mRNA_D-mesarthrocarpus_Contig1018.4.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1018.4.1
Unique NamemRNA_D-mesarthrocarpus_Contig1018.4.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1018.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1018contigD-mesarthrocarpus_Contig1018:5586..7142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size613
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionHeat shock protein DnaJ, cysteine-rich domain
Ec32 orthologEc-08_004890.1
Cds size477
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1018.4.1prot_D-mesarthrocarpus_Contig1018.4.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1018 5609..7029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.2757359-UTR-D-mesarthrocarpus_Contig1018:5585..56081680789161.2757359-UTR-D-mesarthrocarpus_Contig1018:5585..5608Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1018 5586..5608 -
1680789161.3331783-UTR-D-mesarthrocarpus_Contig1018:7029..71421680789161.3331783-UTR-D-mesarthrocarpus_Contig1018:7029..7142Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1018 7030..7142 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789161.2881837-CDS-D-mesarthrocarpus_Contig1018:5608..57581680789161.2881837-CDS-D-mesarthrocarpus_Contig1018:5608..5758Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 5609..5758 -
1680789161.2996879-CDS-D-mesarthrocarpus_Contig1018:6203..63091680789161.2996879-CDS-D-mesarthrocarpus_Contig1018:6203..6309Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 6204..6309 -
1680789161.3074164-CDS-D-mesarthrocarpus_Contig1018:6449..66311680789161.3074164-CDS-D-mesarthrocarpus_Contig1018:6449..6631Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 6450..6631 -
1680789161.3154247-CDS-D-mesarthrocarpus_Contig1018:6990..70291680789161.3154247-CDS-D-mesarthrocarpus_Contig1018:6990..7029Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1018 6991..7029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1018.4.1

>prot_D-mesarthrocarpus_Contig1018.4.1 ID=prot_D-mesarthrocarpus_Contig1018.4.1|Name=mRNA_D-mesarthrocarpus_Contig1018.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=159bp
MGKKPSSSSEDGEGYASAMGDGRERKEKVESLEKLFATVTPEVPRIEVQS
EGLGRGTLPRKHRLQMKQQNLDLQWRMTEGGSVRSVCCRECAGTGLRECR
FCAGTGLLKVGEDLMTMTEHGGRIPACPVCQRGGEEKCKRCNGSGRLAGW
LFNLKRQA*
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mRNA from alignment at D-mesarthrocarpus_Contig1018:5586..7142-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1018.4.1 ID=mRNA_D-mesarthrocarpus_Contig1018.4.1|Name=mRNA_D-mesarthrocarpus_Contig1018.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1557bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:5586..7142- (Discosporangium mesarthrocarpum MT17_79)
CCGAGACGTTGGGGAGGAAGTCTCTCGCGTTTACACCAGCAGCGCCAAGG
GTGGCAGGATCATTCAGACAGTCCCTTCAGGGGCCTCCGAGATTTACTCG
GGCACGTACTCGGATGGGGAAGAAACCCTCCTCATCGAGTGAAGACGGCG
AGGTGGGTTCCTTTCCTTATGTCTGTGTCGGCGTGTGTGGGCCTGGGTGG
AGTGCACGTCTTGCAAGGCCACGCATTTGGGCTTGACCAAAGGAATGAAC
GAAGTGCAATCCGAGGTGATGGGCAGAGCGCTATGGCTGAGTTTCCTTAA
CTGTGTATGGGGCCAAGGCAGACTCCCTCCAATCGTGTCTCGGATATCCT
GAAGATCTACGCTGAAACTGAACACCTCATCGACACTGGTGTTCCCTCTA
CACGCGAGGAACCGCCTCTCTCAGTTCCATCAGCCGCCTCTCATCCCTCA
CCTTCCTTTTTTGCCCTACACCCGGCATGAAATTCAAACCAAACGGACGC
TGACGGCTAAGGGCTATGCATCAGCAATGGGAGATGGCCGCGAGAGAAAG
GAGAAGGTCGAATCGCTGGAGAAGCTCTTCGCGACAGTGACCCCCGAAGT
CCCAAGGATTGAAGTTCAGAGTGAAGGTCTCGGGCGGGGCACACTTCCTC
GCAAGCACAGGCTGCAGATGAAGCAGCAGAACCTTGACCTCCAGTGAGAG
AAAAGGAAAAATGGGGAGAAGAATCTGCTAACCAGGAAGGTGGCGGAAAA
GCTCATGTTATTCCCTGGTCCTTATCATCACTGACCCTCAACCCTACCCT
TAACCCCCGGACTGCTGGCGGAACGTGCCGCAGGTGGAGAATGACTGAGG
GGGGAAGCGTAAGATCAGTGTGTTGCCGGGAGTGTGCTGGGACGGGGCTG
AGAGAGTGCAGGTTTTGCGCAGGCACAGGGCTATTGAAGGCGAGAAACGA
GGAAGACATCTAGAAAAACAAGGGAGAAGGAGAGAGTTGTTTTTGAACAT
CTCCTTGACAATCTCTTTGACAAACTCATGAGACCTTGGACCCCCTTCTC
CTGCATTGGATCACATCTTCAGCGGCCGCAGCTTGACATGCAGTAGCACG
TACTATGTATTCCCTATTACCGATTTGAAATAGGGTAATACAGTCAAACG
CACGCGCCCATTTATATGTACGTAGGGAACTAGTACTCGGAAACCGAGGC
CCCTTGAAGTATGTCCAGTAATCGATGTGCTTCTCAGTATGTATGTACAT
GTGGTGCTTAAAAGTCTGCAGCACCCAGTTCAGTATCTGATGTCGAAATG
TTCGGCGCTTCTTCCCCTGTTTGTGATTATCATACCTTCACGTCGCCCCA
CCCCCCCCCTCCCTGCTGCACCGGACTTGAGAAGGTTGGAGAGGACCTCA
TGACGATGACGGAACATGGGGGCCGAATCCCTGCCTGTCCCGTCTGCCAG
AGGGGTGGGGAGGAGAAATGTAAACGCTGCAATGGATCCGGGAGACTGGC
AGGCTGGCTCTTTAACCTTAAGAGGCAGGCCTGAGGATCAAGAGTGAAGC
CCTGGGT
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1018:5586..7142-

>mRNA_D-mesarthrocarpus_Contig1018.4.1 ID=mRNA_D-mesarthrocarpus_Contig1018.4.1|Name=mRNA_D-mesarthrocarpus_Contig1018.4.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=477bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1018:5586..7142- (Discosporangium mesarthrocarpum MT17_79)
ATGGGGAAGAAACCCTCCTCATCGAGTGAAGACGGCGAGGGCTATGCATC
AGCAATGGGAGATGGCCGCGAGAGAAAGGAGAAGGTCGAATCGCTGGAGA
AGCTCTTCGCGACAGTGACCCCCGAAGTCCCAAGGATTGAAGTTCAGAGT
GAAGGTCTCGGGCGGGGCACACTTCCTCGCAAGCACAGGCTGCAGATGAA
GCAGCAGAACCTTGACCTCCAGTGGAGAATGACTGAGGGGGGAAGCGTAA
GATCAGTGTGTTGCCGGGAGTGTGCTGGGACGGGGCTGAGAGAGTGCAGG
TTTTGCGCAGGCACAGGGCTATTGAAGGTTGGAGAGGACCTCATGACGAT
GACGGAACATGGGGGCCGAATCCCTGCCTGTCCCGTCTGCCAGAGGGGTG
GGGAGGAGAAATGTAAACGCTGCAATGGATCCGGGAGACTGGCAGGCTGG
CTCTTTAACCTTAAGAGGCAGGCCTGA
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