mRNA_D-mesarthrocarpus_Contig11179.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig11179.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig11179.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
[Close]
BLAST of mRNA_D-mesarthrocarpus_Contig11179.1.1 vs. uniprot
Match: D7G5A9_ECTSI (Vesicle docking protein P115 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5A9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 3.670e-6
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  151 HAAVSPELAASVSLLRVLCRWMYGCPAAARELLESPSNLFLVDLAA 288
            HAA      A +SL R+LC WMYGCPAA  E+L++P+NLF+VD+AA
Sbjct:  605 HAAAD----AGISLERLLCGWMYGCPAAVVEMLDNPANLFVVDVAA 646
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig11179.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5A9_ECTSI3.670e-658.70Vesicle docking protein P115 n=2 Tax=Ectocarpus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig11179contigD-mesarthrocarpus_Contig11179:2366..2968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5A9
Preferred nameUSO1
PFAMsUso1_p115_C,Uso1_p115_head
Model size603
Max annot lvl2759|Eukaryota
KEGG koko:K11675,ko:K20361,ko:K20478
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0001650,GO:0002009,GO:0002165,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007346,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009987,GO:0010256,GO:0010389,GO:0010564,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019898,GO:0022406,GO:0022607,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031312,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0044719,GO:0045056,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048211,GO:0048219,GO:0048278,GO:0048471,GO:0048513,GO:0048563,GO:0048569,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051259,GO:0051260,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051726,GO:0060429,GO:0060562,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090066,GO:0090114,GO:0090498,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0140056,GO:1901987,GO:1901990,GO:1902749
Exons1
Evalue6.02e-07
EggNOG OGsKOG0946@1|root,KOG0946@2759|Eukaryota
DescriptionGolgi vesicle docking
Cds size603
COG categoryO
BRITEko00000,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789242.9012868-CDS-D-mesarthrocarpus_Contig11179:2365..29681680789242.9012868-CDS-D-mesarthrocarpus_Contig11179:2365..2968Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig11179 2366..2968 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig11179.1.1prot_D-mesarthrocarpus_Contig11179.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig11179 2366..2968 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig11179.1.1

>prot_D-mesarthrocarpus_Contig11179.1.1 ID=prot_D-mesarthrocarpus_Contig11179.1.1|Name=mRNA_D-mesarthrocarpus_Contig11179.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=201bp
SLALTPFPTPLGSATPFGPVADGAEETSTPSPISPPPLPLPPPLRLPLPQ
HAAVSPELAASVSLLRVLCRWMYGCPAAARELLESPSNLFLVDLAAAPGL
RASLPAPESSSHSSRGAGEKRERVEAGAGAQAGAGAGAGGNEVGLASPVL
RQAVMLKPAGWGWGEERGNERVGAGATSRNLVMGLACLLLGLVLEFMEGP
G
back to top

mRNA from alignment at D-mesarthrocarpus_Contig11179:2366..2968-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig11179.1.1 ID=mRNA_D-mesarthrocarpus_Contig11179.1.1|Name=mRNA_D-mesarthrocarpus_Contig11179.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=603bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11179:2366..2968- (Discosporangium mesarthrocarpum MT17_79)
TCCCTTGCCCTTACCCCTTTCCCCACCCCCTTAGGCTCAGCCACCCCTTT
CGGCCCTGTAGCGGATGGGGCTGAGGAGACAAGTACCCCTTCCCCCATTT
CGCCCCCGCCCTTGCCCCTGCCCCCTCCCCTTCGTCTTCCCCTGCCCCAG
CACGCAGCAGTCTCCCCGGAGCTTGCCGCATCCGTGTCCCTGCTCCGGGT
GCTGTGCCGCTGGATGTATGGCTGCCCCGCTGCGGCACGGGAGCTGCTGG
AGTCCCCCAGTAACCTCTTCCTGGTGGACCTGGCAGCTGCCCCTGGGCTA
CGGGCATCGCTACCAGCTCCAGAATCATCCTCTCATTCCTCGCGGGGGGC
TGGGGAGAAGAGGGAAAGGGTGGAGGCCGGGGCAGGGGCGCAGGCAGGAG
CAGGGGCAGGGGCAGGGGGCAATGAGGTGGGCTTGGCCTCCCCAGTCCTC
AGGCAGGCAGTGATGTTGAAGCCGGCTGGGTGGGGTTGGGGGGAAGAGCG
AGGGAATGAGAGGGTCGGGGCTGGTGCCACAAGCAGAAATTTGGTCATGG
GTCTGGCATGCCTTCTTCTGGGGCTTGTGCTTGAGTTCATGGAGGGGCCC
GGG
back to top

Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig11179:2366..2968-

>mRNA_D-mesarthrocarpus_Contig11179.1.1 ID=mRNA_D-mesarthrocarpus_Contig11179.1.1|Name=mRNA_D-mesarthrocarpus_Contig11179.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=603bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig11179:2366..2968- (Discosporangium mesarthrocarpum MT17_79)
TCCCTTGCCCTTACCCCTTTCCCCACCCCCTTAGGCTCAGCCACCCCTTT
CGGCCCTGTAGCGGATGGGGCTGAGGAGACAAGTACCCCTTCCCCCATTT
CGCCCCCGCCCTTGCCCCTGCCCCCTCCCCTTCGTCTTCCCCTGCCCCAG
CACGCAGCAGTCTCCCCGGAGCTTGCCGCATCCGTGTCCCTGCTCCGGGT
GCTGTGCCGCTGGATGTATGGCTGCCCCGCTGCGGCACGGGAGCTGCTGG
AGTCCCCCAGTAACCTCTTCCTGGTGGACCTGGCAGCTGCCCCTGGGCTA
CGGGCATCGCTACCAGCTCCAGAATCATCCTCTCATTCCTCGCGGGGGGC
TGGGGAGAAGAGGGAAAGGGTGGAGGCCGGGGCAGGGGCGCAGGCAGGAG
CAGGGGCAGGGGCAGGGGGCAATGAGGTGGGCTTGGCCTCCCCAGTCCTC
AGGCAGGCAGTGATGTTGAAGCCGGCTGGGTGGGGTTGGGGGGAAGAGCG
AGGGAATGAGAGGGTCGGGGCTGGTGCCACAAGCAGAAATTTGGTCATGG
GTCTGGCATGCCTTCTTCTGGGGCTTGTGCTTGAGTTCATGGAGGGGCCC
GGG
back to top