mRNA_D-mesarthrocarpus_Contig1051.3.1 (mRNA) Discosporangium mesarthrocarpum MT17_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_D-mesarthrocarpus_Contig1051.3.1
Unique NamemRNA_D-mesarthrocarpus_Contig1051.3.1
TypemRNA
OrganismDiscosporangium mesarthrocarpum MT17_79 (Discosporangium mesarthrocarpum MT17_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_D-mesarthrocarpus_Contig1051.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D-mesarthrocarpus_Contig1051contigD-mesarthrocarpus_Contig1051:18705..19815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Discosporangium mesarthrocarpum MT17_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FS98
PFAMsEF-hand_8
Model size260
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.31e-05
EggNOG OGs28JGH@1|root,2QRVM@2759|Eukaryota
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-05_004820.1
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.9589043-UTR-D-mesarthrocarpus_Contig1051:18704..187071680789187.9589043-UTR-D-mesarthrocarpus_Contig1051:18704..18707Discosporangium mesarthrocarpum MT17_79UTRD-mesarthrocarpus_Contig1051 18705..18707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789187.9755814-CDS-D-mesarthrocarpus_Contig1051:18707..189201680789187.9755814-CDS-D-mesarthrocarpus_Contig1051:18707..18920Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1051 18708..18920 +
1680789187.9873803-CDS-D-mesarthrocarpus_Contig1051:19773..198151680789187.9873803-CDS-D-mesarthrocarpus_Contig1051:19773..19815Discosporangium mesarthrocarpum MT17_79CDSD-mesarthrocarpus_Contig1051 19774..19815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_D-mesarthrocarpus_Contig1051.3.1prot_D-mesarthrocarpus_Contig1051.3.1Discosporangium mesarthrocarpum MT17_79polypeptideD-mesarthrocarpus_Contig1051 18708..19815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_D-mesarthrocarpus_Contig1051.3.1

>prot_D-mesarthrocarpus_Contig1051.3.1 ID=prot_D-mesarthrocarpus_Contig1051.3.1|Name=mRNA_D-mesarthrocarpus_Contig1051.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=polypeptide|length=85bp
MEAEDSGQRRVREAKPALLTDGHPEMHGGLPHHHRGPQGEAWGEALKESP
EMMASRLEDTLVHEAVVRGLDVMDYMYSLKGGAAS
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mRNA from alignment at D-mesarthrocarpus_Contig1051:18705..19815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_D-mesarthrocarpus_Contig1051.3.1 ID=mRNA_D-mesarthrocarpus_Contig1051.3.1|Name=mRNA_D-mesarthrocarpus_Contig1051.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1051:18705..19815+ (Discosporangium mesarthrocarpum MT17_79)
CTGATGGAGGCGGAAGACAGTGGGCAGAGGCGGGTGCGGGAGGCCAAGCC
CGCCCTCCTCACTGATGGCCACCCAGAGATGCATGGAGGTCTCCCCCACC
ACCACCGGGGCCCTCAAGGAGAAGCGTGGGGGGAAGCGCTGAAGGAAAGC
CCCGAGATGATGGCTAGCCGCCTGGAGGACACCCTGGTACATGAGGCAGT
GGTCCGAGGCTTGGATGTGAGTATTGATGAGTTAGAGCGACTGCATTTGC
CCCATATCGAAGATAATGGCGGCTAGGGTTAGGGCTGGTGCTGGGGTTGG
GATTGGAGTGCCTCTCGGACCACGTAGCCACCACGTAGCACCTTCGTGCC
TCTGCACAAGCTCTAGGGCACTGCTCATGGCCTAACCATGTGGGGCTCTA
GGGCACTGCGCATGGCCTAACCATGTGGGGCTCTAGGGCACTGCGCATGG
CCTAACCATGTGGGGCTCTAGGGCACTGCGCATGGCCTAACCATGTGGGG
CTCTAGGGCACTGCCAACTACAACAACTTCATGGTCCCGGGTCCTTCCAT
CGGTGACCCGTGGGGAGGCAGGGCCATAGTACTTCCCAGGGTTAGGGTTC
TTCTTAGTTGAAGTGGTTCGTAGGGTGAGGGTTGAGGGTTAGGGTTAGGG
ATAGGCTTAGGGTTAGGGTCAGGGTCAGGGTCAGGGTCAGGGTCAGGGTT
AGGGTTATCGTGCTGAATCAGTTGCCATGCCACATGCACTATGTCAGAAC
CCTAACCCTAACCCTACAGGTATTCCTAAACCTAGCCCTAACCTCAACCC
AACCCTAACCCTAACCCTATCCCTATGCATATTCCTCACCCTATCCCTCA
CCCCTGCCCTAACCCTAATCCTAACCCTAACCCTGACCCTAATCCTAACC
CTGACTCTGACCCTTACCCTCAGCCCAGCCCTGGCCCAGAACCTTTGCCC
GCACTCTACATGTACCCAACCCTGAGCCTCAAGAAGCCCTAACCCTAACT
GATCTGCACAGTATGTCACCCGGTGTTTCCTACCCACACCCCCACACCCA
CAAAAAACGCCAACCCAAGGTGATGGACTACATGTATTCCCTCAAGGGAG
GGGCAGCATCA
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Coding sequence (CDS) from alignment at D-mesarthrocarpus_Contig1051:18705..19815+

>mRNA_D-mesarthrocarpus_Contig1051.3.1 ID=mRNA_D-mesarthrocarpus_Contig1051.3.1|Name=mRNA_D-mesarthrocarpus_Contig1051.3.1|organism=Discosporangium mesarthrocarpum MT17_79|type=CDS|length=255bp|location=Sequence derived from alignment at D-mesarthrocarpus_Contig1051:18705..19815+ (Discosporangium mesarthrocarpum MT17_79)
ATGGAGGCGGAAGACAGTGGGCAGAGGCGGGTGCGGGAGGCCAAGCCCGC
CCTCCTCACTGATGGCCACCCAGAGATGCATGGAGGTCTCCCCCACCACC
ACCGGGGCCCTCAAGGAGAAGCGTGGGGGGAAGCGCTGAAGGAAAGCCCC
GAGATGATGGCTAGCCGCCTGGAGGACACCCTGGTACATGAGGCAGTGGT
CCGAGGCTTGGATGTGATGGACTACATGTATTCCCTCAAGGGAGGGGCAG
CATCA
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