mRNA_D-mesarthrocarpus_Contig10048.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10048.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10048.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10048.3.1 vs. uniprot
Match: A0A2H4UW24_9VIRU (RING-finger domain-containing protein n=1 Tax=Bodo saltans virus TaxID=2024608 RepID=A0A2H4UW24_9VIRU)

HSP 1 Score: 55.8 bits (133), Expect = 1.680e-5
Identity = 32/95 (33.68%), Postives = 42/95 (44.21%), Query Frame = 1 
Query:  343 CRVCHHY-------------DRFAVRFMKCKTCLVSQRAGSSCQNPDCYSFGQEHWYYCDKCHLWEDAQKEIXXXXXXKICRAGDRNKFRHCDRC 588
            CR CH +             DRF V+ M CK C   Q    +C    C     +  Y+CDKC + +D  KE       KICR G ++ + HCD C
Sbjct:   35 CRQCHDFYEYETNIINSHKMDRFNVKKMICKMCDFEQPLSKNCVK--CGMIMGK--YFCDKCCIIDDNDKEYYHCDKCKICRCGKKDDYIHCDTC 125
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10048.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2H4UW24_9VIRU1.680e-533.68RING-finger domain-containing protein n=1 Tax=Bodo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10048contigD-mesarthrocarpus_Contig10048:3393..4542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra54902
PFAMszf-CHY,zf-RING_2
Model size859
Max annot lvl4776|Peronosporales
KEGG koko:K10144
KEGG Pathwayko04115,ko04120,ko05162,map04115,map04120,map05162
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.84e-11
EggNOG OGsKOG1940@1|root,KOG1940@2759|Eukaryota,3QF0V@4776|Peronosporales
EC2.3.2.27
DescriptionCHY zinc finger
Cds size348
COG categoryO
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.1400962-UTR-D-mesarthrocarpus_Contig10048:3392..36381680789151.1400962-UTR-D-mesarthrocarpus_Contig10048:3392..3638Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10048 3393..3638 +
1680789151.181113-UTR-D-mesarthrocarpus_Contig10048:4277..45421680789151.181113-UTR-D-mesarthrocarpus_Contig10048:4277..4542Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10048 4278..4542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789151.1559494-CDS-D-mesarthrocarpus_Contig10048:3638..38541680789151.1559494-CDS-D-mesarthrocarpus_Contig10048:3638..3854Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10048 3639..3854 +
1680789151.1707628-CDS-D-mesarthrocarpus_Contig10048:4145..42771680789151.1707628-CDS-D-mesarthrocarpus_Contig10048:4145..4277Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10048 4146..4277 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10048.3.1prot_D-mesarthrocarpus_Contig10048.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10048 3639..4277 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10048.3.1

>prot_D-mesarthrocarpus_Contig10048.3.1 ID=prot_D-mesarthrocarpus_Contig10048.3.1|Name=mRNA_D-mesarthrocarpus_Contig10048.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=116bp
MPLHRINPTQHYQRKVWVHPPGIKSSPGGFVACRVCHHYDRFAVRFMKCK
TCLVSQRAGSSCQNPDCYSFGQEHWYYCDKCHLWEDAQKEIFHCEKCKIC
RAGDRNKFRHCDRCR*
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mRNA from alignment at D-mesarthrocarpus_Contig10048:3393..4542+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10048.3.1 ID=mRNA_D-mesarthrocarpus_Contig10048.3.1|Name=mRNA_D-mesarthrocarpus_Contig10048.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10048:3393..4542+ (Discosporangium mesarthrocarpum MT17_79)
TCTCACAAACAGGAAGCAGAGCCCGATAAGCCATTTCTTCCCAAGGAAAC
GCTGGGGCCCTATGAGGGCAAATTAGCTTGTAAGGTAATGCAGAGGACTC
CTAGAATCATCTATTATGTGCTGATATGAAGAACGATTGATTCTGGGGGT
CGTGCGGTTGGAATGGTTAGCAAATCCCCTCTCTGACTGCGGGTCCGGCG
TAACAGATAGCTTCGAGCGCTCGTTTTTGCCTTTTGATTGTAGCTTATGC
CCCTTCACCGCATCAACCCTACCCAGCACTACCAGAGAAAGGTGTGGGTC
CATCCTCCGGGGATCAAAAGCTCCCCTGGTGGTTTTGTCGCCTGCAGGGT
GTGCCACCATTACGATCGTTTTGCCGTCAGGTTCATGAAGTGCAAGACGT
GCCTGGTGTCGCAACGGGCGGGGTCGTCGTGCCAGAACCCCGATTGCTAC
TCGTTCGGTCAGGTAAGGACATATTTAGTGAGAAAATAGTTGTCTTGGTA
CTATCTGTGCTGTCTCTACCCTGTCGGACATGCAGTATTTTTGCGAGAGA
CGGATGCAATAACCGAGATCAGTCCGATCACCTCGTGACCTTGGTATGAG
AAGTGAAATGATGTCTTCAAATGCAGTGAATTCTGGAGGAAACTAGTGGC
TTAGATGGAGATTATTCACACAAAGTAGGGGAAGGGGGTGTGATGAGCAT
TGAATTTTCCCCTCTCGCCTCGCGTCCAATTATCTTGTCTCGACCTCATT
TAGGAGCACTGGTATTATTGTGACAAGTGCCACCTGTGGGAGGACGCTCA
GAAGGAAATATTCCACTGCGAGAAGTGCAAAATTTGCCGCGCGGGGGACC
GAAACAAGTTCCGTCACTGCGACCGCTGCAGGTAAGCTTTAGTCTGTGCG
TCATAGTTCGGTTTAAGGTCAGGATGTGGGTAACGCAGCCGCAGGTCCAA
GAGGTGGGAGCTTGAGACAGCTAAAAGTGAGCAGCGAACCCGCCTGGAAA
GGTGAATCAGGGGGTAACGAGAGGTTAGCGTCGGGGTTAGGGTTAGGTCT
CCTCTACTCCGAGGAGCACTCCCTTGGTGTTAGGGTTAGGGTTAGGGTTA
GGTCTCCTCTACTCCGAGGAGCACTCCCTTGGTGTTAGGGTTAGGGTTAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10048:3393..4542+

>mRNA_D-mesarthrocarpus_Contig10048.3.1 ID=mRNA_D-mesarthrocarpus_Contig10048.3.1|Name=mRNA_D-mesarthrocarpus_Contig10048.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=348bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10048:3393..4542+ (Discosporangium mesarthrocarpum MT17_79)
ATGCCCCTTCACCGCATCAACCCTACCCAGCACTACCAGAGAAAGGTGTG
GGTCCATCCTCCGGGGATCAAAAGCTCCCCTGGTGGTTTTGTCGCCTGCA
GGGTGTGCCACCATTACGATCGTTTTGCCGTCAGGTTCATGAAGTGCAAG
ACGTGCCTGGTGTCGCAACGGGCGGGGTCGTCGTGCCAGAACCCCGATTG
CTACTCGTTCGGTCAGGAGCACTGGTATTATTGTGACAAGTGCCACCTGT
GGGAGGACGCTCAGAAGGAAATATTCCACTGCGAGAAGTGCAAAATTTGC
CGCGCGGGGGACCGAAACAAGTTCCGTCACTGCGACCGCTGCAGGTAA
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