTACAGGGACACGCAATAGA
GATCAGTTCTTCTGGTATGTCCTTCCATTTTTGGTGATCGACTACGTCTT
CCCCAGGCGAGTTCTTGAGAAGGAGCCCCCCACGACCTTGCGACTGTTCC
TGGAAGTGGTAGGCGCGATAGCCGTGTATGACGTAGCGTTCTTTTGCTGG
CACACAGCCGTGCACAGTCTACCCAGTCTCTACCTTGGGGTTCACGCTAA
GCACCACCGCTCGGCCGTACAACGAGCTCCCGAGGCGGTGCAGCACACAT
TTTTGGATGGCACCATGGACGTCATGTGCTCCATCTTTGCCCTGAATGCT
CTTCACTGCCACTCTCTGTCCCGCGCTGTCTATGACTTGGTAATCATATT
TTTCATCACAGAGCTTCATGCAGGATATGATTTCCCGTGGCAGCTACACA
ATGTGGTCCCATTTGGCTTGCTTGGAGGACCTGTAAGGCATCAACAACAC
CACTGTGATGGAAGATTCTACCGCCAAAAATTTGGGACATACCTGGACTA
CCTGTTTGGTTCTGTCCCACCCGCAACTGAGCTTGCTAAGGAGGTACCAC
TTGTTTGGAGGCGGCAGAGGTTATCCAAGATGGTCTCATGA
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