mRNA_D-mesarthrocarpus_Contig10560.2.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig10560.2.1
Unique NamemRNA_D-mesarthrocarpus_Contig10560.2.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: D7G5N6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 9.910e-37
Identity = 61/132 (46.21%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    7 GNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRN-GVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWGK 399
            G  + PVL G DVV+Y+ L  G   ++G        N Y F F++ +NK +F+A+P  Y PAWGGFCA+GIAAED W+   LGPP+DP SWLI +  VL +F S VP   + +D+ GN   G+  W  WWG+
Sbjct:   76 GTSTEPVLNGADVVSYFSLKEGEAAMYGFEEYPVKYNGYTFLFASAQNKALFEASPLDYIPAWGGFCAYGIAAEDWWTVSTLGPPSDPNSWLITDDNVLRIFRSEVPKAYFMEDIPGNIATGNRIWTGWWGE 207          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: D7FW13_ECTSI (YHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW13_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.540e-34
Identity = 62/132 (46.97%), Postives = 83/132 (62.88%), Query Frame = 1
Query:    1 CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIR--NGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASW 390
            CTG+  LPVL GVDVVAY+ L  G+ PV G  ++ +   +Y FYFS+ EN + F+++P +Y PAWGGFC++G+AAE  W    LGP  DP+ WLI   +G L+VF S  PM ++      N  AGD  W  W
Sbjct:  106 CTGDTHLPVLGGVDVVAYWTLPAGSKPVFGTPNLVSLFGDYRFYFSSIENLRTFESDPVRYIPAWGGFCSYGVAAETFWRPDILGPFGDPSKWLILPGDGKLHVFRSERPMTKFLLAPGENLEAGDAIWNGW 237          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A6V1WB01_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WB01_HETAK)

HSP 1 Score: 121 bits (303), Expect = 8.070e-32
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    7 GNRSLPVLEGVDVVAYYQLDPGA-DPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWGK 399
            G  + PV++G DVVAY+ L   A + V G    +A  + Y FYFSTEENKQ F  +P KY P +G FC+WGI+AE  W+   LGPP DP  W I  G L +F+     K++  D+  +   G  RW +W+G+
Sbjct:   69 GESAAPVIQGYDVVAYFDLPEDATEAVLGKEDYKANYHGYDFYFSTEENKQAFLGSPEKYVPKYGAFCSWGISAESFWTPSTLGPPVDPNVWQIYAGELLLFYREAAKKKFMVDVNKHFEEGSKRWLNWYGE 200          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A6V1P5D3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5D3_HETAK)

HSP 1 Score: 108 bits (271), Expect = 5.280e-25
Identity = 58/140 (41.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:    1 CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNN----YAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKG----FLGPPADPASWLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWG 396
            CT +R   V +GVDVVAY  L  G++PV G     A L      Y FYFS+EEN+  F  NPW YAPAWGGF A+ ++AE+ W +G     LGP  D + W    G LYVF ++     +  + Y +      RW+ W+G
Sbjct:  353 CTKDR-YAVFDGVDVVAYSYLPDGSEPVMGKEEFPAKLQTSEKAYLFYFSSEENRNAFLENPWAYAPAWGGFDAYAMSAENEWGRGGSKRILGPDPDLSQWAYFEGRLYVFGNADSKAAWMTNPYPHLDEASKRWSGWYG 491          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S2W6K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6K5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.000e-24
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 1
Query:    1 CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRNGVLYVFHSSVPMKEYT-DDMYGNKVAGDNRWA 384
            CT     PVL GVDVV Y+ L      V G   + A +  Y F+FST+ NK +F+ NP KY P +GGFCA+GI  ++ W+   L  P+DP +W I +G LY+F SS  ++E+   D+    + G  RW 
Sbjct:   60 CTSPSLGPVLSGVDVVGYFSLSTDEQAVQGSPDLVARVGKYDFFFSTQRNKALFEVNPRKYMPQFGGFCAYGIT-KNSWTADSLDLPSDPDAWRIIDGKLYLFKSSSYLEEFVAGDVETELLGGYKRWG 187          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S3UVA0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVA0_HETAK)

HSP 1 Score: 102 bits (253), Expect = 1.420e-24
Identity = 51/130 (39.23%), Postives = 70/130 (53.85%), Query Frame = 1
Query:    1 CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASW 390
            C    + PVLEG DVVAY+ LDP  D V G S   +    + FYFS++EN + F+++P KY PAWGGFCA+G+A E  W+   +     P +W I +G L+ FH       +   +      GD  W  W
Sbjct:    8 CLDAGAGPVLEGYDVVAYFGLDPLDDGVQGSSEFTSVYQGFEFYFSSKENMEKFESDPEKYVPAWGGFCAYGVAEETWWTAETMSAGVVPDAWRIIDGRLFFFHDIGVAAWFAALLPDAIREGDATWHGW 137          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S0AP94_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AP94_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.570e-22
Identity = 53/132 (40.15%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   22 PVLEGVDVVAYY---QLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDI---WSKGFLGPPADPAS-WLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWG 396
            PVL G DVV Y+       G   V G          Y F+FST EN++ F  NPWKYAPAWGGFC+WG+  E     W+  FLGPPA P + W+I +GVL           +  ++  N      RW++W+G
Sbjct:   30 PVLLGFDVVQYHFIPSFKDGGVAVRGKPEFAYNFEGYQFWFSTLENRRAFVENPWKYAPAWGGFCSWGVGLEVAGWPWAIDFLGPPASPWNGWIIVDGVLIFNIWESYSDRFARNLDTNMALAAERWSNWFG 161          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S2FI38_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI38_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.100e-19
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   22 PVLEGVDVVAYYQLD--PGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAED----------IWSKGFLGPPADPASWLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWGK 399
            PVL G DV  Y+ LD   G + V G+    A    Y FYF++  N+ +F+ANP  YAPA+GGFCA+G++  D          +WS      P D   + + +G LY+F  S   + + +    +   GD  W+SW+G+
Sbjct:   99 PVLSGFDVTEYFSLDYDAGDEAVQGLDEYTATYMGYTFYFASSANRALFEANPSLYAPAYGGFCAYGVSGYDGNNFMTKQTQLWST-----PVDVNEYAVIDGTLYMFRGSDAREFFVESSDTDISGGDGLWSSWFGE 231          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S2CI31_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CI31_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.040e-19
Identity = 45/131 (34.35%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRNGVLYVFHSSVPMKEY-TDDMYGNKVAGDNRWASW 390
            C    + PV++G D+V Y+ L PGAD   G     +    Y F F   +N + F  +P  Y P +GGF A+ I+ +  ++   LGP A+P  W I N  LY F    P+K++ T +M    +AG+  W S+
Sbjct:   81 CLLTTTGPVMDGYDIVEYFNLKPGADGRKGTEEFESTFGGYTFRFLNNKNMKAFGVDPTSYLPQYGGFDAYQISKDSWYTAETLGPDANPNVWKITNDKLYFFMFDTPLKKFETGNMSARIIAGNQIWRSY 211          
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Match: A0A7S2CSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSE7_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 9.040e-19
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   22 PVLEGVDVVAYYQLDPGAD---------PVHGVSSIRAYLNNYAFYFSTEENKQVFQANPWKYAPAWGGFCAWGIAAED----IWSKG-FLGPPADPASWLIRNGVLYVFHSSVPMKEYTDDMYGNKVAGDNRWASWWG 396
            PVLEG+DVV+Y+      D            G  +I +  + Y+FYFS+ EN+ +F  NP KY P +GGFCA+GI+  D    + S+  F   P DP  + I  G LY+F  S   + + +    N   G+++W  W G
Sbjct:    2 PVLEGMDVVSYFDEADNTDFYMAPDDFSATLGQETISSTFDGYSFYFSSTENQALFDENPVKYIPTFGGFCAYGISGYDGMNYLHSESQFWSVPVDPDQYAILEGDLYLFRGSGAKELFVNKSQTNIKGGESQWTGWVG 140          
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig10560.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N6_ECTSI9.910e-3746.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FW13_ECTSI2.540e-3446.97YHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6V1WB01_HETAK8.070e-3243.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1P5D3_HETAK5.280e-2541.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W6K5_9STRA1.000e-2441.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3UVA0_HETAK1.420e-2439.23Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S0AP94_9STRA3.570e-2240.15Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2FI38_9STRA1.100e-1934.78Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2CI31_9STRA2.040e-1934.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2CSE7_9STRA9.040e-1935.25Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig10560contigD-mesarthrocarpus_Contig10560:3089..4243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8M9
Model size399
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue9.41e-38
EggNOG OGs2D48G@1|root,2SU9E@2759|Eukaryota
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789192.4515061-CDS-D-mesarthrocarpus_Contig10560:3088..31921680789192.4515061-CDS-D-mesarthrocarpus_Contig10560:3088..3192Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10560 3089..3192 +
1680789192.4637845-CDS-D-mesarthrocarpus_Contig10560:3304..33651680789192.4637845-CDS-D-mesarthrocarpus_Contig10560:3304..3365Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10560 3305..3365 +
1680789192.4787278-CDS-D-mesarthrocarpus_Contig10560:3670..38191680789192.4787278-CDS-D-mesarthrocarpus_Contig10560:3670..3819Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10560 3671..3819 +
1680789192.4892325-CDS-D-mesarthrocarpus_Contig10560:4158..42431680789192.4892325-CDS-D-mesarthrocarpus_Contig10560:4158..4243Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig10560 4159..4243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig10560.2.1prot_D-mesarthrocarpus_Contig10560.2.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig10560 3089..4243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig10560.2.1

>prot_D-mesarthrocarpus_Contig10560.2.1 ID=prot_D-mesarthrocarpus_Contig10560.2.1|Name=mRNA_D-mesarthrocarpus_Contig10560.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=133bp
CTGNRSLPVLEGVDVVAYYQLDPGADPVHGVSSIRAYLNNYAFYFSTEEN
KQVFQANPWKYAPAWGGFCAWGIAAEDIWSKGFLGPPADPASWLIRNGVL
YVFHSSVPMKEYTDDMYGNKVAGDNRWASWWGK
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mRNA from alignment at D-mesarthrocarpus_Contig10560:3089..4243+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig10560.2.1 ID=mRNA_D-mesarthrocarpus_Contig10560.2.1|Name=mRNA_D-mesarthrocarpus_Contig10560.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1155bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10560:3089..4243+ (Discosporangium mesarthrocarpum MT17_79)
TGCACGGGAAATCGCAGTCTTCCTGTGTTGGAAGGGGTTGATGTGGTAGC GTATTACCAACTCGACCCGGGTGCTGACCCCGTGCACGGTGTCTCCTCCA TAAGGTGGGAATGTATATTACCTGATCTTCAATACCGGCGTACGTTGGCC AAAACATCTTGTAGCTGCGGTGACATCCCTAACGATTTTTTTGCCCTGCC CCCCCCCTCCTCGAAGGGCATACCTGAACAATTACGCGTTTTACTTCAGT ACAGAGGAAAACAAGCAAGTGTTTCAGGTGAGACCCAGTTGTGGCAGCTC TGGGTTTTTATCTTGGTGGCAAGAGGGGCTCAGCTATACGTATGGGTTAT TATCTTGTGTCTGACTCCAGCCATCGCACAACTCCGGTTCAGAGACAGGT TCGAAGTAGGGTTGATGCGCTTCGGCTGATGGGCTGTGGTGTGTGTGTGG TGCATCTGGTGTGCGGCTTTGCTGAGTTCGTGCTGTGCAAAACTGTGAAC GAAAAATGCCTGCCCTTCTTTCTTCAAAGCTTCCGTTGTATTTTTGGTGT TCGCTGATGTCACCCCAACTCTTAACCCACAGGCCAACCCCTGGAAGTAT GCCCCGGCATGGGGAGGGTTTTGCGCGTGGGGTATTGCTGCAGAAGATAT CTGGAGTAAGGGGTTCCTGGGACCACCAGCAGACCCAGCGTCATGGTTGA TAAGAAACGGTGTACTCTATGTCTTCCACAGGTGATTTCTTGGTTTATAG GAGAGAAATGGGGGGAAGCTAAATACCTGGCATCCTCATCAAGTTTTGCA GCCCACCTGCAAGTTCACCACATGAGCAACATCAGGACCACCATTTTGTC CCTCTCCCTTCCCCTCCCCTCCCCTCCCCTCCCCAATGCTCCCGTGGCGT TTGTATATCCTGGTTATCCTGTGGGTTGCCTTCCTGTGGGTTCTTTTGGT CTTCTGTGGGCGGGGTGGTGTGATTTATTTGATGGGTCATCCTGACATGG ATGGATGGACACATCATACATGCACAACATGATGCACCTGACGCATGACA ACTGACAACTGACTGGCCAGCTCTGTGCCCATGAAGGAATATACGGATGA CATGTATGGGAATAAGGTCGCCGGGGACAATAGATGGGCCTCCTGGTGGG GAAAG
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig10560:3089..4243+

>mRNA_D-mesarthrocarpus_Contig10560.2.1 ID=mRNA_D-mesarthrocarpus_Contig10560.2.1|Name=mRNA_D-mesarthrocarpus_Contig10560.2.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=399bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig10560:3089..4243+ (Discosporangium mesarthrocarpum MT17_79)
TGCACGGGAAATCGCAGTCTTCCTGTGTTGGAAGGGGTTGATGTGGTAGC
GTATTACCAACTCGACCCGGGTGCTGACCCCGTGCACGGTGTCTCCTCCA
TAAGGGCATACCTGAACAATTACGCGTTTTACTTCAGTACAGAGGAAAAC
AAGCAAGTGTTTCAGGCCAACCCCTGGAAGTATGCCCCGGCATGGGGAGG
GTTTTGCGCGTGGGGTATTGCTGCAGAAGATATCTGGAGTAAGGGGTTCC
TGGGACCACCAGCAGACCCAGCGTCATGGTTGATAAGAAACGGTGTACTC
TATGTCTTCCACAGCTCTGTGCCCATGAAGGAATATACGGATGACATGTA
TGGGAATAAGGTCGCCGGGGACAATAGATGGGCCTCCTGGTGGGGAAAG
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