prot_D-mesarthrocarpus_Contig9240.4.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig9240.4.1
Unique Nameprot_D-mesarthrocarpus_Contig9240.4.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length137
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 4.060e-66
Identity = 103/138 (74.64%), Postives = 118/138 (85.51%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRG-DNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTCT 137
            MD RF  +V LPGDDVTE  TRTT +LRLG GL+Q   D V+ATRAG+LRYRPPC+YWVESNGRRY AR EDQVLGI++DR  +SYKVNIFGS +ALLGMLEF+GASKRSKPNL+ G+LVFCRV + +KDMETELTCT
Sbjct:    1 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCT 138          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 5.040e-66
Identity = 105/138 (76.09%), Postives = 118/138 (85.51%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRG-DNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTCT 137
            MD RF  +V LPGDDVTE  TRTT +LRLG GL+Q   D VLATRAG+LRYRPPCTYWVESNGRRY AR EDQVLGI++DR  +SYKVNIFGS +ALLGMLEF+GASKRSKPNL+ G+LVFCRV + +KDMETELTCT
Sbjct:   78 MDPRFKATVVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCT 215          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.290e-44
Identity = 81/138 (58.70%), Postives = 100/138 (72.46%), Query Frame = 0
Query:    9 VTLPGDDVTEIVTRTTTNLRLGAGLIQRGDNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADK----------DMETELTC 136
            V LPGD VTE VT     L LG GL QRGD+V ATRAG LR+ PP T+WVE N RRYI + ED VLGII+DR+G+ Y+VNIFG ++ALL +L F+GA++R+KPNLK GA+V+CRV SA+           DME EL+C
Sbjct:   63 VVLPGDRVTEHVTAAALKLTLGTGLAQRGDDVFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGAIVYCRVASANNASAPRFPEHCDMEPELSC 200          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.570e-42
Identity = 73/136 (53.68%), Postives = 96/136 (70.59%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P   LPGDDVT  +  T   LRLGAGL+  G  VLAT AG+LRYRPP  YW++ N +RYI   +D V+G+I DR  E Y+++I  S  A LGML F+GASKR++PNL+ G+LV+CRV SA++++E  LTC
Sbjct:   13 IDLSFKPLSVLPGDDVTTSIANTNQKLRLGAGLVASGTQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTC 148          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.840e-42
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P   LPGDDVT+ +      LRLGAGL+  G  V  T AG+LRYRPP  YW++ N +RY+A  +D V+G++ DR  E Y+++I  S+ A LGML F+GASKR++PNL+ G+LV+CRV+S +KD+E  LTC
Sbjct:   13 IDLAFTPVTVLPGDDVTKHIANLGQKLRLGAGLVANGSTVSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTC 148          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A8K1CT22_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CT22_PYTOL)

HSP 1 Score: 148 bits (373), Expect = 1.260e-41
Identity = 72/137 (52.55%), Postives = 101/137 (73.72%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGL-IQRGDNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P+V LPGDDVTEI+T+T+ N+RLGAGL +  GD ++ T AG+LRYRPP  YWVE + +RY    +D V+G++ DR  E Y+VNI  ++S  LG L F+GA+KR++P+L+ G+LV+ RV+  + DME ELTC
Sbjct:   30 VDFLFSPTVVLPGDDVTEILTKTSKNVRLGAGLRLLPGDRIVCTNAGVLRYRPPNRYWVEFDHKRYNVAVDDGVIGVVTDRNAEFYRVNIGAASSVTLGCLAFDGATKRNRPSLRVGSLVYARVLKTNPDMEPELTC 166          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 147 bits (371), Expect = 1.530e-41
Identity = 69/136 (50.74%), Postives = 99/136 (72.79%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDNVLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P+  LPGDDVT+ +   +  LRLGAGLI  G+ + +T AG+LRYRPP  YW++ N +RY+   +D V+G++ DR  E Y+++I  S+ A LGML F+GASKR++PNL+ GALV+CRV+S ++D+E  LTC
Sbjct:   13 IDLAFKPATVLPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTC 148          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.230e-41
Identity = 73/137 (53.28%), Postives = 98/137 (71.53%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDN-VLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P   LPGDDVT+ +T  T  LRLGAGLI    N V+ T AG+LRYRPP  YW++ N +RY+   +D V+G+I DR  E Y+V+I G+A A LGML F+GASKR++PNL+ G+L++CRV+ A KD+E  +TC
Sbjct:   13 VDLAFTPRTCLPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTC 149          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A485LHG2_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHG2_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.260e-40
Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDN-VLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P   LPGDDVT+ +T  T  LRLGAGL+   +N VL T+AG+LRYRPP  YW++ N +RY+   +D V+G+I DR  E Y+V+I  S+ A LGML F+GASKR++PNL+ G+LV+CRV+ A KD++  +TC
Sbjct:   13 IDLAFTPRTCLPGDDVTQHITHVTQKLRLGAGLVADNNNRVLCTQAGVLRYRPPNRYWLDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVVRASKDLDPCVTC 149          
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Match: A0A024TL32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TL32_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.500e-40
Identity = 72/137 (52.55%), Postives = 97/137 (70.80%), Query Frame = 0
Query:    1 MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDN-VLATRAGMLRYRPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGMLEFNGASKRSKPNLKNGALVFCRVMSADKDMETELTC 136
            +D  F P   LPGDD+T+ +T  T  LRLGAGL+   DN V++T AG+LRYRPP  YW++ N +RY    ED V+G+I DR  E Y+V+I  S+ A LGML F+GASKR++PNL+ G LV+CRV+ A KD++  +TC
Sbjct:   13 IDLAFKPRTCLPGDDITQHITNVTQKLRLGAGLVATCDNRVVSTNAGVLRYRPPNRYWLDFNHKRYKPALEDGVVGMIVDRNAEFYRVDIGSSSYATLGMLAFDGASKRNRPNLQPGTLVYCRVVRATKDLDACVTC 149          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9240.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG41_ECTSI4.060e-6674.64RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5J8L0_9PHAE5.040e-6676.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YY15_9STRA1.290e-4458.70Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
A0A1W0A9P5_9STRA2.570e-4253.68Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
A0A1V9Y536_9STRA3.840e-4251.47Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A8K1CT22_PYTOL1.260e-4152.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
T0R8U7_SAPDV1.530e-4150.74KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
A0A6G0XI83_9STRA2.230e-4153.28Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A485LHG2_9STRA1.260e-4052.55Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A024TL32_9STRA2.500e-4052.55Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.100coord: 5..66
e-value: 3.3E-11
score: 45.2
NoneNo IPR availablePANTHERPTHR21321:SF1EXOSOME COMPLEX COMPONENT RRP40coord: 5..137
NoneNo IPR availableSUPERFAMILY110324Ribosomal L27 protein-likecoord: 4..62
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 68..137
e-value: 7.9E-26
score: 91.6
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 64..136
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 5..137

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9240contigD-mesarthrocarpus_Contig9240:3514..4838 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9240.4.1mRNA_D-mesarthrocarpus_Contig9240.4.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig9240 3514..4838 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig9240.4.1 ID=prot_D-mesarthrocarpus_Contig9240.4.1|Name=mRNA_D-mesarthrocarpus_Contig9240.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=137bp
MDTRFVPSVTLPGDDVTEIVTRTTTNLRLGAGLIQRGDNVLATRAGMLRY
RPPCTYWVESNGRRYIARNEDQVLGIIDDRAGESYKVNIFGSASALLGML
EFNGASKRSKPNLKNGALVFCRVMSADKDMETELTCT
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4