mRNA_D-mesarthrocarpus_Contig10801.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10801.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10801.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: D8LBZ6_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.390e-13
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    4 GKKTLRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSR-SWQGHQ 177
            G   LRG E LMM+++V WP+SLVLSK +L KYQ LFRHLFF K+V+R+LS+ SW+ HQ
Sbjct:   22 GTAELRGVEGLMMSFKVGWPVSLVLSKKSLTKYQLLFRHLFFAKHVQRLLSKDSWREHQ 80
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A835ZJD2_9STRA (Spc98 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJD2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.830e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   16 LRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQVI 183
            LRG ++L++TY V+WPLSL++S   L KY  LFRHLFF K+VERML  +W+ HQ I
Sbjct:  917 LRGMDSLVLTYRVKWPLSLIISAKALTKYNLLFRHLFFAKHVERMLLGTWRDHQAI 972
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A4Y1RTP4_PRUDU (Gamma-tubulin complex component n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RTP4_PRUDU)

HSP 1 Score: 71.6 bits (174), Expect = 1.880e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:   13 TLRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQVID 186
            ++ G E   + Y++RWPLS+V+SKH+L KYQ +FR LF  K+V+R L  +WQ HQVI+
Sbjct:  355 SITGLETFSLNYKIRWPLSIVISKHSLTKYQLIFRFLFHCKHVDRQLCGAWQAHQVIE 412
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A7S2FEB1_9EUKA (Spindle pole body component (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FEB1_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 6.790e-11
Identity = 31/52 (59.62%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   22 GAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQ 177
            G +A    Y V WPLSL+LSKH++ KYQ LFRHLF  K+VER LS SW   Q
Sbjct:   10 GLDAFTFDYSVGWPLSLILSKHSVTKYQLLFRHLFHCKHVERQLSSSWLSQQ 61
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: F4PY98_CAVFA (Spindle pole body component n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PY98_CAVFA)

HSP 1 Score: 70.1 bits (170), Expect = 7.200e-11
Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 GKKTLRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQ 177
            G K L G E+L   Y+V+WPLSLV+S+ +L+KYQ +FRHLF  K+VE++L  +W  HQ
Sbjct:  632 GGKPLLGIESLAFNYKVKWPLSLVISRKSLVKYQIIFRHLFLCKHVEKLLCNTWNLHQ 689
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A7S3XS90_HETAK (Spindle pole body component (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XS90_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-10
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:   16 LRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQ 177
            L+G EA M  Y+V WPLS+V+SK  L  YQ LFRHLFF+K+VER L  +W  HQ
Sbjct:  179 LKGIEAFMFNYQVTWPLSIVVSKRALTMYQLLFRHLFFSKHVERRLLTAWLDHQ 232
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A7S0WJZ1_9CHLO (Gamma-tubulin complex component n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WJZ1_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.150e-10
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:   16 LRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQ 177
            LRG +A  + Y V+WP+SLVLSK  L KYQ LFRHLF  K+VER L ++WQ HQ
Sbjct:  233 LRGYDAFTLDYLVQWPVSLVLSKRALTKYQLLFRHLFHCKHVERQLCQTWQQHQ 286
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A1R2CAY1_9CILI (Spindle pole body component n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CAY1_9CILI)

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-10
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:   19 RGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQ 177
            +G E  ++ Y+VRWPL+L++S+  L KYQ +FRHLFF KYVER LS +W  HQ
Sbjct:  630 KGLETFVLDYKVRWPLTLIISRKALTKYQLIFRHLFFCKYVERQLSNTWILHQ 682
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A7S2WAJ6_9STRA (Spindle pole body component n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WAJ6_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.340e-10
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   16 LRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQV 180
            L G +A  + ++VRWPLSLVLS+  L KYQ +FRHLFF K+VER L  +W  HQ 
Sbjct:  838 LHGVDAFTLDFKVRWPLSLVLSRQALTKYQLIFRHLFFCKHVERQLCTTWLAHQT 892
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BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Match: A0A2R5GGM5_9STRA (Gamma-tubulin complex component 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GGM5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.840e-10
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   16 LRGAEALMMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQV 180
            L G +A  + ++VRWPLSLVLS+  L KYQ +FRHLFF K+VER L  +W  HQ 
Sbjct:  991 LHGIDAFTLDFKVRWPLSLVLSRQALTKYQLIFRHLFFCKHVERQLCTTWLAHQT 1045
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10801.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ6_ECTSI5.390e-1362.71Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A835ZJD2_9STRA1.830e-1258.93Spc98 family-domain-containing protein n=1 Tax=Tri... [more]
A0A4Y1RTP4_PRUDU1.880e-1151.72Gamma-tubulin complex component n=1 Tax=Prunus dul... [more]
A0A7S2FEB1_9EUKA6.790e-1159.62Spindle pole body component (Fragment) n=1 Tax=Hap... [more]
F4PY98_CAVFA7.200e-1153.45Spindle pole body component n=1 Tax=Cavenderia fas... [more]
A0A7S3XS90_HETAK1.150e-1059.26Spindle pole body component (Fragment) n=2 Tax=Het... [more]
A0A7S0WJZ1_9CHLO1.150e-1061.11Gamma-tubulin complex component n=1 Tax=Pyramimona... [more]
A0A1R2CAY1_9CILI1.300e-1056.60Spindle pole body component n=1 Tax=Stentor coerul... [more]
A0A7S2WAJ6_9STRA1.340e-1056.36Spindle pole body component n=1 Tax=labyrinthulid ... [more]
A0A2R5GGM5_9STRA1.840e-1056.36Gamma-tubulin complex component 2 n=1 Tax=Hondaea ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10801contigD-mesarthrocarpus_Contig10801:114..628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBZ6
PFAMsSpc97_Spc98
Model size515
Max annot lvl2759|Eukaryota
KEGG koko:K16569
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000280,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005822,GO:0005824,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008150,GO:0008275,GO:0009987,GO:0015630,GO:0015631,GO:0016043,GO:0022402,GO:0022414,GO:0022607,GO:0031109,GO:0031122,GO:0032153,GO:0032155,GO:0032991,GO:0034622,GO:0043015,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0046785,GO:0048285,GO:0051225,GO:0051258,GO:0051321,GO:0051415,GO:0051418,GO:0065003,GO:0070925,GO:0071840,GO:0090307,GO:0097435,GO:0140014,GO:1902850,GO:1903047
Exons1
Evalue6.6e-12
EggNOG OGsKOG2001@1|root,KOG2001@2759|Eukaryota
Descriptionmicrotubule nucleation by interphase microtubule organizing center
Cds size165
COG categoryH
BRITEko00000,ko03036,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789214.0585606-UTR-D-mesarthrocarpus_Contig10801:113..4271680789214.0585606-UTR-D-mesarthrocarpus_Contig10801:113..427Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10801 114..427 -
1680789214.0909297-UTR-D-mesarthrocarpus_Contig10801:592..6281680789214.0909297-UTR-D-mesarthrocarpus_Contig10801:592..628Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig10801 593..628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789214.0771425-CDS-D-mesarthrocarpus_Contig10801:427..5921680789214.0771425-CDS-D-mesarthrocarpus_Contig10801:427..592Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10801 428..592 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10801.1.1prot_D-mesarthrocarpus_Contig10801.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10801 428..592 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10801.1.1

>prot_D-mesarthrocarpus_Contig10801.1.1 ID=prot_D-mesarthrocarpus_Contig10801.1.1|Name=mRNA_D-mesarthrocarpus_Contig10801.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=55bp
MMTYEVRWPLSLVLSKHTLIKYQYLFRHLFFTKYVERMLSRSWQGHQVID
CGHG*
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mRNA from alignment at D-mesarthrocarpus_Contig10801:114..628-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10801.1.1 ID=mRNA_D-mesarthrocarpus_Contig10801.1.1|Name=mRNA_D-mesarthrocarpus_Contig10801.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=515bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10801:114..628- (Discosporangium mesarthrocarpum MT17_79)
AATGGAAAAAAGACGCTCCGGGGGGCGGAGGCCCTGATGATGACATACGA
AGTTAGGTGGCCCCTGTCGCTGGTGCTCTCCAAGCACACCCTGATCAAGT
ACCAGTACCTGTTCCGGCACCTCTTCTTCACCAAGTACGTCGAGAGGATG
CTCTCCAGGTCATGGCAGGGCCACCAGGTGATAGATTGCGGTCATGGCTA
GGGTTAGGGTCAGGGCTCTTCTGCGGCGTATGCCGGGAGGGGGCATGCAT
GCAGCCCTCTGCATTCTCACGATTGCTTTTCAGGGCGCCCTTCCAAATGC
CCTCACAATAGTCATCAGTTTAACGGAAGTACCTTGCTGCAGTCGGTCAT
CAACACAGTGTTCAAAGCACAACACAGTGTTATGCACACGCGCGTGTGCG
TAACATATCCATGTACTCTCTGAGAGGGCCTTCGAAAAACGCCTGCTGCA
CCCCATGTCACATGCCCCCCTTGCGGGCCCCGCCCCTCGTGCAATCGCTA
ACCCTAACCCTGGCC
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10801:114..628-

>mRNA_D-mesarthrocarpus_Contig10801.1.1 ID=mRNA_D-mesarthrocarpus_Contig10801.1.1|Name=mRNA_D-mesarthrocarpus_Contig10801.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=165bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10801:114..628- (Discosporangium mesarthrocarpum MT17_79)
ATGATGACATACGAAGTTAGGTGGCCCCTGTCGCTGGTGCTCTCCAAGCA
CACCCTGATCAAGTACCAGTACCTGTTCCGGCACCTCTTCTTCACCAAGT
ACGTCGAGAGGATGCTCTCCAGGTCATGGCAGGGCCACCAGGTGATAGAT
TGCGGTCATGGCTAG
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