mRNA_D-mesarthrocarpus_Contig9441.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig9441.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig9441.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A836CFQ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFQ8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.040e-23
Identity = 47/67 (70.15%), Postives = 55/67 (82.09%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNV 333
            V QVPK MDE QLRP+FE+AGPIAH+MVIRDRQT  HRGC F+TY +RAA E A+E F+N +KLPN 
Sbjct:   36 VGQVPKHMDEAQLRPIFEKAGPIAHLMVIRDRQTRMHRGCMFITYQTRAAAEAAIEMFNNNVKLPNA 102          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A7R9U3N7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.990e-18
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNV 333
            V Q+PKD++EEQLRP+FE+ G I  + VIRDR T AHRGCAFLTY ++ +G+ A+ + HN+L LP  
Sbjct:  196 VGQIPKDIEEEQLRPIFEEFGEIFELAVIRDRHTGAHRGCAFLTYKTKESGDMAIRELHNRLVLPKA 262          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A7S3UU89_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UU89_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 6.230e-17
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNV 333
            V Q+P+++DE  LRP+FE  GP+  +MVIRD+QT AHR CAFLTY  R + E+A+ + H + KLPN 
Sbjct:   44 VGQIPRELDEAALRPVFEAYGPVFDLMVIRDKQTGAHRRCAFLTYCHRESAEKAIAELHGQKKLPNA 110          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A8K1CEG0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEG0_PYTOL)

HSP 1 Score: 83.6 bits (205), Expect = 1.920e-16
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPN 330
            V QVP+ M+EE LRP+ E  GP+  +++IRD+ T AHRGCAF ++++R A E+A+E+ HNK+ LPN
Sbjct:   35 VGQVPRTMEEEDLRPVLEVYGPLEDLVIIRDKLTGAHRGCAFASFYAREAAEKAIEELHNKVTLPN 100          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A485KNC1_9STRA (Aste57867_9466 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNC1_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.330e-16
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = 1
Query:   97 SRPHGCIPSVAHVAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNVS 336
            S+PH  +     V QVP+ MDE++LRP+ E  GP+  I++IRD+ + AHRGCAF+TY SR A E A+E  HN++ LP  S
Sbjct:   27 SQPHDAVK--LFVGQVPRSMDEDELRPVLEAFGPLYDIVIIRDKISGAHRGCAFVTYCSRDAAEAAIETLHNQVTLPMSS 104          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A484EFV5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFV5_BRELC)

HSP 1 Score: 83.2 bits (204), Expect = 2.640e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  106 HGCIPSVAHVAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLP 327
            H   P    V QVP+ M+EE LRP+ E  GP+  +++IRD+ T AHRGCAF +Y +RAA E+AV++ HNK+ LP
Sbjct:   24 HHSGPVKLFVGQVPRTMEEEDLRPVLEVFGPLEDLVIIRDKITGAHRGCAFASYFTRAAAEKAVQELHNKVTLP 97          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A2D4C1J1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1J1_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 7.500e-16
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNVSM 339
            V QVP+ M+E  LRP+ E  GP+  I++IRD+ T AHRGCAF ++ SR   E+A+E+ HNK+ LPNV +
Sbjct:  491 VGQVPRTMEEMDLRPVLEVYGPLEDIVIIRDKLTGAHRGCAFASFFSRTDAEKAIEELHNKVTLPNVRL 559          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A2D4C1H5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1H5_PYTIN)

HSP 1 Score: 82.0 bits (201), Expect = 7.650e-16
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPNVSM 339
            V QVP+ M+E  LRP+ E  GP+  I++IRD+ T AHRGCAF ++ SR   E+A+E+ HNK+ LPNV +
Sbjct:  934 VGQVPRTMEEMDLRPVLEVYGPLEDIVIIRDKLTGAHRGCAFASFFSRTDAEKAIEELHNKVTLPNVRL 1002          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A5D6YER1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YER1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.300e-15
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLP 327
            V QVP+ M+E+ LRP+ E  GPI  +++IRD+ T AHRGCAF +++SR A ERAV + HNK+ LP
Sbjct:   59 VGQVPRTMEEDDLRPVLEAFGPIEDLVIIRDKLTGAHRGCAFASFYSRDAAERAVAELHNKVTLP 123          
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Match: A0A024TU15_9STRA (Uncharacterized protein n=8 Tax=Aphanomyces TaxID=100860 RepID=A0A024TU15_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.630e-15
Identity = 35/66 (53.03%), Postives = 51/66 (77.27%), Query Frame = 1
Query:  133 VAQVPKDMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVEKFHNKLKLPN 330
            V QVP+ MDE++LRP+ E+ GP+  I++IRD+ + AHRGCAF+TY SR A E A++  HN++ LP+
Sbjct:   46 VGQVPRTMDEDELRPILERFGPLYDIVIIRDKISGAHRGCAFVTYCSRNAAEAAIDTLHNQVTLPS 111          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9441.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFQ8_9STRA2.040e-2370.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9U3N7_9STRA4.990e-1856.72Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S3UU89_HETAK6.230e-1753.73Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A8K1CEG0_PYTOL1.920e-1653.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KNC1_9STRA2.330e-1650.00Aste57867_9466 protein n=1 Tax=Aphanomyces stellat... [more]
A0A484EFV5_BRELC2.640e-1651.35Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A2D4C1J1_PYTIN7.500e-1652.17Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4C1H5_PYTIN7.650e-1652.17Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A5D6YER1_9STRA1.300e-1555.38Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024TU15_9STRA1.630e-1553.03Uncharacterized protein n=8 Tax=Aphanomyces TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9441contigD-mesarthrocarpus_Contig9441:3518..4423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000016180
PFAMsRRM_1
Model size342
Max annot lvl121069|Pythiales
Hectar predicted targeting categorysignal peptide
Exons2
Evalue1.58e-16
EggNOG OGsKOG0144@1|root,KOG0146@2759|Eukaryota,1MAPQ@121069|Pythiales
DescriptionCUG-BP-and ETR-3-like factor. Source PGD
Cds size342
COG categoryA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791098.2060194-CDS-D-mesarthrocarpus_Contig9441:3517..37641680791098.2060194-CDS-D-mesarthrocarpus_Contig9441:3517..3764Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9441 3518..3764 +
1680791098.2230182-CDS-D-mesarthrocarpus_Contig9441:4328..44231680791098.2230182-CDS-D-mesarthrocarpus_Contig9441:4328..4423Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig9441 4329..4423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9441.1.1prot_D-mesarthrocarpus_Contig9441.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig9441 3518..4423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig9441.1.1

>prot_D-mesarthrocarpus_Contig9441.1.1 ID=prot_D-mesarthrocarpus_Contig9441.1.1|Name=mRNA_D-mesarthrocarpus_Contig9441.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=114bp
SQPARPPLPYLIFFLSISTGGSRPTALGLCLSSRPHGCIPSVAHVAQVPK
DMDEEQLRPLFEQAGPIAHIMVIRDRQTDAHRGCAFLTYHSRAAGERAVE
KFHNKLKLPNVSM*
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mRNA from alignment at D-mesarthrocarpus_Contig9441:3518..4423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig9441.1.1 ID=mRNA_D-mesarthrocarpus_Contig9441.1.1|Name=mRNA_D-mesarthrocarpus_Contig9441.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=906bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9441:3518..4423+ (Discosporangium mesarthrocarpum MT17_79)
AGCCAGCCCGCTCGACCCCCTTTACCCTATCTCATCTTTTTCTTATCCAT ATCCACCGGTGGCTCTCGTCCAACCGCGCTGGGCTTGTGTCTGTCGTCAC GACCGCACGGTTGCATTCCGTCTGTTGCACACGTTGCACAGGTCCCCAAG GACATGGATGAGGAGCAGCTGCGGCCCCTGTTCGAACAAGCTGGGCCCAT CGCCCACATTATGGTAATCAGGGATCGCCAAACGGATGCGCACCGTGGTG AGTAGACTAGGCACTAACTTTGGCTGCTTGCAGTTTTTCCTGCGAATTTG AGCACTATAGATGTGCAAGTGCACCGTTGCCACCGTGATGTACTAAAGAC GGGTTAGGTAACCGGGCACGACGACGCAGTATTAGCGAGTTGGGAGCTTG TCGGTGCAGTCGGCGGGGGCGAGGCTCTTCGTCAAAGATACGGTTACCCT CTAGTCGAGGTTTTTGTGCAAGCATGGGGTCGGAGACTTTGGGATGGTTG CTGCGGGATTGCGGAGAAAACATAGCCCGGCACGAGGGCCCTGGCCTGCG TATTCCCCCTCCCTTGGACTGCTCAAGCACCAGAACCTCCAGTTATGTGC TCGGTTATCGTTCAGGTACCGCAATCCACGCTACTCTCCGCGGTGGGGCG AGGCCACCGTGGTGCCCGGGGAAATGCTGAGCGTAGCGACAAACGGGAAA ACGCTATAGAGCTTCGTCGCCGTAGTCTCTCCATATATGTGGTATCCGTA TCGCTCACAGGTATTTGACTCCCTGATGCTCCCCCTTCCCGCCCATCTTT CCTGTGCACAGGCTGTGCGTTTCTTACGTATCATTCCCGGGCAGCGGGAG AGCGGGCAGTGGAGAAGTTCCACAACAAGTTGAAGCTACCGAATGTAAGT ATGTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig9441:3518..4423+

>mRNA_D-mesarthrocarpus_Contig9441.1.1 ID=mRNA_D-mesarthrocarpus_Contig9441.1.1|Name=mRNA_D-mesarthrocarpus_Contig9441.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=342bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig9441:3518..4423+ (Discosporangium mesarthrocarpum MT17_79)
AGCCAGCCCGCTCGACCCCCTTTACCCTATCTCATCTTTTTCTTATCCAT
ATCCACCGGTGGCTCTCGTCCAACCGCGCTGGGCTTGTGTCTGTCGTCAC
GACCGCACGGTTGCATTCCGTCTGTTGCACACGTTGCACAGGTCCCCAAG
GACATGGATGAGGAGCAGCTGCGGCCCCTGTTCGAACAAGCTGGGCCCAT
CGCCCACATTATGGTAATCAGGGATCGCCAAACGGATGCGCACCGTGGCT
GTGCGTTTCTTACGTATCATTCCCGGGCAGCGGGAGAGCGGGCAGTGGAG
AAGTTCCACAACAAGTTGAAGCTACCGAATGTAAGTATGTAG
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