mRNA_D-mesarthrocarpus_Contig92.12.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig92.12.1
Unique NamemRNA_D-mesarthrocarpus_Contig92.12.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 6.890e-33
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI DIRDFLQKARRRDAKSVKIK N +  STKFKIRCSRYLYTLCVTD+EKA+KLTQSLPPGL KK+L
Sbjct:    2 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 71
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BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR)

HSP 1 Score: 108 bits (270), Expect = 1.440e-29
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI+DIRDFLQKARR+DA+SVKIK   SDK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPGLQ+K +
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
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BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE)

HSP 1 Score: 108 bits (270), Expect = 2.450e-29
Identity = 56/70 (80.00%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI+DIRDFLQKARR+DA+SVKIK   SDK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPGLQ+K +
Sbjct:   21 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
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BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: A0A0P1ACU3_PLAHL (60s ribosomal protein l38 n=10 Tax=Oomycota TaxID=4762 RepID=A0A0P1ACU3_PLAHL)

HSP 1 Score: 106 bits (264), Expect = 1.700e-28
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQ 201
            PKQI+DIRDFLQKARR+DA+SVKIK   SDK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPGLQ
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQ 65
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC)

HSP 1 Score: 105 bits (261), Expect = 3.400e-28
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI+DIRDFLQKARR+DA+SVKIK  P     KFKIRCS+YLYTLCVTD EKA+KLTQSLPPGLQ+K +
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIKKTPQ--VVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.400e-28
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI+DIRDFLQKARR DAK VKIK    D  TKFKIRCSR+LYTLCVTD EKA+KLTQSLPPGLQ+K +
Sbjct:    2 PKQITDIRDFLQKARRSDAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
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BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: H3G589_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G589_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 5.850e-28
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 QPKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPG 195
            QPKQI+DIRDFLQKARR+DA+SVKIK   SDK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPG
Sbjct:    1 QPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPG 63
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: M4BFU6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU6_HYAAE)

HSP 1 Score: 104 bits (259), Expect = 7.870e-28
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQ 201
            PKQI+DIRDFLQKARR+DA+SVKIK   SDK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPG Q
Sbjct:    2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGAQ 65
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA)

HSP 1 Score: 103 bits (258), Expect = 9.760e-28
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQKKKL 213
            PKQI DIRDFLQKARR+DAKSVKIK   + + TKFKIRCSRYLYTLCV D++KA+KLTQSLPPGLQ+K +
Sbjct:    2 PKQIHDIRDFLQKARRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Match: F0VZP1_9STRA (Ribosomal protein L38 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZP1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.280e-27
Identity = 53/66 (80.30%), Postives = 60/66 (90.91%), Query Frame = 1 
Query:    4 PKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVTDQEKAEKLTQSLPPGLQ 201
            PK+I+DIRDFLQKARR+DA+SVKIK   +DK  KFKIRCS+YLYTLCVTD EKA+KLTQSLPPGLQ
Sbjct:    2 PKEITDIRDFLQKARRKDARSVKIK--KTDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig92.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM71_ECTSI6.890e-3385.7160S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID... [more]
W2IQQ0_PHYPR1.440e-2980.0060S ribosomal protein L38 n=16 Tax=Peronosporaceae... [more]
M4BFU5_HYAAE2.450e-2980.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A0P1ACU3_PLAHL1.700e-2883.3360s ribosomal protein l38 n=10 Tax=Oomycota TaxID=... [more]
A0A067CFE6_SAPPC3.400e-2877.1460S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4... [more]
A0A1E7ETU4_9STRA3.400e-2878.57Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID... [more]
H3G589_PHYRM5.850e-2883.08Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
M4BFU6_HYAAE7.870e-2881.82Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A836CJ21_9STRA9.760e-2877.14Ribosomal protein L38 n=1 Tax=Tribonema minus TaxI... [more]
F0VZP1_9STRA1.280e-2780.30Ribosomal protein L38 putative n=1 Tax=Albugo laib... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig92contigD-mesarthrocarpus_Contig92:40809..43026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FM71
Preferred nameRPL38
PFAMsRibosomal_L38e
Model size228
Max annot lvl2759|Eukaryota
KEGG koko:K02923
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000028,GO:0000184,GO:0000956,GO:0001501,GO:0001503,GO:0002181,GO:0003008,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007423,GO:0007498,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009887,GO:0009888,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033291,GO:0033365,GO:0034248,GO:0034463,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042254,GO:0042255,GO:0042273,GO:0042274,GO:0042471,GO:0042474,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043583,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048318,GO:0048513,GO:0048519,GO:0048562,GO:0048568,GO:0048598,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050877,GO:0050954,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0070925,GO:0070972,GO:0070992,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0090596,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904,GO:2000112
Exons3
Evalue1.13e-33
EggNOG OGsKOG3499@1|root,KOG3499@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L38e
Ec32 orthologEc-16_004840.1
Descriptionstructural constituent of ribosome
Cds size228
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791074.243147-CDS-D-mesarthrocarpus_Contig92:40808..409101680791074.243147-CDS-D-mesarthrocarpus_Contig92:40808..40910Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig92 40809..40910 -
1680791074.2719147-CDS-D-mesarthrocarpus_Contig92:41332..414081680791074.2719147-CDS-D-mesarthrocarpus_Contig92:41332..41408Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig92 41333..41408 -
1680791074.282283-CDS-D-mesarthrocarpus_Contig92:42976..430261680791074.282283-CDS-D-mesarthrocarpus_Contig92:42976..43026Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig92 42977..43026 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig92.12.1prot_D-mesarthrocarpus_Contig92.12.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig92 40809..43026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig92.12.1

>prot_D-mesarthrocarpus_Contig92.12.1 ID=prot_D-mesarthrocarpus_Contig92.12.1|Name=mRNA_D-mesarthrocarpus_Contig92.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=76bp
QPKQISDIRDFLQKARRRDAKSVKIKINPSDKSTKFKIRCSRYLYTLCVT
DQEKAEKLTQSLPPGLQKKKLGPFR*
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mRNA from alignment at D-mesarthrocarpus_Contig92:40809..43026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig92.12.1 ID=mRNA_D-mesarthrocarpus_Contig92.12.1|Name=mRNA_D-mesarthrocarpus_Contig92.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=2218bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig92:40809..43026- (Discosporangium mesarthrocarpum MT17_79)
CAGCCTAAGCAAATCAGCGACATCAGGGACTTCCTGCAGAAGGCTCGCCG
GTGAGTCCGTGTACCCTTGAACCCATGTATAGGATAATTTGCTTCACCTT
ATCTAATGAGTAATTCCTGAAAGCAAGGAGTTGCCTCTTCCATGCGCTGG
AGGGGGTGTGAAGGACGCACGGAGCTGGTTCATGGGGGGCTTCGTGCACG
GATACATGGATAATATTGTGGGGCAGGGTGTGGGGTATGATATACGATAA
AAAAAGCTCTCTAGTGGTTATACTGACACATGAGGAGGCTCGCAGTGTGG
ATGGAGCAAGGTACAGTGCGGCTCCGGCCATTGCAAAACCCCCGTTTATC
GTCACTGGAAGACCCATAATGAGGCTATAGAGCCGACCCTTTTAACCAGT
GGTTGTGTGATGGTGACACCCTTTCGGATGGATGAGTTCTTTCATCACTA
TACCGATACATATTCTCTTCAAAATCTAAAGAGTATTTAAGGACAATGAC
GCCCGGACATAAGGTTTCAAGACAAGTCATTCGCGAGGTTGTTTTTTGTC
GAAATTACCGCTTACGATCGAGCCCACTGAGACATGCAATTAAGCCGTGC
TGATCAAAGGGCAGAGTTGACGCTGAACTTTGAGTCTTATTGCATGAGTA
CACGATAAGACGAAGTGTAGTAGGAGAGATATTAGTTGAAAAAGGCTGAT
TGTTAATAGGACTAGGCCCTCACCCTTGTCGTAAAGACGCTTGATAATCC
TCTGGGTTTAGGAAGGTATGGAAGTACTAATTATAAAGGTAATCTGTGCC
GTCTGTCTTGGGTTAACTGTTATTTTCGTACCGCTGCAACCCAAGACCAT
ACTGTTAGGAACGTTATTTGAGACATGATTGAACGTCCTTGATAAAGTTT
TCACCGTAACTGGTATTACATTGGGTCAAACAAAATGTTGAAAACATAAG
ACACCCCCCTGTTGTATGGTCATCTGTTGTTGAATGCACATGAGGTTCAG
CAAATGCCATCAATCTGTTCTATTTGTGCAAGAATGACAAAATAATCTTT
GGAAATTTTGTTTTGCTCCGTTTCCTGGAACGAGGAAGGACAATGATAGG
GATATGGCAAGTGTTACGGAGGGTATGGAAGTTAAGACTGGGTACGTTGC
TCTGCTCAGATATCAATTGGTCAGTTACTATGTAAAACATTCATTTCTTT
GTGATTACGTGGATTCACGTGTGAAATAATTAATGGAACATTGCTAATGG
TAGAAATTTGATGAGTGCATGAGCGGTAGCTGGGTATTGAGTATACCACC
TCTCCCCATGAAAGGAATAACCATCTTGTCATTGTGGACCTAGTTTTGAT
GAACTTGAAAGTTGTAGGAAATGGTGGCAGATGATGTCATGGTGGCTCTA
TTTGGAAGAACATGTACTCGCTTTGACCAATAGATCCCATTTTATTTCAA
CCAAGAACTTTACGACAGTGTGATAAAATGTCATGTGGGGACAAAGCTGT
CCTCCCATGTTGTTATTGTGCCTGGTTATTATCCCTCCTATTTGTCCATG
TTACGGCCGCTGTCCTCCCATGTTATTATTGTACCTTATTATTATCCCTC
CTATTTTCCATTTTACAGCCGCGATGCTAAGTCTGTGAAGATCAAGATCA
ACCCCAGCGACAAGTCCACCAAGTTCAAGATCCGCTGCTCTAGGGTAAGA
GGTTTTGTGTTTTCATGGTTTCTGTGTTAACAGGGGTAGAAATGGTAAAA
AAAAAAATAGAGCAGTATGTTGGGTCATCAGGAAATCGTATCTTGGACGA
TTATCTGCACCAGGTTATTGATACTTGCGCCCATGAAAAGTGGGTATCCT
TGGTTGAGAGGAGTGATCTGGATGTTCCAACTGTTTATCTCTACTTGTTA
ATCTATGTATCTGAAACCCTCGTACATACTAGTTAAACATAGGATGCACA
ACTGTACGTGTAGGCCTGTGCCAGCTCTCATGGTAGGGGTGTGCAATGAA
TGTGTTATTTCATTTTTTGCTAAAGTGCATACCCGTGTAGATCTTGCTGA
AGTTGATATGAGCATGTATCCCTCCTCACTGTCCTTTCCTGATGCACCCA
TCCCCCTTCCTGCCAGTACCTGTACACACTGTGTGTCACTGACCAGGAGA
AGGCTGAGAAGCTCACACAGTCCTTGCCTCCAGGCCTCCAGAAGAAGAAA
TTGGGCCCTTTTAGATGA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig92:40809..43026-

>mRNA_D-mesarthrocarpus_Contig92.12.1 ID=mRNA_D-mesarthrocarpus_Contig92.12.1|Name=mRNA_D-mesarthrocarpus_Contig92.12.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=228bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig92:40809..43026- (Discosporangium mesarthrocarpum MT17_79)
CAGCCTAAGCAAATCAGCGACATCAGGGACTTCCTGCAGAAGGCTCGCCG
CCGCGATGCTAAGTCTGTGAAGATCAAGATCAACCCCAGCGACAAGTCCA
CCAAGTTCAAGATCCGCTGCTCTAGGTACCTGTACACACTGTGTGTCACT
GACCAGGAGAAGGCTGAGAAGCTCACACAGTCCTTGCCTCCAGGCCTCCA
GAAGAAGAAATTGGGCCCTTTTAGATGA
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