mRNA_D-mesarthrocarpus_Contig10186.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10186.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10186.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: D7FME5_ECTSI (5'-3' exoribonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME5_ECTSI)

HSP 1 Score: 226 bits (575), Expect = 7.060e-70
Identity = 111/120 (92.50%), Postives = 116/120 (96.67%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEAKKLAESK 360
            MGVPKFYRWISERYPKINQI+SDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSER+I+LG+F YIDRIVTHI RPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDM EAK +AESK
Sbjct:    1 MGVPKFYRWISERYPKINQIVSDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSERDIILGIFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMQEAKLIAESK 120          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A835Z4G8_9STRA (XRN 5'-3' exonuclease N-terminus-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G8_9STRA)

HSP 1 Score: 201 bits (512), Expect = 9.560e-58
Identity = 96/113 (84.96%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRW+SERYPKINQI+SD++L+PEFDNLYLDMNGILH CTHPNDD LS QLSER++ LGVF YIDRIVTHI RPRRVLYMAIDGVAPRAKMNQQRSRRFR+ KD A A
Sbjct:    1 MGVPKFYRWLSERYPKINQIVSDTSLIPEFDNLYLDMNGILHGCTHPNDDSLSKQLSERDVFLGVFHYIDRIVTHIVRPRRVLYMAIDGVAPRAKMNQQRSRRFRSAKDAAAA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S1XZW9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZW9_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.390e-54
Identity = 84/120 (70.00%), Postives = 104/120 (86.67%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEAKKLAESK 360
            MGVPKFYRW+SER+PKIN +ISD TLLPEFDN+YLDMNGILH CTHP+DD LS +  ERE++L +F+Y+DR++T I +PR+++YMA+DGVAPRAKMNQQRSRRFR+ KD   A  LAE+K
Sbjct:    1 MGVPKFYRWLSERFPKINTVISDLTLLPEFDNMYLDMNGILHGCTHPSDDELSKERPEREVVLALFKYLDRLITGIVKPRKIVYMALDGVAPRAKMNQQRSRRFRSAKDRMAA--LAEAK 118          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S2UCD1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD1_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.070e-54
Identity = 83/113 (73.45%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRWISERYPKINQ+I+D+ LLPEFD+LYLDMNGI+H CTHPN   +S  LSER++MLG+  Y+DRIVT I +P+  +YMAIDGVAPRAK+NQQRSRRFR+ KD+AEA
Sbjct:    1 MGVPKFYRWISERYPKINQVITDTALLPEFDHLYLDMNGIIHGCTHPNHLDVSDVLSERDMMLGIMHYLDRIVTQIVKPQVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAEA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S4DF97_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF97_HETAK)

HSP 1 Score: 172 bits (437), Expect = 1.320e-53
Identity = 81/113 (71.68%), Postives = 97/113 (85.84%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRW+SERYP INQ+ISD TLLPEFDNLYLDMNGILH C+HP D   ++ LS+R+IML +F YIDRIVT I RP+++L++A+DG APRAK+NQQRSRRFR+ KD  EA
Sbjct:    1 MGVPKFYRWLSERYPLINQLISDETLLPEFDNLYLDMNGILHNCSHPGDG--ASHLSDRDIMLSIFSYIDRIVTQIVRPKKILFLAVDGCAPRAKLNQQRSRRFRSAKDAREA 111          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A1Z5JKV0_FISSO (5'-3' exoribonuclease 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKV0_FISSO)

HSP 1 Score: 174 bits (440), Expect = 5.750e-48
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRW+SERYPKINQIISD+ LLPEFD+LYLDMNGI+H CTHP+   +S  LSER++MLG+  Y+DRI+T I +P+  +YMAIDGVAPRAK+NQQRSRRFR+ KD AEA
Sbjct:    1 MGVPKFYRWLSERYPKINQIISDNALLPEFDHLYLDMNGIIHGCTHPSHMDISDVLSERDMMLGIMHYLDRIITQIVKPKVSVYMAIDGVAPRAKLNQQRSRRFRSAKDTAEA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S4RC29_9STRA (5'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC29_9STRA)

HSP 1 Score: 174 bits (440), Expect = 5.750e-48
Identity = 81/113 (71.68%), Postives = 99/113 (87.61%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRWISERYPKINQ+I+DS LLPEFD+LYLDMNGI+H CTHP+   +S  LSER++M+G+  Y+DRI+T I +P+  +YMAIDGVAPRAK+NQQRSRRFR+ KD+AEA
Sbjct:    1 MGVPKFYRWISERYPKINQVITDSALLPEFDHLYLDMNGIIHGCTHPSHLDVSDVLSERDMMMGIMHYLDRIITQIVKPKVSVYMAIDGVAPRAKLNQQRSRRFRSAKDLAEA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A448ZS96_9STRA (5'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS96_9STRA)

HSP 1 Score: 174 bits (440), Expect = 5.750e-48
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRWISERY KIN+I+SDS LLPEFD+LYLDMNGI+H CTHP+   +S  +SER++MLG+  Y+DRI+T I +PR  +YMAIDGVAPRAK+NQQRSRRFR+ KDMAEA
Sbjct:    1 MGVPKFYRWISERYTKINEIVSDSALLPEFDHLYLDMNGIIHGCTHPSHMDISDVISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAEA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S4EG33_9STRA (5'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EG33_9STRA)

HSP 1 Score: 174 bits (440), Expect = 5.750e-48
Identity = 82/113 (72.57%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMAEA 339
            MGVPKFYRWISERY KIN+I+SDS LLPEFD+LYLDMNGI+H CTHP+   +S  +SER++MLG+  Y+DRI+T I +PR  +YMAIDGVAPRAK+NQQRSRRFR+ KDMAEA
Sbjct:    1 MGVPKFYRWISERYTKINEIVSDSALLPEFDHLYLDMNGIIHGCTHPSHMDISDVISERDMMLGIMHYLDRIITQIVKPRVSVYMAIDGVAPRAKLNQQRSRRFRSAKDMAEA 113          
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Match: A0A7S1C2Z7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C2Z7_9STRA)

HSP 1 Score: 167 bits (423), Expect = 5.900e-48
Identity = 81/111 (72.97%), Postives = 100/111 (90.09%), Query Frame = 1
Query:    1 MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDDGLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQRSRRFRARKDMA 333
            MGVPKFYRW+SERYP INQ ++D+TL+PEFDNLYLDMNGI+HT TH ND GLSA+++E+E+ML +F+YIDR+V  I +P ++LYMA+DGVAPRAKMNQQRSRRFRA +DMA
Sbjct:    1 MGVPKFYRWLSERYPLINQPLADNTLMPEFDNLYLDMNGIIHTATHGND-GLSAKITEKELMLSMFRYIDRMVK-IVKPTQLLYMAVDGVAPRAKMNQQRSRRFRAARDMA 109          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10186.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FME5_ECTSI7.060e-7092.505'-3' exoribonuclease 1 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4G8_9STRA9.560e-5884.96XRN 5'-3' exonuclease N-terminus-domain-containing... [more]
A0A7S1XZW9_9STRA1.390e-5470.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2UCD1_9STRA2.070e-5473.45Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4DF97_HETAK1.320e-5371.68Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Z5JKV0_FISSO5.750e-4872.575'-3' exoribonuclease 1 n=2 Tax=Fistulifera solari... [more]
A0A7S4RC29_9STRA5.750e-4871.685'-3' exoribonuclease 1 n=3 Tax=Ditylum brightwell... [more]
A0A448ZS96_9STRA5.750e-4872.575'-3' exoribonuclease 1 n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4EG33_9STRA5.750e-4872.575'-3' exoribonuclease 1 n=4 Tax=Pseudo-nitzschia a... [more]
A0A7S1C2Z7_9STRA5.900e-4872.97Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10186contigD-mesarthrocarpus_Contig10186:351..1335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FME5
PFAMsXRN_N
Model size360
Max annot lvl2759|Eukaryota
KEGG koko:K12618
KEGG Pathwayko03008,ko03018,map03008,map03018
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.16e-70
EggNOG OGsCOG5049@1|root,KOG2045@2759|Eukaryota
Description5'-3' exonuclease activity
Cds size360
COG categoryADL
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.5980644-CDS-D-mesarthrocarpus_Contig10186:350..5451680789161.5980644-CDS-D-mesarthrocarpus_Contig10186:350..545Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10186 351..545 -
1680789161.6081023-CDS-D-mesarthrocarpus_Contig10186:1170..13351680789161.6081023-CDS-D-mesarthrocarpus_Contig10186:1170..1335Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10186 1171..1335 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10186.1.1prot_D-mesarthrocarpus_Contig10186.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10186 351..1335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10186.1.1

>prot_D-mesarthrocarpus_Contig10186.1.1 ID=prot_D-mesarthrocarpus_Contig10186.1.1|Name=mRNA_D-mesarthrocarpus_Contig10186.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=120bp
MGVPKFYRWISERYPKINQIISDSTLLPEFDNLYLDMNGILHTCTHPNDD
GLSAQLSEREIMLGVFQYIDRIVTHIARPRRVLYMAIDGVAPRAKMNQQR
SRRFRARKDMAEAKKLAESK
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mRNA from alignment at D-mesarthrocarpus_Contig10186:351..1335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10186.1.1 ID=mRNA_D-mesarthrocarpus_Contig10186.1.1|Name=mRNA_D-mesarthrocarpus_Contig10186.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=985bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10186:351..1335- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTGTCCCCAAGTTTTACCGATGGATATCGGAGCGGTACCCAAAGAT TAACCAGATAATCTCCGACTCTACCCTCCTGCCGGAGTTCGACAACCTCT ACCTCGACATGAACGGGATCTTGCACACGTGCACACACCCAAACGATGAT GGACTTAGCGCACAGGTGAGAGTAGGGTTAGGGTTGGGGCTAAGGGCTTC GGTTTGGTTTGACGGCTGGTCCCGCCGTTTATACGTTGATGAAGTAGACA AAGCACCTTGGCAAGAAAAAGAAACCCCGGGCACGACAAAGAAAAGCACC TTGTAACCCTAACCCTAAACCCTGGCCGGCAGAAAGTCCAAGGGGCAAGA CCAGGGGGCAGGTAGCACTTTGTGCAGAACAGCACAGTGGAGACATGCCG GTGTGCTTTGGCCTACGCAACCCGTTCTTGCGAGCAGCACCCCTTTTGCT GTTTGTTGTCATATCGCCCCCTCCACACTCTCCATTGTAACCCTCCGTCG TTACATACACCCTTCCGTCGTTACCCTCTGGTAGGGTTGGGGTTACCGCG CGTCTTTGCTCTCGTGAAACCTGTTATTTGTACCCCGTGTTCATGTCCGC GTGCACGCAGGGGCACACCGCGCGGTGTGCCCCTCCCTGCGCTTATGTGC GCCCAACAGCCGCACGCGCGCATGCTCATCACGCTGCGCTGCACTGCTGC CGTACACGTGTTTGCACTGCTGCCGTACACATGTTTGCTCCACCGGTGGC ACGGGGGTCCCCCTTCGGCCTTGAAAAAAAAATAATAAAGCTGAGCGAGC GGGAGATAATGCTGGGGGTCTTCCAGTATATCGACCGGATCGTCACCCAC ATCGCACGCCCCCGCCGGGTTCTCTACATGGCCATCGACGGGGTGGCGCC GAGGGCAAAGATGAACCAGCAGCGCTCCAGGAGGTTCCGGGCGAGGAAGG ACATGGCAGAGGCCAAGAAGCTGGCCGAGTCCAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10186:351..1335-

>mRNA_D-mesarthrocarpus_Contig10186.1.1 ID=mRNA_D-mesarthrocarpus_Contig10186.1.1|Name=mRNA_D-mesarthrocarpus_Contig10186.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=360bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10186:351..1335- (Discosporangium mesarthrocarpum MT17_79)
ATGGGTGTCCCCAAGTTTTACCGATGGATATCGGAGCGGTACCCAAAGAT
TAACCAGATAATCTCCGACTCTACCCTCCTGCCGGAGTTCGACAACCTCT
ACCTCGACATGAACGGGATCTTGCACACGTGCACACACCCAAACGATGAT
GGACTTAGCGCACAGCTGAGCGAGCGGGAGATAATGCTGGGGGTCTTCCA
GTATATCGACCGGATCGTCACCCACATCGCACGCCCCCGCCGGGTTCTCT
ACATGGCCATCGACGGGGTGGCGCCGAGGGCAAAGATGAACCAGCAGCGC
TCCAGGAGGTTCCGGGCGAGGAAGGACATGGCAGAGGCCAAGAAGCTGGC
CGAGTCCAAG
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