mRNA_D-mesarthrocarpus_Contig10770.1.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10770.1.1
Unique NamemRNA_D-mesarthrocarpus_Contig10770.1.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
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BLAST of mRNA_D-mesarthrocarpus_Contig10770.1.1 vs. uniprot
Match: A0A6H5K928_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K928_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.010e-22
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:  262 EEQKRHLERLSDALSQGVWPTYARLACVLDFLTLRAIHAQLCQALDALLGRSWLGARAPLPARACGAVPFHPCRPGGEALGV 507
            EE++ HL RL+D+LS+GVWPTYARLAC L+ L LRA HAQLC++L  L+      ARAPL AR CG VPFHP   GG ALG 
Sbjct: 3216 EEEREHLVRLTDSLSRGVWPTYARLACALNLLALRATHAQLCRSLAGLIWGDGYRARAPLTARVCGMVPFHPAGEGGVALGT 3297
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10770.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K928_9PHAE4.010e-2262.20PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10770contigD-mesarthrocarpus_Contig10770:163..1228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons2
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789210.1419077-CDS-D-mesarthrocarpus_Contig10770:162..2541680789210.1419077-CDS-D-mesarthrocarpus_Contig10770:162..254Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10770 163..254 +
1680789210.1649542-CDS-D-mesarthrocarpus_Contig10770:730..12261680789210.1649542-CDS-D-mesarthrocarpus_Contig10770:730..1226Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10770 731..1226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10770.1.1prot_D-mesarthrocarpus_Contig10770.1.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10770 163..1226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10770.1.1

>prot_D-mesarthrocarpus_Contig10770.1.1 ID=prot_D-mesarthrocarpus_Contig10770.1.1|Name=mRNA_D-mesarthrocarpus_Contig10770.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=196bp
YAHPRAGDADRLAGSRSSDTPDAWLLQTLASIQPTEFEALGLEPWEMGLG
IDLFSGGVAPTKGSLASTAALAAAASTSGGAPPHADGEEQKRHLERLSDA
LSQGVWPTYARLACVLDFLTLRAIHAQLCQALDALLGRSWLGARAPLPAR
ACGAVPFHPCRPGGEALGVRGGPQGDGSPAPSDLGKGLGSRKEDVV
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mRNA from alignment at D-mesarthrocarpus_Contig10770:163..1228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10770.1.1 ID=mRNA_D-mesarthrocarpus_Contig10770.1.1|Name=mRNA_D-mesarthrocarpus_Contig10770.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1066bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10770:163..1228+ (Discosporangium mesarthrocarpum MT17_79)
TATGCCCATCCTAGGGCCGGGGATGCGGACAGGCTTGCCGGGTCACGCTC
TTCTGACACCCCTGATGCATGGCTGCTGCAAACTTTGGCGAGGTGGGTGT
GCAATGCCTGATGGCTGTGAGGGTGTGTTTTTTGTTCTGGGGATCACAGG
AATTGTGGGAGTGACAAGGGGGTGAGTGACAAGGGAGAGGCGAGTGTTGT
GTTCCCCACAGCCCAAGGGAGCACCCCACATACTACTGACCCTGCAACTC
ACGGAGCACTGCATTATTAATTTTTTTGTACCAAGCCTTGGCTGAGGAGG
TGTGGGGAAAGGGGAGTGGGAGGGTAGGGGAGGGGGGATTCATTTGTAAG
AATCTTGCGTGTGAGTGTGTTGTTCCTTTCCATCTTTTTCCTCCCACACT
TTTGGTCCACCCTCCGGCAACATCACCACCACGGATACTTTTTTGTTTTG
GAATGCCACACTGGAGCTGTCCATTTCTAAGCCACAGCCCCCTAACGGTT
CCTCAAACAGCTTGGAGTAACAAGTACATCATCCCCCCCCCTCCCTCCCT
CACCCCCCCACCTTCCAGTATTCAACCCACAGAGTTTGAGGCCCTCGGGC
TCGAGCCCTGGGAGATGGGGCTTGGGATTGATCTCTTCTCGGGGGGGGTG
GCACCAACGAAGGGATCCTTGGCCTCCACAGCAGCCTTGGCTGCTGCTGC
CTCCACCTCTGGGGGGGCACCACCTCACGCAGATGGCGAGGAGCAGAAGA
GGCACCTGGAGCGGCTGTCGGACGCCCTCAGCCAGGGTGTGTGGCCCACC
TATGCCCGCCTTGCCTGTGTGCTCGACTTCCTAACCCTGCGGGCCATACA
TGCCCAGCTCTGTCAGGCGCTTGATGCCTTGCTGGGGCGCAGCTGGCTGG
GGGCCAGGGCACCCCTCCCTGCGAGAGCCTGCGGGGCCGTGCCGTTCCAC
CCCTGCCGGCCCGGGGGCGAGGCCCTGGGGGTCAGAGGTGGGCCCCAGGG
TGATGGGAGTCCAGCGCCTTCGGACCTGGGGAAGGGGCTGGGTTCAAGGA
AAGAGGATGTGGTCGG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10770:163..1228+

>mRNA_D-mesarthrocarpus_Contig10770.1.1 ID=mRNA_D-mesarthrocarpus_Contig10770.1.1|Name=mRNA_D-mesarthrocarpus_Contig10770.1.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=588bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10770:163..1228+ (Discosporangium mesarthrocarpum MT17_79)
TATGCCCATCCTAGGGCCGGGGATGCGGACAGGCTTGCCGGGTCACGCTC
TTCTGACACCCCTGATGCATGGCTGCTGCAAACTTTGGCGAGTATTCAAC
CCACAGAGTTTGAGGCCCTCGGGCTCGAGCCCTGGGAGATGGGGCTTGGG
ATTGATCTCTTCTCGGGGGGGGTGGCACCAACGAAGGGATCCTTGGCCTC
CACAGCAGCCTTGGCTGCTGCTGCCTCCACCTCTGGGGGGGCACCACCTC
ACGCAGATGGCGAGGAGCAGAAGAGGCACCTGGAGCGGCTGTCGGACGCC
CTCAGCCAGGGTGTGTGGCCCACCTATGCCCGCCTTGCCTGTGTGCTCGA
CTTCCTAACCCTGCGGGCCATACATGCCCAGCTCTGTCAGGCGCTTGATG
CCTTGCTGGGGCGCAGCTGGCTGGGGGCCAGGGCACCCCTCCCTGCGAGA
GCCTGCGGGGCCGTGCCGTTCCACCCCTGCCGGCCCGGGGGCGAGGCCCT
GGGGGTCAGAGGTGGGCCCCAGGGTGATGGGAGTCCAGCGCCTTCGGACC
TGGGGAAGGGGCTGGGTTCAAGGAAAGAGGATGTGGTC
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