mRNA_D-mesarthrocarpus_Contig10835.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10835.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig10835.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10835.3.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 5.900e-10
Identity = 67/207 (32.37%), Postives = 80/207 (38.65%), Query Frame = 3 
Query:  117 RAVMRLPSPSAYVALNGRDLEPPWTAEYWVFREEVEG------HAGYTVAASRTASVTAAGRAVRARDIQVAPAVSSCGSRVHTPRSVGGYSSPGPDGGGLPNTHPPLGGGGGGWVSPHFLDLRPS-----PMPTQGARKPFGNR----PPVLVRDSSVPLMERALSNPDSIVDLNQLPPSSPCDGAPGLFRTRPRGSSSAPGQDVD 692
            R+V+  PSP+AYV+L GRDLEPPWTAE+W+ R   +G       A    AA       + G               SC  R                                       L+L PS       P +G RK F  R    PP  V       M RA S P S VDL  LPP    +GAP L RTR   S+ A GQD +
Sbjct: 5107 RSVLCFPSPAAYVSLQGRDLEPPWTAEFWLLRPNPDGTWEDGDEATGEPAADAACKKESEGXXXXXXXXXXEKGERSCSIRP--------------------------------------LELGPSVALAVAAPPRGIRKAFSERLPQPPPATVS------MARASSTPSSSVDLTHLPPMDSANGAPSLARTR---SADAVGQDEE 5266
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BLAST of mRNA_D-mesarthrocarpus_Contig10835.3.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 7.960e-10
Identity = 66/197 (33.50%), Postives = 81/197 (41.12%), Query Frame = 3 
Query:  117 RAVMRLPSPSAYVALNGRDLEPPWTAEYWVFREEVEGHAGYTVAASRTASVTAAGRAVRARDIQVAPAVSSCGSRVHTPRSVGGYSSPGPDGGGLPNTHPPLGGGGGGWVSPHFLDLRPS-----PMPTQGARKPFGNRPPVLVRDSSVPLMERALSNPDSIVDLNQLPPSSPCDGAPGLFRTRPRGSSSAPGQDVD 692
            R+V+  PSP+AYV+L GRDLEPPWTAE+W+ R   +G       A+   +  AAG   R                        G  S                       S   L+L PS       P +G RK F  R P      +   M RA S P S VDL  LPP    +GAP L RTR   S+ A GQD +
Sbjct: 5669 RSVLCFPSPAAYVSLQGRDLEPPWTAEFWLLRPNPDGTWQDGDEATGEPAADAAGNKERGXXXXX---------XXXXXXXXKGERS----------------------CSIQPLELGPSVGLAVAAPPRGIRKAFSERLPQ--PPPATASMARASSTPSSSVDLTHLPPMDSANGAPSLARTR---SADAVGQDEE 5829
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10835.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI5.900e-1032.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE7.960e-1033.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10835contigD-mesarthrocarpus_Contig10835:1532..2340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LCZ5
PFAMsRCC1
Model size810
Max annot lvl2759|Eukaryota
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.33e-11
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
EC2.3.2.26
Descriptionguanyl-nucleotide exchange factor activity
Cds size801
COG categoryDZ
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789216.8911562-CDS-D-mesarthrocarpus_Contig10835:1531..23321680789216.8911562-CDS-D-mesarthrocarpus_Contig10835:1531..2332Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10835 1532..2332 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789216.9106584-UTR-D-mesarthrocarpus_Contig10835:2332..23401680789216.9106584-UTR-D-mesarthrocarpus_Contig10835:2332..2340Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10835 2333..2340 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10835.3.1prot_D-mesarthrocarpus_Contig10835.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10835 1532..2332 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10835.3.1

>prot_D-mesarthrocarpus_Contig10835.3.1 ID=prot_D-mesarthrocarpus_Contig10835.3.1|Name=mRNA_D-mesarthrocarpus_Contig10835.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=267bp
MEGQLGGEASGTPVRASFEVGCAPSASSIVVAPGHTRAVMRLPSPSAYVA
LNGRDLEPPWTAEYWVFREEVEGHAGYTVAASRTASVTAAGRAVRARDIQ
VAPAVSSCGSRVHTPRSVGGYSSPGPDGGGLPNTHPPLGGGGGGWVSPHF
LDLRPSPMPTQGARKPFGNRPPVLVRDSSVPLMERALSNPDSIVDLNQLP
PSSPCDGAPGLFRTRPRGSSSAPGQDVDSSSAGGGSESFIMGGGGVAGAG
AGAQGEDMSRDRWEEEQ
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mRNA from alignment at D-mesarthrocarpus_Contig10835:1532..2340-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10835.3.1 ID=mRNA_D-mesarthrocarpus_Contig10835.3.1|Name=mRNA_D-mesarthrocarpus_Contig10835.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=809bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10835:1532..2340- (Discosporangium mesarthrocarpum MT17_79)
ATGGTGTAATGGAAGGCCAGCTGGGAGGGGAGGCTTCTGGGACTCCTGTC
AGGGCCAGCTTTGAAGTGGGATGTGCCCCGAGTGCCTCCAGCATAGTTGT
GGCTCCAGGGCACACCCGAGCAGTCATGCGCTTGCCCTCGCCATCAGCTT
ATGTAGCACTGAATGGGCGCGACCTGGAGCCCCCCTGGACAGCGGAGTAC
TGGGTCTTCCGGGAGGAGGTTGAGGGGCATGCCGGTTACACTGTTGCTGC
CTCGAGGACGGCATCGGTCACAGCAGCGGGGAGGGCGGTGAGGGCCAGAG
ACATACAGGTCGCCCCTGCGGTGTCTTCCTGCGGCAGCCGGGTCCACACA
CCCCGTTCAGTAGGGGGCTACTCCTCCCCGGGGCCGGACGGGGGAGGCTT
GCCAAACACGCACCCTCCTCTTGGGGGGGGGGGGGGAGGCTGGGTGTCCC
CCCACTTTCTCGACCTGCGGCCATCTCCAATGCCCACACAAGGTGCCCGG
AAGCCGTTTGGCAACCGCCCCCCTGTGCTGGTCCGGGACTCCTCTGTCCC
CCTGATGGAGCGGGCACTGAGCAACCCGGACTCAATTGTGGACCTGAACC
AGCTGCCTCCGTCTAGCCCCTGTGACGGGGCCCCGGGCCTCTTCCGAACC
CGACCCAGGGGCAGCAGTAGTGCCCCAGGGCAGGATGTCGACAGCAGCAG
CGCTGGTGGTGGGAGTGAGAGCTTCATCATGGGGGGCGGCGGGGTCGCAG
GGGCAGGTGCGGGGGCACAGGGTGAGGACATGAGCAGGGATCGCTGGGAG
GAGGAGCAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10835:1532..2340-

>mRNA_D-mesarthrocarpus_Contig10835.3.1 ID=mRNA_D-mesarthrocarpus_Contig10835.3.1|Name=mRNA_D-mesarthrocarpus_Contig10835.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=801bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10835:1532..2340- (Discosporangium mesarthrocarpum MT17_79)
ATGGAAGGCCAGCTGGGAGGGGAGGCTTCTGGGACTCCTGTCAGGGCCAG
CTTTGAAGTGGGATGTGCCCCGAGTGCCTCCAGCATAGTTGTGGCTCCAG
GGCACACCCGAGCAGTCATGCGCTTGCCCTCGCCATCAGCTTATGTAGCA
CTGAATGGGCGCGACCTGGAGCCCCCCTGGACAGCGGAGTACTGGGTCTT
CCGGGAGGAGGTTGAGGGGCATGCCGGTTACACTGTTGCTGCCTCGAGGA
CGGCATCGGTCACAGCAGCGGGGAGGGCGGTGAGGGCCAGAGACATACAG
GTCGCCCCTGCGGTGTCTTCCTGCGGCAGCCGGGTCCACACACCCCGTTC
AGTAGGGGGCTACTCCTCCCCGGGGCCGGACGGGGGAGGCTTGCCAAACA
CGCACCCTCCTCTTGGGGGGGGGGGGGGAGGCTGGGTGTCCCCCCACTTT
CTCGACCTGCGGCCATCTCCAATGCCCACACAAGGTGCCCGGAAGCCGTT
TGGCAACCGCCCCCCTGTGCTGGTCCGGGACTCCTCTGTCCCCCTGATGG
AGCGGGCACTGAGCAACCCGGACTCAATTGTGGACCTGAACCAGCTGCCT
CCGTCTAGCCCCTGTGACGGGGCCCCGGGCCTCTTCCGAACCCGACCCAG
GGGCAGCAGTAGTGCCCCAGGGCAGGATGTCGACAGCAGCAGCGCTGGTG
GTGGGAGTGAGAGCTTCATCATGGGGGGCGGCGGGGTCGCAGGGGCAGGT
GCGGGGGCACAGGGTGAGGACATGAGCAGGGATCGCTGGGAGGAGGAGCA
G
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