prot_D-mesarthrocarpus_Contig9226.1.1 (polypeptide) Discosporangium mesarthrocarpum MT17_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_D-mesarthrocarpus_Contig9226.1.1
Unique Nameprot_D-mesarthrocarpus_Contig9226.1.1
Typepolypeptide
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Sequence length77
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A6H5JST3_9PHAE (RNA_pol_L_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JST3_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.690e-26
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQV 62
            MQLL D+QVRFAGY+QPHPLENK+H+KVQTNGDNTPVDALS A EDLSQE++ L  VF+EQV
Sbjct:   48 MQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQV 109          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: D7G4D0_ECTSI (RNA polymerase II core subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 9.660e-26
Identity = 49/62 (79.03%), Postives = 56/62 (90.32%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQV 62
            MQLL D+QVRFAGY+QPHPLENK+H+KVQTNGDNTPVDALS A EDLSQE++ L  VF+EQV
Sbjct:   95 MQLLADRQVRFAGYMQPHPLENKIHIKVQTNGDNTPVDALSAATEDLSQEMEGLREVFQEQV 156          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A836CIX8_9STRA (Putative DNA-directed RNA polymerase II 13.6 kDa polypeptide n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIX8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.680e-22
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQVMSFQREDEPPHY 74
            MQLLQD+QVRFAGY+ PHPLEN + VKVQTNG+ TP+DALSTAIEDL+ EVD L + F E V++ +R  E   Y
Sbjct:   48 MQLLQDRQVRFAGYLMPHPLENIMRVKVQTNGEVTPMDALSTAIEDLTSEVDNLTQRFAEGVLACKRLQESRQY 121          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A6G0X3S2_9STRA (RNA_pol_L_2 domain-containing protein n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A6G0X3S2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 6.560e-14
Identity = 33/59 (55.93%), Postives = 43/59 (72.88%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFR 59
            MQLL+DK V FAGY  PHPL N + +++QTN D+TP+ ALS  ++DLS E D L  +FR
Sbjct:   48 MQLLRDKNVTFAGYQHPHPLVNDIKIRIQTNNDSTPIQALSNCLDDLSIEFDELALLFR 106          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: K0SS38_THAOC (RNA_pol_L_2 domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SS38_THAOC)

HSP 1 Score: 69.7 bits (169), Expect = 1.450e-13
Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNT-PVDALSTAIEDLSQEVDVLMRVFREQVMSFQREDE 70
            MQLL+D QV+FAGY+ PHPL N++H+KVQT+     P ++LS AIEDLS E D L+    + +  ++RE++
Sbjct:   49 MQLLRDPQVKFAGYMHPHPLVNRIHLKVQTSTSQVAPTESLSAAIEDLSNETDHLITSVTDAIEKWKREND 119          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A7R9WNF7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WNF7_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.620e-13
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNT-PVDALSTAIEDLSQEVDVLMRVFREQVMSFQREDE 70
            MQLL+D  VRFAGY  PHPL + +++K+QTN     PV+ LS+AIEDLS E D L   F+E + +++RE++
Sbjct:   50 MQLLRDPSVRFAGYYHPHPLVHFLNMKIQTNNSTVAPVEVLSSAIEDLSNETDHLTSQFQEAIDTWKREND 120          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A1I8A8U0_9BILA (RNA_pol_L_2 domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8A8U0_9BILA)

HSP 1 Score: 65.9 bits (159), Expect = 3.870e-12
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 0
Query:    2 QLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQVMSFQR 67
            QLL+D QV FAGY  PHPL++K+ +++QT  D TP DAL++AI DL  E+ +    FR+ V   +R
Sbjct:   49 QLLKDPQVLFAGYRNPHPLDHKIVIRIQTTSDTTPADALTSAITDLLAELSLFEERFRDAVTDKER 114          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A024UNE3_9STRA (RNA_pol_L_2 domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024UNE3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 4.260e-12
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFR 59
            MQLL+DK V FAGY  PHPL N V +++QTN +++P+ AL   ++DLS E D L  +FR
Sbjct:   48 MQLLRDKNVTFAGYQHPHPLVNDVKIRIQTNNNSSPIQALGNCLDDLSIEFDELALLFR 106          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A1D2NJL6_ORCCI (DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NJL6_ORCCI)

HSP 1 Score: 65.5 bits (158), Expect = 5.750e-12
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    2 QLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQVMSFQ 66
            QLL+D  V FAGY QPHPLE+K+ ++VQT  D TP DA+  AI DL  E+ +L   FRE +   Q
Sbjct:   49 QLLKDPHVLFAGYKQPHPLEHKIIIRVQTTADYTPQDAMRNAIMDLISELSLLEERFREAIKEKQ 113          
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Match: A0A226DPL2_FOLCA (DNA-directed RNA polymerase II subunit RPB11 n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226DPL2_FOLCA)

HSP 1 Score: 65.5 bits (158), Expect = 5.750e-12
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 0
Query:    1 MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQEVDVLMRVFREQVMSFQ 66
            MQLL+D  V FAGY QPHPL+ K+ ++VQT  D TP DAL  AI DL  E+ +L   FR+ +   Q
Sbjct:   48 MQLLKDPHVLFAGYKQPHPLDPKILIRVQTTADYTPQDALKNAITDLISELSLLEERFRDAIKEKQ 113          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig9226.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JST3_9PHAE2.690e-2679.03RNA_pol_L_2 domain-containing protein n=1 Tax=Ecto... [more]
D7G4D0_ECTSI9.660e-2679.03RNA polymerase II core subunit n=1 Tax=Ectocarpus ... [more]
A0A836CIX8_9STRA4.680e-2264.86Putative DNA-directed RNA polymerase II 13.6 kDa p... [more]
A0A6G0X3S2_9STRA6.560e-1455.93RNA_pol_L_2 domain-containing protein n=2 Tax=Apha... [more]
K0SS38_THAOC1.450e-1349.30RNA_pol_L_2 domain-containing protein n=1 Tax=Thal... [more]
A0A7R9WNF7_9STRA4.620e-1350.70Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A1I8A8U0_9BILA3.870e-1248.48RNA_pol_L_2 domain-containing protein n=1 Tax=Stei... [more]
A0A024UNE3_9STRA4.260e-1252.54RNA_pol_L_2 domain-containing protein n=7 Tax=Apha... [more]
A0A1D2NJL6_ORCCI5.750e-1252.31DNA-directed RNA polymerase II subunit RPB11 n=1 T... [more]
A0A226DPL2_FOLCA5.750e-1251.52DNA-directed RNA polymerase II subunit RPB11 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availablePANTHERPTHR13946:SF16DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11coord: 1..66
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 1..66
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 2..55
e-value: 6.0E-17
score: 61.2
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 1..71
e-value: 9.7E-21
score: 75.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 1..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig9226contigD-mesarthrocarpus_Contig9226:214..1655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig9226.1.1mRNA_D-mesarthrocarpus_Contig9226.1.1Discosporangium mesarthrocarpum MT17_79mRNAD-mesarthrocarpus_Contig9226 99..2585 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_D-mesarthrocarpus_Contig9226.1.1 ID=prot_D-mesarthrocarpus_Contig9226.1.1|Name=mRNA_D-mesarthrocarpus_Contig9226.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=77bp
MQLLQDKQVRFAGYIQPHPLENKVHVKVQTNGDNTPVDALSTAIEDLSQE
VDVLMRVFREQVMSFQREDEPPHYPP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR036603RBP11-like